| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | CP009273 | 2,305,991 | G→T | Q80K (CAG→AAG) | ompC ← | outer membrane porin protein C |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 2,305,991 | 0 | G | T | 99.1% | 355.8 / ‑5.2 | 106 | Q80K (CAG→AAG) | ompC | outer membrane porin protein C |
| Reads supporting (aligned to +/- strand): ref base G (0/0); major base T (50/55); minor base C (0/1); total (50/56) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.49e-01 | |||||||||||
Only 100 of 106 total aligned reads displayed.
ACGTCGGTCCAGGAAGTTACGTCATAAACAACGCCGTAGTTACGACCGTAGTCGAAAGAACCCACATCCTGGAATT‑TCAGACCTGCGAATGCCACACGGGTCCAGGAGTTGTTTTCGTTTTCAGCGCTGTTGCCCTGGATCTGATATTCCCACTGGCCGTAACCGGTCAGCTGGTCAGTAACCTGAGTTTCACCTTTGAAGCCAAGACGCATGTAGGTCTGGTCGCCATCTACATCTTTGTTGTCAGAGAAATAGTGCAGGCCGTCTACTTTACCGTACAGATCTAAT > CP009273/2305849‑2306136 | aCGTCGGTCCAGGAAGTTACGTCATAAACAACGGCGTAGTTATGACCGAAGTCGAAAGAACCAACAT‑CAGGACTTCTCAAAAACGTTACCCGGACACTGGTCCAGGAGTTGTTTTGGTTTTCAGCGCTGATGCCCTGGATCTTATATTc < 2:1452580/149‑1 (MQ=255) ggTCCAGGAAGTTACGTCATAAACAACGCCGTAGTTACGACCGTAGTCGAAAGAACCCACATCCTGGAATT‑TCAGACCTGCGAATGCCACACGGGTCCAGGAGTTGTTTTCGTTTTCAGCGCTGTTGCCCTGGATCTTATATTc < 1:471203/144‑1 (MQ=255) ggTCCAGGAAGTTACGTCATAAACAACGCCGTAGTTACGACCGTAGTCGAAAGAACCCACATCCTGGAATT‑TCAGACCTGCGAATGCCACACGGGTCCAGGAGTTGTTTTCGTTTTCAGCGCTGTTGCCCTGGATCTTATATTc < 1:1407222/144‑1 (MQ=255) ggTCCAGGAAGTTACGTCATAAACAACGCCGTAGTTACGACCGTAGTCGAAAGAACCCACATCCTGGAATT‑TCAGACCTGCGAATGCCACACGGGTACAGGAGGTGTTTTAGTTTTCCACGCTGTTGCCCTGGAACTTATATTc > 1:232812/1‑144 (MQ=255) gTCCAGGAAGTTACGTCATAAACAACGCCGTAGTTACGACCGTAGTCGAAAGAACCCACATCCTGGAATT‑TCAGACCTGCGAATGCCACACGGGTCCAGGCGTTGTTTTCGTTTTCAGCGCTGTTGCCCTGGATCTTATATTcc > 1:113315/1‑144 (MQ=255) cAGGAAGTTACGTCATAAACAACGCCGTAGTTACGACCGTAGTCGAAAGAACCCACATCCTGGAATT‑TCAGACCTGCGAATGCCACACGGGTCCAGGAGTTGTTTTCGTTTTCAGCGCTGTTGCCCTGGATCTTATATTCCCACTGGcc < 2:261846/149‑1 (MQ=255) ggAAGTTACGTCATAAACAACGCCGTAGTTACGACCGTAGTCGAAAGAACCCACATCCTGGAATT‑TCAGACCTGCGAATGCCACACGGGTCCAGGAGTTGTTTTCGTTTTCAGCGCTGTTGCCCTGGATCTTATATTCCCCCTg > 1:931218/1‑144 (MQ=255) gAATTTACGTCATAAACAACGCCGTAGTTACGACCGTAGTCGAAAGAACCCACATCCTGGAATT‑TCAGACCTGCGAATGCCACACGGGTCCAGGAGTTGTTTTCGTTTTCAGCGCTGTTGCCCTGGATCTTATATTCCCACTgg < 1:1166792/144‑1 (MQ=255) aaGTTACGTCATAAACAACGCCGTAGTTACGACCGTAGTCGAAAGAACCCACATCCTGGAATT‑TCAGACCTGCGAATGCCACACGGGTCCAGGAGTTGTTTTCGTTTTCAGCGCTGTTGCCCTGGATCTTATATTCCCACTGGCCGTaa > 2:1161318/1‑149 (MQ=255) aGTTACGTCATAAACAACGCCGTAGTTACGACCGTAGTCGAAAGAACCCACATCCTGGAATT‑TCAGACCTGCGAATGCCACACGGGTCCAGGAGTTGTTTTCGTTTTCAGCGCTGTTGCCCTGGATCTTATATTCCCACTGGcc < 1:618831/144‑1 (MQ=255) ttACGTCATAAACAACGCCGTAGTTACGACCGTAGTCGAAAGAACCCACATCCTGGAATT‑TCAGACCTGCGAATGCCACACGGGTCCAGGAGTTGTTTTCGTTTTCAGCGCTGTTGGCCTGGATCTTATATTCCCACTGGCCGTAACCg > 2:1350616/1‑149 (MQ=255) ttACGTCATAAACAACGCCGTAGTTACGACCGTAGTCGAAAGAACCCACATCCTGGAATT‑TCAGACCTGCGAATGCCACACGGGTCCAGGAGTTGTTTTCGTTTTCAGCGCTGTTGCCCTGGATCTTATATTCCCACTGGCCGTAACCg < 2:1388068/149‑1 (MQ=255) aCGTCATAAACAACGCCGTAGTTACGACCGTAGTCGAAAGAACCCACATCCTGGAATT‑TCAGACCTGCGAATGCCACACGGGTCCAGGAGTTGTTTTCGTTTTCAGCGCTGTTGCCCTGGATCTTATATTCCCACTGGCCGTAACCGGt > 2:1375782/1‑149 (MQ=255) aCGTCATAAACAACGCCGTAGTTACGACCGTAGTCGAAAGAACCCACATCCTGGAATT‑TCAGACCTGCGAATGCCACACGGGTCCAGGAGTTGTTTTCGTTTTCAGCGCTGTTGCCCTGGATCTCATATTCCCACTGGCCGTAACCGGt < 2:1474549/149‑1 (MQ=255) cGTCATAAACAACGCCGTAGTTACGACCGTAGTCGAAAGAACCCACATCCTGGAATT‑TCAGACCTGCGAATGCCACACGGGTCCAGGAGTTGTTTTCGTTTTCAGCGCTGTTGCCCTGGATCTTATATTCCCACTGGCCGTAACCGGTc < 2:339908/149‑1 (MQ=255) cATAAACAACGCCGTAGTTACGACCGTAGTCGAAAGAACCCACATCCTGGAATT‑TCAGACCTGCGAATGCCACACGGGTCCAGGAGTTGTTTTCGTTTTCAGCGCTGTTGCCCTGGATCTTATATTCCCACTGGCCGTAACCgg > 1:637102/1‑144 (MQ=255) tAAACAACGCCGTAGTTACGACCGTAGTCGAAAGATCCCACATCCTGGAATT‑TCAGACCTGCGAATGCCACACGGGTCCAGGAGTTGTTTTCGTTTTCAGCGCTGTTGCCCTGGATCTTATATTCCCACTGGCCGTAACCGGTCAGCTg < 2:1106500/149‑1 (MQ=255) acaacGCCGTAGTTACGACCGTAGTCGAAACAACCCACATCCTGGAATT‑TCAGACCTCCGAATGCCACACGGGTCCAGGAGTTGTTTTCGTTTTCAGCGCTGTTGCCCTAGTGCTTATATTCCCCCTGGCCGTAACCGGTCAGc > 1:824660/1‑144 (MQ=255) caacGCCGTAGTTACGACCGTAGTCGAAAGAACCCACATCCTGGAATT‑TCAGACCTGCGAATGCCACACGGGTCCAGGAGTTGTTTTCGTTTTCAGCGCTGTTGCCCTGGATCTTATATTCCCACTGGCCGTAACCGGTCAGCt < 1:522134/144‑1 (MQ=255) aacGCCGTAGTTACGGCCGGAGTCGAAAGAACCCACATCCTGGAATT‑TCAGACCTGCGAATGCCACACGGGTCCAGGAGTTGTTTTCGTTTTCAGCGCTGTTGCCCTGGATCTTATATTCCCACTGGCCGTAACAGGTGAGCTg < 1:18444/144‑1 (MQ=255) aacGCCGTAGTTACGACCGTAGTCGAACGAACCCACATCCTGGAATT‑TCAGACCTGCGAATGCCACACGGGTCCAGGAGTTGTTTTCGTTTTCAGCGCTGTTGCCCTGGATCTTATATTCCCACTGGCCGTAACCGGTCGGCTGGTCAg < 2:328900/149‑1 (MQ=255) aacGCCGTAGTTACGACCGTAGTCGAAAGAACCCACATCCTGGAATT‑TCAGACCTGCGAATGCCACACGGGTCCAGGAGTTGTTTTCGTTTTCAGCGCTGTTGCCCTGGATCTTATATTCCCACTGGCCGTAACCGGTCAGCTGGCCAg > 2:1502850/1‑149 (MQ=255) cGCCGTAGTTACGACCGTAGTCGAAAGAACCCACATCCTGGAATT‑TCAGACCTGCGAATGCCACACGGGTCCAGGAGTTGTTTTCGTTTTCAGCACTGTTGCCCTGGATCTTATATTCCCACTGGCCGTAACCGGTCAGCTGGt < 1:75200/144‑1 (MQ=255) gCCGTAGTTACGACCGTAGTCGAAAGAACCCACATCCTGGAATT‑TCAGACCTGCGAATGCCACACGGGTCCAGGAGTTGTTTTCGTTTTCAGCGCTGTTGCCCTGGATCTTATATTCCCACTGGCCGTAACCGGTCAGCTGGTCAGTaa > 2:125616/1‑149 (MQ=255) ccGTAGTTACGACCGTAGTCGAAAGAACCCACATCCTGGAATT‑TCAGACCTGCGAATGCCACACGGGTCCAGGAGTTGTTCTCGTATTCAGCGCTGCTGGACTGGAGCTTATATTCCCACTGGCCGTAACCGGTCAGCTGGTCAGTAAc < 2:1951143/149‑1 (MQ=255) gTAGTTACGACCGTAGTCGAAAGAACCCACATCCTGGAATT‑TCAGACCTGCGAATGCCACACGGGTCCAGGAGTTGTTTTCGTTTTCAGCGCTGTTGCCCTGGATCTTATATTCCCACTGGCCGTAACCGGTCAGCTGGTCAGTAACCt > 2:31530/1‑149 (MQ=255) gtaaccatcggTAGTCGAAAGAACCCACATCCTGGAATT‑TCACACCTGCGAATGCCACACGGGTTCAGGAGTTGTTTTCGTTTTCAGCGCTGTTGCCCTGGATCTTATATTCCCACTGGCCGTAACCGGTCAGCTGGTCAGTag < 1:457900/134‑2 (MQ=255) gTTACGACCGTAGTCGAAAGAACCCACATCCTGGAATT‑TCAGACCTGCGAATGCCACACGGGTCCAGGAGTTGTTTTCGTTTTCAGCGCTGTTGCCCTGGATCTTATATTCCCACTGGCCGTAACCGGTCAGCTGGTCAGTAACCTGAg < 2:334832/149‑1 (MQ=255) cGACCGTAGTCGAATGAACCCACATCCTGGAATT‑TCAGACCTGCGAATGCCACACGGGTCCAGGAGTTGTTTTCGTTTTCAGCGCTGTTGCCCTGGATCTTATATTCCCACTGGCCGTAACCGGTCAGCTGGCCAGTAACCTGAGTTTc < 2:1243765/149‑1 (MQ=255) gACCGTAGTCGAAAGAACCCACATCCTGGAATT‑TCAGACCTGCGAATGCCACACGGGTCCAGGAGTTGTTTTCGTTTTCAGCGCTGTTGCCCTGGATCTTATATTCCCACTGGCCGTAACCGGTCAGCTGGTCAGTAACCTGAGTTTCa < 2:614555/149‑1 (MQ=255) gACCGTAGTCGAAAGAACCCACATCCTGGAATT‑TCAGACCTGCGAATGCCACACGGGTCCAGGAGTTGTTTTCGTTTTCAGCGCTGTTGCCCTGGATCTTATATGCCCACTGGCCGTAACCGGTCAGCTGGTCAGTAACCTGAg > 1:956366/1‑144 (MQ=255) gACCGTAGTCGAAAGAACCCACATCCTGGAATT‑TCAGACCTGCGAATGCCACACGGGTCCAGGAGTTGTTTTCGTTTTCAGCGCTGTTGCCCTGGATCGTATATTCCCACTGGCCGTCACCGGTCCGCTGGTCAGTAACCttgg > 1:488664/1‑141 (MQ=255) gccGTAGTCGAAAGAACCCACAACCTGGAATT‑GTAGACCTGCGAATGCCACACGGGTCCAGGAGTTGTTTTCGTTTTCAGCGCTGTTGCCCGGGATCTTATATTCCCACTGGCCGTAACCGGTCAGCTGGTCAGTAACCTGAGTTTCAc < 2:1628963/148‑1 (MQ=255) gTAGTCGAAAGAACCCACATCCTGGAATT‑TCAGACCTGCGAATGCCACACGGGTCCAGGAGTTGTTTTCGTTTTCAGCGCTGTTGCCCTGGATCTTATATTCCCACTGGCCGTAACCGGTCAGCTGGTCAGTAACCTGAGTTTc < 1:575527/144‑1 (MQ=255) tAGTCGAAAGAACCCACATCCTGGAATT‑TCAGACCTGCGAATGCCACACGGGTCCAGGAGTTGTTTTCGTTTTCAGCGCTGTTGCCCTGGATCTTATATTCCCACTGGCCGTAACCGGTCAGCTGGTCAGTAACCTGAGTTTCa > 1:988596/1‑144 (MQ=255) tAGTCGAAAGAACCCACATCCTGGAATT‑TCAGACCTGCGAATGCCACACGGGTCCAGGAGTTGTTTTCGTTTTCAGCGCTGTTGCCCTGGATCTTATATTCCCACTGGCCGTAACCGGTCAGCTGGTCAGTAACCTGAGTTTCACCttt < 2:517211/149‑1 (MQ=255) tCGAAAGAACCCACATCCTGGAATT‑TCAGACCTGCGAATGCCACACGGGTCCAGGAGTTGTTTTCGTTTTCAGCGCTGTTGCCCTGGATCTTATATTCCCACTGGCCGTAACCGGTCAGCTGGTCAGTAACCTGAGTTTCACCTTTGaa > 2:544367/1‑149 (MQ=255) tCGAAAGAACCCACATCCTGGAATT‑TCAGACCTGCGAATGCCACACGGGTCCAGGAGTTGTTTTCGTTTTCAGCGCTGTTGCCCTGGATCTTATATTCCCACTGGCCGTAACCGGTCAGCTGGTCAGTAACCTGAGTTTCACCTTTGaa > 2:544194/1‑149 (MQ=255) tCGAAAGAACCCACATCCTGGAATC‑TCAGACCTGCGAATGCCACACGGGTCCAGGAGTTGTTTTCGTTTTCAGCGCTGTTGCCCTGGATCTTATATTCCCACTGGCCGTAACCGGTCAGCTGGTCAGTAACCTGAGTTTCACCTTTGaa > 2:1472251/1‑149 (MQ=255) gAAAGAACCCACATCCTGGAATT‑TCAGACCTGCGAATGCCACACGGGTCCAGGAGTTGTTTTCGTTTTCAGCGCTGTTGCCCTGGATCTTATATTCCCACTGGCCGTAACCGGTCAGCTGGTCAGTAACCTGAGTTTCACCttt > 1:628310/1‑144 (MQ=255) gAAAGAACCCACATCCTGGAATT‑TCAGACCTGCGAATGCCACACGGGTCCAGGAGTTGTTTTCGTTTTCAGCGCTGTTGCCCTGGATCTTATATTCCCACTGGCCGTAACCGGTCAGCTGGTCAGTAACCTGAGTTTCACCTTTGAAGc > 2:119104/1‑149 (MQ=255) gAAAGAACCCACATCCTGGAATT‑TCAGACCTGCGAATGCCACACGGGGCCAGGAGTTGTTTTCGTTTTCAGCGCTGTTGCCCTGGATCTTATATTCCCACTGGCCGTAACCGGTCAGCTGGTCAGTAACCTGAGTTTCACCttt < 1:1312821/144‑1 (MQ=255) aaGAACCCACATCCTGGAATT‑TCAGACCTGCGAATGCCACACGGGTCCAGGAGTTGTTTTCGTTTTCAGCGCTGTTGCCCTGGATCTTATATTCCCACTGGCCGTAACCGGTCAGCTGGTCAGTAACCTGAGTTTCACCTTTGa < 1:6116/144‑1 (MQ=255) aaGAACCCACATCCTGGAATT‑TCAGACCTGCGAATGCCACACGGGTCCAGGAGTTGTTTTCGTTTTCAGCGCTGTTGCCCTGGATCTTATATTCCCACTGGCCGTAACCGGTCAGCTGGTCAGTAACCTGAGTTTCACCTTTGAAGCCa < 2:1861785/149‑1 (MQ=255) aGAACCCACCTCCTGGAATT‑TCAGACCTGCGAATGCCACACGGGTCCAGGAGTTGTTTTCGTTTTCAGCGCTGTTGCCCTGGATCTTATATTCCCACTGGCCGTAACCGGTCAGCTGGTCAGTAACCTGAGTTTCACCTTTGAAGCCaa < 2:513316/149‑1 (MQ=255) aGAACCCACATCCTGGAATT‑TCAGACCTGCGAATGCCACACGGGTCCAGGAGTTGTTTTCGTTTTCAGCGCTGTTGCCCTGTATCTTATATTCCCACTGGCCGTAACCGGTCAGCTGGTCAGTAACCTGAGTTTCACCTTTGAAGCCaa < 2:1217417/149‑1 (MQ=255) aGAACCCACATCCTGGAATT‑TCAGACCTGCGAATGCCACACGGGTCCAGGAGTTGTTTTCGTTTTCAGCGCTGTTGCCCTGGATCTTATATTCCCACTGGCCGTAACCGGTCAGCTGGTCAGTAACCTGAGTTTCACCTTTGaa < 1:270305/144‑1 (MQ=255) cccACATCCTGGAATT‑TCAGACCTGCGAATGCCACACGGGTCCAGGAGTTGTTTTCGTTTTCAGCGCTGTTGCCCTGGATCTTATATTCCCACTGGCCGTAACCGGTCAGCTGGTCAGTAACCTGAGTTTCACCTTTGAAGCCAAGACg < 2:1627550/149‑1 (MQ=255) cccACATCCTGGAATT‑TCAGACCTGCGAATGCCACACGGGTCCAGGAGTTGTTTTCGTTTTCAGCGCTGTGGCCCTGGATCTTATATTCCCACTGGCCGTAACCGGTCAGCTGGTCAGTAACCTGAGTTTCACCTTTGAAGCCa < 1:1574733/144‑1 (MQ=255) ccACATCCTGGAATT‑TCAGACCTGCGAATGCCACACGGGTCCAGGAGTTGTTTTCGTTTTCAGCGCTGTTGCCCTGGATCTTATATTCCCACTGGCCGTAACCGGTCAGCTGGTCAGTAACCTGAGTTTCACCTTTGAAGCCAAGACGc < 2:1953217/149‑1 (MQ=255) ccACATCCTGGAATT‑TCAGACCTGCGAATGCCACACGGGTCCAGGAGTTGTTTTCGTTTTCAGCGCTGTTGCCCTGGATCTTATATTCCCACTGGCCGTAACCGGTCAGCTGGTCAGTAACCTGAGTTTCACCTTTGAAGCCAAGACGc < 2:1953179/149‑1 (MQ=255) ccACATCCTGGAATT‑TCAGACCTGCGAATGCCACACGGGTCCAGGAGTTGTTTTCGTTTTCAGCGCTGTTGCCCTGGATCTTATATTCCCACTGGCCGTAACCGGTCAGCTGGTCAGTAACCTGAGTTTCACCTTTGAAGCCAAGACGc < 2:1199242/149‑1 (MQ=255) ccACATCCTGGAATT‑TCAGACCTGCGAATGCCACACGGGTCCAGGAGTTGTTTTCGTTTTCAGCGCTGTTGCCCTGGATCTTATATGCCCACTGGCCGTAACCGGTCAGCTGGTCAGTAACCTGAGTTTCACCTTTGAAGCCAAGACGc > 2:1344958/1‑149 (MQ=255) acaTCCTGGAATT‑TCAGACCTGCGAATGCCACACGGGTCCAGGAGTTGTTTTCGTTTTCAGCGCTGTTGCCCTGGATCTTATATTCCCACTGGCCGTAACCGGTCAGCTGGTCAGTAACCTGAGTTTCACTTTTGAAGCCAAGACGCAt < 2:1455175/149‑1 (MQ=255) acaTCCTGGAATT‑TCAGACCTGCGAATGCCACACGGGTCCAGGAGTTGTTTTCGTTTTCAGCGCTGTTGCCCTGGATCTTATATTCCCACTGGCCGTAACCGGTCAGCTGGTCAGTAACCTGAGTTTCACCTTTGAAGCCAAGACGCAt < 2:1573712/149‑1 (MQ=255) ccTGGAAGT‑TCAGACCTGCGAATGCCACCCGGGTCCAGGAGTTGTTGTCGTTTTCAGCGCTGTGGCCCTGGATCTTATATTCCCCCTGGCCGTAACCGGTCAGCTGGTCAGTAACCTGAGTTTCACCTTTGAAGCCAAGACGCATGTAg < 2:1829268/149‑1 (MQ=255) tGGAATT‑TCAGACCTGCGAATGCCACACGGGTCCAGGAGTTGTTTTCGTTTTCATCGCTGTTGCCCTGGATCTTATATTCCCACTGGCCGTAACCGGTCAGCTGGTCAGTAACCTGAGTTTCACCTTTGAAGCCGAGACGCATGGAGGt > 2:69009/1‑149 (MQ=255) ggAATT‑TCAGACCTGCGAATGCCACACGGGTCCAGGAGTTGTTTTCGTTTTCAGCGCTGTTGCCCTGGATCTTATATTCCCACTGGCCGTAACCGGTCAGCTGGTCAGTAACCTGAGTTTCACCTTTGAAGCCAAGACGCATGTAGGTc > 2:1601765/1‑149 (MQ=255) gAATT‑TCAGACCTGCGAATGCCACACGGGTCCAGGAGTTGTTTTCGTTTTCAGCGCTGTTGCCCTGGATCTTATATTCCCACTGGCCGTAACCGGTCAGCTGGTCAGTAACCTGAGTTTCACCTTTGAAGCCAAGACGCATGTAGGTCt < 2:244530/149‑1 (MQ=255) t‑tCACACCTGCGACTGCCACACGGGTCCAGGAGTTGTTCTCGTTTTCAGCGCTGTTGCCCTGGATCTTATATTCCCACTGGCCGTAACCGGTCAGCTGGTCAGTAACCTGAGTTTCACCTTTGAAGCCAAGACGCATGTAGGTc < 1:1171120/144‑1 (MQ=255) cAGACCTGCGAATGCCACACGGGTCCAGGAGTTGTTTTCGTTTTCAGCGCTGTTGCCCTGGATCTTATATTCCCACTGGCCGTAACCGGTCAGCTGGTCAGTAACCTGAGTTTCACCTTTGAAGCCAAGACGCATGTAGGTCTGGTCGc < 2:1970605/149‑1 (MQ=255) aGACCTGCGAATGCCACACGGGTCCAGGAGTTGTTTTCGTTTTCAGCGCTGTTGCCCTGGATCTTATATTCCCACTGGCCGTAACCGGTCAGCTGGTCAGTAACCTGAGTTTCACCTTTGAAGCCAAGACGCATGTAGGTCTGGTCGcc > 2:653960/1‑149 (MQ=255) gACCTGCGAATGCCACACGGGTCCAGGAGTTGTTTCCGTTTTCAGCGCTGTTGCCCTGGATCTTATATTCCCACTGGCCGTAACCGGTCAGCTGGTCAGTAACCTGAGTTTCACCTTTGAAGCCAAGACGCATGTAGGTCTGGt < 1:975764/144‑1 (MQ=255) cTGCGAATGCCACACGGGTCCAGGAGTTGTTTTCGTTTTCAGCGCTGTTGCCCTGGATCTTATATTCCCACTGGCCGTAACCGGTCAGCTGGTCAGTAACCTGAGTTTCACCTTTGAAGCCAAGACGCATGTAGGTCTGGTCGCCATCt > 2:614247/1‑149 (MQ=255) tGCGAATGCCACACGGGTCCAGGAGTTGTTTTCGTTTTCAGCGCTGTTGCCCTGGATCTTATATTCCCACTGGCCGTAACCGGTCAGCTGGTCAGTAACCTGTGTTTCACCTTTTAAGCCAAGACGCATGTAGGTCTGGTCGcc < 1:838420/144‑1 (MQ=255) aaTGCCTCACGGGTACAACAGCTTTATCCGTTTTCAGCGCTGTTGCCCTGGATCTTATATTCCCACTGGCCGTAACCGGTCAGCTGGTCAGTAACCTGAGTTTCACCTTTGAAGCCAAGACGCATGTAGGTCTGGTCGCCATCt > 1:844848/1‑144 (MQ=255) gCCACACGGGTCCAGGAGTTGTTTTCGTTTTCAGCGCTGTTGCCCTGGATCTTATATTCCCACTGGCCGTAACCGGTCAGCTGGTCAGTAACCTGAGTTTCACCTTTGAAGCCAAGACGCATGTAGGTCTGGTCGCCATCTACa > 1:1150951/1‑144 (MQ=255) cacaCGGGTCCAGGAGTTGTTTTCGTTTTCAGCGCTGTTGCCCTGGATCTTATATTCCCACTGGCCGTAACCGGTCAGCTGGTCAGTAACCTGAGTTTCACCTTTGAAGCCAAGACGCATGTAGGTCTGGTCGCCATCTACATc > 1:72608/1‑144 (MQ=255) acacGGGTCCAGGAGTTGTTTTCGTTTTCAGCGCTGTTGCCCTGGATCTTATATTCCCACTGGCCGTAACCGGTCAGCTGGTCAGTAACCTGAGTTTCACCTTTGAAGCCAAGACGCATGTAGGTCTGGTCGCCATCTACATCt > 1:158616/1‑144 (MQ=255) acacGGGTCCAGGAGTTGTTTTCGTTTTCAGCGCTGTTGCCCTGAATCTTATATTCCCACTGGCCGTAACCGGTCAGCTGGTCAGTAACCTGAGTTTCACCTTTGAAGCCAAGACGCATGTAGGTCTGGTCGCCATCTACATCt > 1:617375/1‑144 (MQ=255) acacGGGTCCAGGAGTTGTTTTCGTTTGCAGCGCTGTTGCCCTGGATCTTATATTCCCACTGGCCGTAACCGGTCAGCTGGTCAGTAACCTGAGTTTCACCTTTGAAGCCAAGACGCATGTAGGTCTGGTCGCCATCTACATCTttgtt < 2:1599953/149‑1 (MQ=255) acacGGGTCCAGGAGTTGTTTTCGTATTCAGCGCTGTTGCCCTGGATCTTATATTCCCTCTGGCCGTAACCGGTCAGCTGGGCAGTAACCTGAGTTTCACCTTTGAAGCCAAGACGCATGTAGGTCTGGTCGCCATCTACATCTttgtt < 2:1223249/149‑1 (MQ=255) cGGGTCCAGGAGTTGTTTTCGTTTTCAGCGCTGTTGCCCTGGATCTTATATTCCCACTGGCCGTAACCGGTCAGCTGGTCAGTAACCTGAGTTTCACCTTTGAAGCCAAGACGCATGTAGGTCTGGTCGCCATCTACATCTTTGTTGTc < 2:509277/149‑1 (MQ=255) gggccAGGAGTTGTTTTCGTTTTCAGCGCTGTTGCCCTGGATCTTATATTCCCACTGGCCGTAACCGGTCAGCTGGTCAGTAACCTGAGTTTCACCTTTGAAGCCAAGACGCATGTAGGTCTGGTCGCCATCTACATCTttgtt > 1:1216231/4‑144 (MQ=255) ggTCCAGGAGTTGTTTTCGTTTTCAGCGCTGTTGCCCTCGATCTTATATTCCCACTGGCCGTAACCGGTCAGCTGGTCAGTAACCTGAGTTTCACCTTTGAAGCCAAGACGCATGTAGGTCTGGTCGCCATCTACATCTTTGTTGTCag < 2:550633/149‑1 (MQ=255) cAGGAGTTGTTTTCGTTTTCAGCGCTGTTGCCCTGGATCTTATATTCCCACTGGCCGTAACCGGTCAGCTGGTCAGTAACCTGAGTTTCACCTTTGAAGCCAAGACGCATGTAGGTCTGGTCGCCATCTACATCTTTGTTGTCa > 1:1329909/1‑144 (MQ=255) aGGAGTTGTTTTCGTTTTCAGCGCTGTTGCCCTGGATCTTATATTCCCACTGGCCGTAACCGGTCAGCTGGTCAGTAACCTGGGTTTCACCTTTGAAGCCAAGACGCATGTAGGTCTGGTCGCCATCTACATCTTTGTTGTCag > 1:13017/1‑144 (MQ=255) gAGTTGTTTTCGTTTTCAGCGCTGTTGCCCTGGATCTTATATTCCCACTGGCCGTAACCGGTCAGCTGGTCAGTAACCTGAGTTTCACCTTTGAAGCCAAGACGCATGTAGGTCTGGTCGCCATCTACATCTTTGTTGTCAGAGAAATa < 2:1274005/149‑1 (MQ=255) gAGTTGTTTTCGTTTTCAGCGCTGTTGCCCTGGATCTTATATTCCCACTGGCCGTAACCGGTCAGCTGGTCAGTAACCTGAGTTTCACCTTTGAAGCCAAGACGCATGTAGGTCTGGTCGCCATCTACATCCTCGTTGTCcgag > 1:250255/1‑144 (MQ=255) ttcgttttcAGCGCTGTTGCCCTGGATCTTATATTCCCACTGGCCGTAACCGGTCAGCTGGTCAGTAACCTGAGTTTCACCTTTGAAGCCAAGACGCATGTAGGTCTGGTCGCCATCTACATCTTTGTTGTCAGAGAAATAGTg < 1:1625368/144‑1 (MQ=255) ttttcAGCGCTGTTGCCCTGGATCTTATATTCCCACTGGCCGTAACCGGTCAGCTGGTCAGTGACCTGAGTTTCACCTTTGAAGCCAAGACGCATGAAGGTCTGGTCGCCATCTACATCTTGGTTGTCAGAGAAATGGTGCAgg > 1:1835563/1‑144 (MQ=39) ttttcAGCGCTGTTGCCCTGGATCTTATATTCCCACTGGCCGTAACCGGTCAGCTGGTCAGTAACCTGAGTTTCACCTTTGAAGCCAAGACGCATGTAGGTCTGGTCGCCATCTACATCTTTGTTGTCAGAGAAATAGTGGAGGCCGTc > 2:592281/1‑149 (MQ=255) tttcAGCGCTGTTGCCCTGGATCTTATATTCCCACTGGCCGTAACCGGTCAGCTGGTCAGTAACCTGAGTTTCACCTTTGAAGCCAAGACGAATGCTGGGCTGGTCGCCATCTACATCTTTGTTGTCAGAGAAATAGTGCAGGCCGTCt > 2:1355193/1‑149 (MQ=255) aGCGCTGTTGCCCTGGATCTTATATTCCCACTGGCCGTAACCGGTCAGCTGGTCAGTAACCTGAGTTTCACCTTTGAAGCCAAGACGCATGTAGGTCTGGTCGCCATCTACATCTTTGTTGTCAGAGAAATAGTGCGGGCCGTc > 1:1545259/1‑144 (MQ=255) aGCGCTGTTGCCCTGGATCTTATATTCCCACTGGCCGTAACCGGTCAGCTGGTCAGTAACCTGAGTTTCACCTTTGAAGCCAAGACGCATGTAGGTCTGGTCGCCATCTACATCTTTGTTGTCAGAGAAATAGTGCAGGCCGTc > 1:1582029/1‑144 (MQ=255) aGCGCTGTTGCCCTGGATCTTATATTCCCACTGGCCGTAACCGGTCAGCTGGTCAGTAACCTGAGTTTCACCTTTGAAGCCAAGACGCATGTAGGTCTGGTCGCCATCTACATCTTTGTTGTCAGAGAAATAGTGCAGGCCGTCTACtt < 2:1658313/149‑1 (MQ=255) gcgcTGTTGCCCTGGATCTTATATTCCCACTGGCCGTAACCGGTCAGCTGGTCAGTAACCTGAGTTTCACCTTTGAAGCCAAGACGCATGTAGGTCTGGTCGCCATCTACATCTTTGTTGTCAGAGAAAAAGTGCAGGCCGTCt > 1:288795/1‑144 (MQ=255) cgcTGTTGCCCTGGATCTTATATTCCCACTGGCCGTAACCGGTCAGCTGGTCAGTAACCTGAGTTTCACCTTTGAAGCCAAGACGCATGTAGGTCTGGTCGCCATCTACATCTTTGTTGTCAGAGAAATAGTGCAGGCCGTCTa < 1:108305/144‑1 (MQ=255) cgcTGTTGCCCTGGATCTTATATTCCCACTGGCCGTAACCGGTCAGCTGGTCAGTAACCTGAGTTTCACCTTTGAAGCCAAGACGCATGTAGGTCTGGTCGCCATCTACATCTTTGTTGTCAGAGAAATAGTGCAGGCCGTCTACTTTa > 2:292258/1‑149 (MQ=255) gctgctGCCCTGGATCTTATATTCCCACTGGCCGTAACCGGTCAGCTGGTCAGTAACCTGAGTTTCACCTTTGAAGCCAAGACGCATGTAGGTCTGGTCGCCATCTACATCTTTGTTGTCAGAGAAATAGTGCAGGCCGTCTAc < 1:1475709/144‑1 (MQ=255) gcTGTTGCCCTGGATCTTATATTCCCACTGGCCGTAACCGGTCAGCTGGTCAGTAACCTGAGTTTCACCTTTGAAGCCAAGACGCATGTAGGTCTGGTCGCCATCTACATCTTTGTTGTCAGAGAAATAGTGCAGGCCGTCTAc < 1:79158/144‑1 (MQ=255) tGTTGCCCTGGATCTTATATTCCCACTGGCCGTAACCGGTCAGCTGGTCAGTAACCTGAGTTTCACCTTTGAAGCCAAGACGCATGTAGGTCTGGTCGCCATCTACATCTTTGTTGTCAGAGAAATAGAGCAGGCCGGCTACGTTACCg > 2:1426949/1‑149 (MQ=255) gCCCTGGATCTTATATTCCCACTGGCCGTAACCGGTCAGCTGGTCAGTAACCTGAGTTTCACCTTTGATGCCAAGACGCATGTAGGTCTGGTCGCCATCTACATCTTTGTTGTCAGAGAAATAGTGCAGGCCATCTACTTTAcc > 1:1225228/1‑144 (MQ=255) gCCCTGGATCTTATATTCCCACTGGCCGTAACCGGTCAGCTGGTCAGTAACCTGAGTTTCACCTTTGAAGCCAAGACGCATGTAGGTCTGGTCGCCATCTACATCTTTGTTGTCAGAGAAATAGTGCAGGCCGTCTACTTTAcc < 1:28213/144‑1 (MQ=255) gCCCTGGATCTTATATCCCCACTGGCCGTAACCGGTCAGCTGGTCAGTAACCTGAGTTTCACCTTTGAAGCCAAGACGCATGTAGGTCTGGTCGCCATCTACATCTTTGTTGTCAGAGAAATAGTGCAGGCCGTCAAccggagc < 1:17992/144‑7 (MQ=255) ccTGGATCTTATATTCCCACTGGCCGTAACCGGTCAGCTGGTCAGTAACCTGAGTTTCACCTTTGAAGCCAAGACGCATGTAGGTCTGGTCGCCATCTACATCTTTGTTGTCAGAGAAATAGTGCAGGCCGTCTACTTTACCGTACAGa > 2:1413729/1‑149 (MQ=255) cTGGATCTTATATTCCCACTGGCCGTAACCGGTCAGCTGGTCAGTAACCTGAGTTTCACCTTTGAAGCCAAGACGCATGTAGGTCTGGTCGCCATCTACATCTTTGTTGTCAGAGAAATAGTGCAGGCCGTCTACTTTACCGTACAGAt > 2:1756426/1‑149 (MQ=255) tCTTATATTCCCACTGGCCGTAACCGGTCAGCTGGTCAGTAACCTGAGTTTCACCTTTGAAGCCAAGACGCATGTAGGTCTGGTCGCCATCTACATCTTTGTTGTCAGCGAAATAGTGCAGGCCGTCTACTTTACCGTACAGATCTAAt > 2:839725/1‑149 (MQ=255) tCTTATATTCCCACTGGCCGTAACCGGTCAGCTGGTCAGTAACCTGAGTTTCACCTTTGAAGCCAAGACGCATGTAGGTCTGGTCGCCATCTACATCTTTGTTGTCAGAGAAATAGTGCAGGCCGTCTACTTTACCGTACAGAt > 1:727621/1‑144 (MQ=255) tCTTATATTCCCACTGGCCGTAACCGGTCAGCTGGTCAGTAACCTGAGGTTCACCTTTGAAGCCAAGCCGCTTGTAGGTCTGGTTGCCATCTACATCTTTGTTGTCAGAGAAATATTGCAGGCCGTCTACTTTACCGTCCAGCTCTAAt > 2:1559206/1‑149 (MQ=255) | ACGTCGGTCCAGGAAGTTACGTCATAAACAACGCCGTAGTTACGACCGTAGTCGAAAGAACCCACATCCTGGAATT‑TCAGACCTGCGAATGCCACACGGGTCCAGGAGTTGTTTTCGTTTTCAGCGCTGTTGCCCTGGATCTGATATTCCCACTGGCCGTAACCGGTCAGCTGGTCAGTAACCTGAGTTTCACCTTTGAAGCCAAGACGCATGTAGGTCTGGTCGCCATCTACATCTTTGTTGTCAGAGAAATAGTGCAGGCCGTCTACTTTACCGTACAGATCTAAT > CP009273/2305849‑2306136 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |