Predicted mutation | ||||||
---|---|---|---|---|---|---|
evidence | seq id | position | mutation | annotation | gene | description |
RA | CP009273 | 444,779 | C→T | W440* (TGG→TAG) | cyoB ← | cytochrome o ubiquinol oxidase subunit I |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | CP009273 | 444,779 | 0 | C | T | 96.4% | 156.9 / NA | 57 | W440* (TGG→TAG) | cyoB | cytochrome o ubiquinol oxidase subunit I |
Reads supporting (aligned to +/- strand): ref base C (1/1); new base T (28/26); total (30/27) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
GTCAATCTGCTGGCTCAAACGACGGGTCATGCCCATGAAGCCCAGCGCATACAGTGGCATAAAGGCAACGAAGAAGCCGATGATCCAGAACCAGAACGCGCGTTTACCCCAGGTTTCGTTCAGTTTGAAACCGAACGCTTTAGGCCACCAGTAGGTCATCCCTGCGAAGCAGCCGAAGACCACGCCGCCGATGATCACGTTATGGAAGTGCGCAATCAGGAACAGGCTGTTATGCAGAACGAAGTCCGCGCCCGGTACGGCCAGCAGCACGCCAGTCATCCCGCCCA > CP009273/444634‑444920 | ttCAATCTGCTCGCCCAAAAGACGGGTCATGCCTATGAAGCCCAGCGCATACAGTGGCATAAAGGCAACGAAGAAGCCGATGATCCAGAACCAGAACGCGCGTTTACCCCAGGTTTCGTTCAGTTTGAAACCGAACGCTTTAGGctacc < 2:44392/148‑1 (MQ=255) tgctgGCTCAAACGACGGGTCATGCCCATGAAGCCCAGCGCATACAGTGGCAGAAAGGCAACGAAGAAGCCGATGATCCAGAACCAGAACGCGCGTTTACCCCAGGTTTCGCTATTGGTGAAACCGAACGCTTTAGGCTACCAGTAGGt < 2:219244/149‑1 (MQ=255) tgctgGCTCAAACGACGGGTCATGCCCAGGAAGCCCAGCGCATACAGTGGCATAAAGGCAACGAAGAAGCCGATGATCCAGAACCAGAACGCGCGTTTACCCCAGGTTTCGTTCAGTTTGAAACCGAACGCTTTAGGCTACCAGTAGGt < 1:75676/149‑1 (MQ=255) tgGCTCAAACGACGGGTCATGCCCATGAAGCCCAGCGCATACAGTGGCATAAAGGCAACGAAGAAGCCGATGATCCAGAACCAGAACGCGCGTTTACCCCAGGTTTCGTTCAGTTTGAAACCGAACGCTTTAGGCTACCAGTAGGTCAt > 1:445169/1‑149 (MQ=255) tCAAACGACGGGTCATGCCCATGAAGCCCAGCGCATACAGTCGCATAAAGGCAACGAAGAAGCCGACGATCCAGAACCAGAACGCGCGCTTACCCCAGGCTTCGCTCAGATTGAAACCGAACGCTACAGGCTCCCAGTAGGTCAGcccc > 2:685438/1‑148 (MQ=255) aaaCGACGGGTCATGCCCATGAAGCCCAGCGCATACAGTGGCATAAAGGCAACGAAGAAGCCGATGATCCAGAACCAGAACGCGCGTTTACCCCAGGTTTCGTTCAGGTTGAAACCGAACGCCTTAGGCTACCAGTAGGTCATCCCTGc > 