New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 3214250	NA (NA)	6 (0.120)	5/268	6.1	NA	noncoding (12/31 nt)	REP230 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP230 (repetitive extragenic palindromic) element; contains 1 REP sequences
	?	CP009273	= 3214257	NA (NA)					noncoding (19/31 nt)	REP230 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP230 (repetitive extragenic palindromic) element; contains 1 REP sequences
Rejected: Coverage evenness skew score above cutoff.

CCAAAACGATCCGCATTGAACCGCCACTGACACTGACCATTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCGTTAACAGCACGCTTTCACTGCCGTCATCGGTTTCCGCACACAACAGCATGCATTCCGACGTTTCACCACGCATTTT  >  CP009273/3214117‑3214390                                                                                                                                             |                                                                                                                                      ccAAAACGATCCGCATTGAACCGCCACTGACACTGACCATTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCg                                                                                                                                    <  2:16833/144‑1 (MQ=255)  cAAAACGATCCGCATTCAACCGCCACTGACACTGACCATTGAACAGTGTGAACAGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGc                                                                                                                                   >  2:595410/1‑144 (MQ=255)   aaaaCGATCCGCATTGAACCGCCACTGACACTGACCATTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATAGCACGTCGcc                                                                                                                                  >  2:122362/1‑144 (MQ=255)   aaaaCGATCCGCATTGAACCGCCACTGACACTGACCATTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCg                                                                                                                             >  1:769434/1‑149 (MQ=255)    aaaCGATCCGCATTGAACCGCCACTGACACTGACCATTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCa                                                                                                                                 <  2:697889/144‑1 (MQ=255)      aCGATCCGCATTGAACCGCCACTGACACTGACCATTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATc                                                                                                                               <  2:376285/144‑1 (MQ=255)      aCGATCCGCATTGAACCGCCACTGACACTGACCATTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATc                                                                                                                          <  1:103242/149‑1 (MQ=255)      aCGACCCGCATTGAACCGCCACTGACACTGACCATTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATc                                                                                                                               <  2:310201/144‑1 (MQ=255)         aTCCGCATTGAACCGCCACTGACACTGACCATTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGa                                                                                                                            >  2:411202/1‑144 (MQ=255)          tCCGCATTGAACCGCCACTGACACTGACCATTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATctgtt                                                                                                                           <  2:664246/144‑5 (MQ=255)          tCCGCATTGAACCGCCACTGACACTGACCATTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCtttt                                                                                                                      >  1:235165/1‑149 (MQ=255)          tCCGCAGTGAACCGCCACTGACACTGACCATTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCtttt                                                                                                                      <  1:72884/149‑1 (MQ=255)            ctcATTGAACCGCCACTGACACTGACCATTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTta                                                                                                                    <  1:289308/147‑1 (MQ=255)                ttGAACCGCCACTGACACTGACCATTGAACAGTGTTAACTGGTGATCAAAGCGGCGCGTAAGGCGCGGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATacg                                                                                                                <  1:104008/149‑1 (MQ=255)                ttGAACCGCCACTGACACTGACCATTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCttttt                                                                                                                     <  2:774690/144‑1 (MQ=255)                ttGAACCGCCACTGACACTGACCATTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATacg                                                                                                                >  1:169801/1‑149 (MQ=255)                   caCCGCCACTGACACTGACCATTGAACAGTGGGAACGGGTGATCAAAGCGGCGCGGAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATacgacg                                                                                                             <  1:384471/148‑1 (MQ=255)                        ccACTGACACTGACCATTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAGGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGTAc                                                                                                        >  1:628023/1‑149 (MQ=255)                           ctgacactgacCATTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGt                                                                                                          >  2:808757/1‑144 (MQ=255)                           ctgacactgacCATTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGt                                                                                                          >  2:647527/1‑144 (MQ=255)                            tgacactgacCATTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGGAGGccc                                                                                                    >  1:880216/1‑149 (MQ=255)                                     ccATTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAg                                                                                                <  2:318830/144‑1 (MQ=255)                                        ctGAACAGTGGGAACTGGTGAGCAAGGCGGCGCGCAAGGCGCTGCCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGCatcatc                                                                                        <  1:127645/148‑1 (MQ=255)                                         tggaCAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCAGGCGAGTAAGTGTCGAAGAAGCGTAATATCAAAGCGGATGGCGATACGACGTCGCCATCCGATCTTTTGATACGACGCGTACGCCCGCAGGcat                                                                                            <  2:68649/141‑1 (MQ=255)                                           accAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGAGGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGcatca                                                                                          <  2:93858/142‑1 (MQ=255)                                                tgtgAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGCATCATGCGCTccag                                                                                >  1:38268/1‑147 (MQ=255)                                                   gAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTcc                                                                                  >  2:454236/1‑144 (MQ=255)                                                     aCTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCgg                                                                                <  2:838106/144‑1 (MQ=255)                                                      cTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCGTTaa                                                                          <  1:138550/149‑1 (MQ=255)                                                       tGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCGTTAAc                                                                         <  1:857597/149‑1 (MQ=255)                                                            agcAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCGTTAAc                                                                         <  2:266934/142‑1 (MQ=255)                                                            aTCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCGTTAACAGCAc                                                                    >  1:542617/1‑149 (MQ=255)                                                            aTCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGAACTTTTTATACAACGCGTACGCCCGCAGGCATCACCCGCTCCGGCGTTAAc                                                                         >  2:300260/1‑144 (MQ=255)                                                              cAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCGTTAACCGCACGc                                                                  >  1:142468/1‑149 (MQ=255)                                                               aaaGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCGTTAACAGCACGCt                                                                 >  1:746753/1‑149 (MQ=255)                                                                aaGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCGTTAACAGCACGCtt                                                                >  1:536576/1‑149 (MQ=255)                                                                      cgcgTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGCCGTCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGCACCATCCGCTCCGGCGCTAACAGCACGCttt                                                               >  2:51649/1‑144 (MQ=255)                                                                        cgTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCGTTAACAGCACGCTTTCACTGcc                                                        >  1:734573/1‑149 (MQ=255)                                                                           aaGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTCTACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCGTTAACAGCACGCTTTCACTGCCGTc                                                     <  1:133537/149‑1 (MQ=255)                                                                              gcgcTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCGTTAACAGCACGCTTTCACTGCCGTCATc                                                  <  1:458890/149‑1 (MQ=255)                                                                                        ccATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCGTTAACAGCACGCTTTCACTGCCGTCATCGGTTTCCGca                                        <  1:366007/149‑1 (MQ=255)                                                                                           tGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGCCTCATCCGCTCCGCCGTCCACAGCCCGCTTCCCCTCCCCCCCTCGGTTTccc                                          >  2:397130/1‑143 (MQ=255)                                                                                           tGCCAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGTATCACACGATCTTTCGTTAACAGCACGCTTTCACTGCCGTCATCGGTTTCCGcacac                                     <  1:450477/149‑1 (MQ=255)                                                                                                      gtCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCGTTAACAGCACGCTTTCACTGCCGTCATCGGGTTCCGCACACAACAgcatgca                          >  1:265273/1‑149 (MQ=255)                                                                                                       tCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCGTTAACAGCACGCTTTCACTGCCGTCATCGGTTTCCGCACACGACAgcatgcat                         >  1:43483/1‑149 (MQ=255)                                                                                                       tCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCCGCGACATCGGCACGCTTTCACTGCCGTCATCGGTTTCCGCACACAACAgcatgcat                         >  1:260339/1‑149 (MQ=255)                                                                                                       tCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATACGATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCGTTAACAGCACGCTTTCACTGCCGTCATCGGTTTCCGCACACACCAgcatgcat                         >  1:494152/1‑149 (MQ=255)                                                                                                         gaagaaGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGAGCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCGTTAACAGCCCGCTTTCACTGCCGTCAACAATTTCCCCACACAAAAgcctc                            >  2:250858/1‑141 (MQ=255)                                                                                                              agCGTAATATCAAATCGGATGGTGATACGACGTCGCCATCCGACCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCGTTAACAGCACGCTTTCACTGCCGTCTTCGGTTTCCTCACACAACAGCATGCATTCCGACg                  <  1:470078/149‑1 (MQ=255)                                                                                                                      atCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCGTTAACAGCACGCTTTCACTGCCGTCATCGGTTTCCGCACACAACAGCATGCATTCCGACGttt               <  2:564591/144‑1 (MQ=255)                                                                                                                             cGGATGGCGATACGACGTCGCCATCCGATCTTTTTATCCGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCGTTAACAGCACGCTTTCACTGCCGTCATCGGTTTCCGCACACAACAGTATGCATTCCGACGTTTCACCACg        <  2:204233/144‑1 (MQ=255)                                                                                                                              ggATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCGTTAACAGCACGCTTTCACTGCCGTCATCGGTTTCCGCACACAACAGCATGCATTCCGACGTTTCACCACGCAtttt  >  1:653105/1‑149 (MQ=255)                                                                                                                                             |                                                                                                                                      CCAAAACGATCCGCATTGAACCGCCACTGACACTGACCATTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCGTTAACAGCACGCTTTCACTGCCGTCATCGGTTTCCGCACACAACAGCATGCATTCCGACGTTTCACCACGCATTTT  >  CP009273/3214117‑3214390

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.