2:18710/1‑149 (MQ=255) acgacgGGTCATGCCCATGAAGCCCAGCGCATACAGTGGCATAAAGGCAACGAAGAAGCCGATGATCCAGAACCAGAACGCGCGTTTACCCCAGGTTTCGTTCAGTTTGAAACCGAACGCTTTAGGCTACCAGTAGGTCATCCCTGCGa > 2:973353/1‑149 (MQ=255) cgacgGGTCATGCCCATGAAGCCCAGCGCATACAGTGGCATAAAGGCAACGAAGAAGCCGATGATCCAGAACCAGAACGCGCGTTTACCCCAGGTTTCGTTCAGTTTGAAACCGAACGCGCTACGCTACCAGTAGGTCATCCCTGCGaa < 1:990369/149‑1 (MQ=255) gacgGGTCATGCCCATGAAGCCCAGCGCATAGAGTGGCATGAAGGCAGCGAAGAAGCCGATGATCCAGAACCAGAACGCGCGTTTACCGCAGGTTTCGTTCAGTTTGAAACGGAACGCTTTAGGCTACCAGTAGGTCATCACTGCGAag > 2:480890/1‑149 (MQ=255) gacgGGTCATGCCCATGAAGCCCAGCGCATACAGGGGCATAAAGGCAACGAAGAAGCCGATGATCCAGAACCAGAACGCGAGTTTACCCCAGGTTTCGTTCAGTTTGAAACCGAACGCTTTAGGCTACCAGTAGGTCATCCCTGCGAag < 1:333881/149‑1 (MQ=255) atggggCAGGCCCATGAAGCCCAGCGCATACAGTGGCATAAAGGCAACGAAGAGGCCGATGATCCAGAACCAGACCGCGCGGTTACCCCAGGTTTCGTTCAGTTTGAAACCGAACGCTTTAGGCTACCAGTAGGTCATCCCTGCGAagc < 2:99076/147‑1 (MQ=255) gggTCATGCCCATGAAGCCCAGCGCATACAGTGGCATAAAGGCAACGAAGAAGCCGATGAACCAGAACCAGAACACGCGTTTACCCCAGGTTTCGGTCAGTTTGAAACCGAACGCTTTAGGCCACCAGTAGGCCATCCCTGCCGagcag > 2:821043/1‑149 (MQ=255) gggTCATGCCCATGAAGCCCAGCGCAGACAGTGGCATAAAGGCAACGAAGAAGCCGATGATCCAGAACCAGAACGCGCGTTTACCCCAGGTTTCGTTCAGTTTGAAACCGAACGCTTTAGGCTACCAGTAGGTCATCCCTGCGAagcag > 2:758560/1‑149 (MQ=255) ccATGAAGCCCAGCGCATACAGTGGCATAAAGGCAACGAAGAAGCCGATGATCCAGAACCAGAACGCGCGTTTACCCCAGGTTTCGTTCAGGTTGAAACCGAACGCTTTAGGCTACCAGTAGGTCATCCCTGCGAAGCAGCCGAAGAcc > 1:503508/1‑149 (MQ=255) ccATGAAGCCCAGCGCATACAGTGGCATAAAGGACACGAAGAAGCCGATGATCCAGAACCAGAAGGCGCGTTCACCCCAGGTTTCGATCAGTTTGAAACCGCACGCTATAGGCTACCAGTCGGTCATCCCTGCGAAGCAGCCGagaacg > 2:269776/1‑144 (MQ=255) aTGAAGCCCAGCGCATACAGGTGCATAAAGGCAACGAAGAAGCCGATGATCCAGAACCAGAACGCGCGTTTACCCCAGGTTTCGTTCAGTTTGAAACCGAACGCTTTAGGCTACCAGTAGGTCATCCCTGCGAAGCAGCCGAAGACCAc < 1:540494/149‑1 (MQ=255) cAGCGCATACAGTGGCATAAAGGCAACGAAGAAGCCGATGATCCAGAACCAGAACGCGCGTTTACCCCAGGTTTCGTTCAGTTTGAAACCGAACGCTTTAGGCTACCAGTAGGTCATCCCTGCGAAGCAGCCGAAGACCACGCCGCCga > 1:698172/1‑149 (MQ=255) gcATACAGTGACATAAAGGCAACGAAGAAGCCGATGATCCAGAACCAGAACGCGCGTTTACCCCAGGTTTCGTTCAGTTTGAAACCGAACGCTTTAGGCTACCAGTAGGTCATCCCTGCGAAGCAGCCAAAGACCACGCCGCCgatgat > 1:594472/1‑149 (MQ=255) cATACAGTGGCATAAAGGCAACGAAGAAGCCGATGATCCAGAACCAGAACGCGCGTTTACCCCACGTTTCGTTCAGTTTGAAACCGAACGCTTTAGCCAACCAGTAGGTCATCCCAGCGAAGCAGCCGAAGACCACGCCGCCgacgcac > 2:122501/1‑144 (MQ=255) aCAGTGGCATAAAGGCAACGAAGAAGCCGATGATCCAGAACCAGAACGCGCGTTTACCCCAGGTTTCGTTCAGTTTGAAACCGAACGCTTTAGGCTACCAGTAGGTCATCCCTGCGAAGCAGCCGAAGACCACGCCGCCGAGGATCACg > 2:307052/1‑149 (MQ=255) aTAAAGGCAACGAAGAAGCCGATGATCCAGAACCAGAACGCGCGTTTACCCCAGGTTTCGTTCAGTTTGAAACCGAACGCTTTAGGCTACCAGTAGGTCATCCCTGCGAAGCAGCCGAAGACCACGCCGCCGATGATCACGTTATGGaa < 1:890411/149‑1 (MQ=255) gggaaCGAAGAAGCCGATGATCCAGAACCAGAACGCGCGTTTACCCCAGGTTTCGTTCAGTTTGAAACCGAACGCTTTAGGCTACCAGTAGGTCATCCCTGCGAAGCAGCCGAAGACCACGCCGCCGATGATCACGGTATGGAAGTgcg < 2:616957/146‑1 (MQ=255) ggcaatcaacacgCCGATGACCCAGAATCAGAACGCGCGTTCACCCCAGGTTTCGCTCAGTTTGAAACCGAACGCTTTAGGCTACCAGTAGGGCATCCCTGCGAAGCAGCCGAAGACCACGCCGCCGATGATCACGTTATGGAAGTgcg < 1:124702/137‑1 (MQ=255) ggCCACGAAGAAGCCGATGATCCAGAACCAGAACGCGCGTTTACCCCCGGTTTCGTTCAGTTTGAAACCGAACGCTTTAGGCCCCCAGTAGGTAAACCCTGCGAAGCAGCCGAAGACCAAGCCGCCGATGATCACGTTATGGAAGTgcg < 2:366473/149‑1 (MQ=255) aagaagCCGATGATCCAGAACCAGAACGCGCGTTTACCCCAGGTTTCGTTCAGTTTGAAACCGAACGCTTTAGGCTACCAGTAGGTCATCCCTGCGAAGCAGCCGAAGACCACGCCGCCGATGATCACGTTATGGAAGTGCGCAATCAg < 2:932634/149‑1 (MQ=255) gaagCCGATGATCCAGAACCAGAACGCGCGTTTACCCCAGGTTTCGTTCAGTTTGAAACCGAACGCTTTAGGCTACCAGTAGGTCATCCCTGCGAAGCAGCCGAAGACCACGCCGCCGATGATCACGTTATGGAAGTGCGCAATCAGGa < 1:203864/149‑1 (MQ=255) gCCGATGATCCAGAACCAGAACGCGCGTTTACCCCAGGTTTCGTTCAGTTTGAAACCGAACGCTTTAGGCTACCAGTAGGTCATCCCTGCGAAGCAGCCGAAGACCACGCCGCCGATGATCACGTTATGGAAGTGCGCAATCAGGAAcg > 2:933986/1‑148 (MQ=255) gCCGATGATCCAGAACCAGAACGCGCGTTTACCCCAGGTTTCGTTCAGTTTGAAACCGAACGCTTTAGGCTACCAGTAGGTCATCCCTGCGAAGCAGCCGAAGACCACGCCGCCGATGATCACGTTATGGAAGTGCGCAATCAGGAACa > 1:797892/1‑149 (MQ=255) gCCGATGATCCAGAACCAGAACGCGCGTTTACCCCAGGTTTCGTTCAGTTTGAAACCGAACGCGTTAGGCTACCCGTAGGTCATCCCTGCGAAGCAGCCGAAGACCACGCCGCCGAGGAGCCCGTTATGGAAGTGCGCAATCAgaggaa > 1:87576/1‑144 (MQ=255) ccGATGCTCCAGAACCAGAACGCGCGTTTACCCCAGGTTTCGTTCAGTTTGAAACCGAGCGCTTTAGGCTACCAGTAGGTCATCCCTGCGAAGCAGCCGAAGACCACGCCGCCGATGATCACGTTATGGAAGCGCGCAATCCCGAACAg > 2:551200/1‑149 (MQ=255) gatgatCCAGAACCAGAACGCGCGTTTACCCCAGGTTTCGTTCAGTTTGAAACCGAACGCTTTAGGCTACCAGTAGGTCATCCCTGCGAAGCAGCCGAAGACCACGCCGCCGATGATCACGTTATGGAAGTGCGCACTCAGGGACAGGc > 2:237280/1‑149 (MQ=255) aggccccagaaccagaaCGCGCGTTTACCCCAGGTTTCGTTCAGTTTGAAACCGAACGCTTTAGGCTACCAGTAGGTCATCCCTGCGAAGCAGCCGAAGACCACGCCGCCGATGATCACGTTATGGAAGTGCGCAATCAGGAACAGGCt < 2:586643/144‑1 (MQ=255) atCCAGAACCAGAACGCGCGTTTACCCCAGGTTTCGTTCAGTTTGAAACCGAACGCTTTAGGCTACCAGTAGGTCATCCCTGCGAAGCAGCCGAATACCACGCCGCCGATGATCACGTTATGGAAGTGCGCAATCAGGAACAGGCTGtt < 2:553579/149‑1 (MQ=255) ccagaaccagaaCGCGCGTTTACCCCAGGTTTCGTTCAGTTTGAAACCGAACGCTTTAGGCTACCAGTAGGTCATCCCTGCGAAGCAGCCGAAGACCACGCCGCCGATGATCACGTTATGGAAGTGCGCAATCAGGAACAGGCTGTTAt > 1:175659/1‑149 (MQ=255) ccagaaccagaaCGCGCGTTTACCCCAGGTTTCGTTCAGTTTGAAACCGAACGCTTTAGGCTACCAGTAGGTCATCCCTGCGAAGCAGCCGAAGACCACGCCGCCGATGATCACGTTATGGAAGTGCGCAATCAGGAACAGGCGGTTAt > 1:1174/1‑149 (MQ=255) cagaaccagaacGCGCGTTTACCCCAGGTTTCGTTCAGTTTGAAACCGAACGCTTTAGGCTACCAGTAGGTCATCCCTGCGAAGCAGCCGAAGACCACGCCGCCGATGATCACGTTATGGAAGTGCGCAATCAGGAACAGGCTGTTATg < 2:315304/149‑1 (MQ=255) cagaaccagaacGCGCGTTTAACCCAGGTTTCGTCCAGTTTGACACCGAACGCTATAGCCTACCAGTAGGCCACCCCTGCGAAGCAGCCGAAGACCACGCCGCCGATGATCACGTTATGGAAGTGCGCAATCAGGAACAGGCTGTTATg > 2:291142/1‑149 (MQ=255) agaaccggaacGCGCGTCTACCCCAGGTTTAGCTCAGTTTGAAACCGAACGCTTTAGGCTACCAGTAGGTCATCCCTGCGAAGCAGCCGAAGACCACGCCGCCGATGATCACGTTATGGAAGTGCGCAATCAGGAACAGGCTGTTATGc < 1:834/149‑1 (MQ=255) acGCGCGTTTCCCCCAGGTTTCGTTCAGTTTGAAACCGAACGCTTTAGGCTACCAGTAGGTCATCCCTGCGAAGCAGCCGAAGACCACGCCGCCGATGATCACGTTATGGAAGTGCGCAATCAGGAACAGGCTGTTATGCAGAACGAAg < 2:992193/149‑1 (MQ=255) gcgTTTACCCCAGGTTTCGTTCAGTTTGAAACCGAACGCTTTAGGCTACCAGTAGGTCATCCCTGCGAAGCAGCCGAAGACCACGCCGCCGATGATCACGTTATGGAAGTGCGCAATCAGGAACAGGCTGTTATGCAGAACGAAGTCcg > 1:551514/1‑149 (MQ=255) gTTTGCCCCAGGTTTCGTTCAGTTTGAAACCGAACGCTTTAGGCTACCAGTAGGTCATCCCTGCGAAGCAGCCGAAGACCACGCCGCCGATGATCACGTTATGGAAGTGCGCAATCAGGAACAGGCTGTTATGCAGAACGAAGTCcgcg < 2:839913/149‑1 (MQ=255) gTTTCCCCCAGGGTTCGTGCAGTTTGAAACCGAACGCTATAGGGTAGCAGTAGGTCATCCCGGCGAAGCAGCCGAAGACCACGCCGCCGATGAGTACTTTATGGAAGTGCGCAATCAGGAACAGGCTGTTATGCAGAACGAAGTCcgcg < 2:356913/149‑1 (MQ=255) gTTTACCCCAGGTTTCGTTCAGTTTGAAACCGAACGCTTTAGGCTACCAGTAGGTCATCCCTGCGAAGCAGCCGAAGACCACGCCGCCGATGATCACGTTATGGAAGTGCGCAATCAGGAACAGGCTGTTATGCAGAACGAAGTCcgcg < 2:445169/149‑1 (MQ=255) cccAGGTTTCGTTCAGTTTGAAACCGAAAGCTATAGGCTACCAGTACGTCATCCCGGCGAAGCAGCCGAGGACAACGCCGCCGCTGATCACGAGATGGAAGTGCGCAATCAGGAACAGGCGGTTAGACAGAACGAAGGAcgcggcggat > 2:251471/1‑143 (MQ=255) ccAGGTTTCGTTCAGTTTGAAACCGAACGCTTTAGGCTACCATTAGGTCATCCCTGCGAAGCAGCCGAAGACCACGCCGCCGATGATCACGTTATGGAAGTGCGCAATCAGGAACAGGCTGTTATGCAGAACGAAGTCCGCGCCCGGTa < 1:868886/149‑1 (MQ=255) ccAGGTTTCGTTCAGTTTGAAACCGAACGCTTTAGGCTACCAGTAGGTCATCCCTGCGAAGCAGCCGAAGGACACGCCGCCGATGGACTGGTTATGGAAGTGTGCAATGAGGAACAGGCTGTTATGCATGACGAGGTCCGCGCCGGGTa > 2:340045/1‑149 (MQ=255) atggttCGTTCAGTTTGAAACCGAACGCTTTAGGCTACCAGTAGGTCATCCCTGCGAAGCAGCCGAAGACCACGCCGCCGATGATCACGTTATGGAAGTGCGCAATCAGGAACAGGCTGTTATGCAGAACGAAGTCCGCGCCCGGTACg < 2:192945/145‑1 (MQ=255) gTTTCCTTCAGTTTGAAACCGAACCCTTTAGGCTACCAGTAGGTCATCCCTGCGAAGCAGCCGAAGACCACGCCGCCGATGATCACGTTATGGAAGTGCGCAATCAGGAACAGGCTGTTATGCAGAACGAAGTCCGCGCCCGGTACGGc < 2:67775/149‑1 (MQ=255) ttCAGTTTGAAACCGAACGCTTTAGGCTACCGGTAGGTCATCCCTGCGAAGCAGCCGAAGACCACGCCGCCGATGATCACGTTATGGAAGTGCGCGATCAGGAACAGGCTGTTATGCAGAACGAAGCGCGCGCCCGGTACGGCccgcgg > 2:774644/1‑147 (MQ=255) tCAGTGTGCAAACGAACGCTTCAGGCTATCAGTAGGTCATCCCTGCGAAGCAGCCGAAGACCACGCCGCCGATGATCACGTTATGGAAGTGCGCAATCAGGAACAGGCTGTTATGCAGAACGAAGTCCGCGCCCGGttatgtgagtagc < 2:172904/149‑13 (MQ=255) ttGAAACCGAACGCGATAAGCTACCAGTAGACACTGAATGGGAAGCAGCCGAAGACCACGCCGCCGATGATCACGTTATGGAAGTGCGCAATCAGGAACAGGCTGTTATGCAGAACGAAGTCCGCGCCCGGTACGGCCAGCAGCACGcc > 1:738099/1‑149 (MQ=255) tGAAACCGAACGCTTTAGGCTACCAGTAGGTCATCCCTGCGAAGCAGCCGAAGACCACGCCGCCGATGATCACGTTATGGAAGTGCGCAATCAGGAACAGGCTGTTATGCAGAACGAAGTCCGCGCCCGGTACGGCCAGCAGCACGCCa < 1:829469/149‑1 (MQ=255) tGAAACCGAACGCCTTAGGCTACCAGTAGGTCATCCCTGCGAAGCAGCCGAAGACCACGCCGCCGATGATCACGTTATGGAAGTGCGCAATCAGGAACAGGCTGTTATGCAGAACGAAGTCCGCGCCCGGTACGGCCAGCAGCACGCCa < 1:335534/149‑1 (MQ=255) aaaCCGAACGCTTTAGGCTACCAGTAGGTCATCCCTGCGAAGCAGCCGAAGACCACGCCGCCGATGATCACGTTATGGAAGTGCGCAATCAGGAACAGGCTGTTATGCAGAACGAAGTCCGCGCCCGGTACGGCCAGCAGCACGCCAGt > 2:96688/1‑149 (MQ=255) aCGCTTCAGGCTACCAGTAGGTCATCCCTGCGAAGCAGCCGAAGACCACGCCGCCGATGATCACGTTATGGAAGTGCGCAATCAGGAACAGGCTGTTATGCAGAACGAAGTCCGCGCCCGGTACGGCCAGCAGCACGCCAGTCATCCCg < 1:237167/149‑1 (MQ=255) tttAGGCTACCAGTAGGTCATCCCTGCGAAGCAGCCGAAGACCACGCCGCCGATGATCACGTTATGGAAGTGCGCAATCAGGAACAGGCTGTTATGCAGAACGAAGTCCGCGCCCGGTACGGCCAGCAGCACGCCGGTCATCCCGcccc > 1:750060/1‑148 (MQ=255) tttAGGCTACCAGTAGGTCATCCCTGCGAAGCAGCCGAAGACCACGCCGCCGATGATCACGTTATGGAAGTGCGCAATCAGGAACAGGCTGTTATGCAGAACGAAGTCCGCGCCCGGTACGGCCAGCAGCACGCCAGTCATCCCGCCCa > 1:799070/1‑149 (MQ=255) tttAGGCTACCAGTAGGTCATCCCTGCGAAGCAGCCGAAGACCACGCCGCCGATGATCACGTTATGGAAGTGCGCAATCAGGAACAGGCTGTTATGCAGAACGAAGTCCGCGCCCGGTACGGCCAGCAGCACGCCAGTCATCCCGCCCa > 1:170860/1‑149 (MQ=255) | GTCAATCTGCTGGCTCAAACGACGGGTCATGCCCATGAAGCCCAGCGCATACAGTGGCATAAAGGCAACGAAGAAGCCGATGATCCAGAACCAGAACGCGCGTTTACCCCAGGTTTCGTTCAGTTTGAAACCGAACGCTTTAGGCCACCAGTAGGTCATCCCTGCGAAGCAGCCGAAGACCACGCCGCCGATGATCACGTTATGGAAGTGCGCAATCAGGAACAGGCTGTTATGCAGAACGAAGTCCGCGCCCGGTACGGCCAGCAGCACGCCAGTCATCCCGCCCA > CP009273/444634‑444920 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |