| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC JC | CP009273 | 2,400,257 | IS5 (+) +4 bp | intergenic (‑137/‑780) | lrhA ← / → alaA | transcriptional repressor of flagellar, motility and chemotaxis genes/valine‑pyruvate aminotransferase 2 |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 2282398 = | NA (NA) | 58 (0.770) | 47/296 | 0.7 | 100% | noncoding (1195/1195 nt) | IS5 | repeat region |
| ? | CP009273 | 2400257 = | 0 (0.000) | intergenic (‑137/‑783) | lrhA/alaA | transcriptional repressor of flagellar, motility and chemotaxis genes/valine‑pyruvate aminotransferase 2 | |||||
| * | ? | CP009273 | = 2283592 | NA (NA) | 109 (1.450) | 71/296 | 0.0 | 100% | noncoding (1/1195 nt) | IS5 | repeat region |
| ? | CP009273 | = 2400260 | 0 (0.000) | intergenic (‑140/‑780) | lrhA/alaA | transcriptional repressor of flagellar, motility and chemotaxis genes/valine‑pyruvate aminotransferase 2 | |||||
Only 100 of 169 total aligned reads displayed.
ACTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCAC‑ATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGTTCCAC > CP009273/2400112‑2400407 | aCTTATCATTTATTATCACTTTCTGGCGTCTTATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGAAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGTAAGTAAAAATGCATATGAGTTGCACTaa < 1:743066/149‑1 (MQ=255) cTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCCATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGAAGAAAGACAAAAGGCATATGAGTTGAAGTAAg < 2:614072‑M2/149‑2 (MQ=255) atatTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTACATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgc > 1:311984‑M2/1‑140 (MQ=255) tattatCACTTACTGGCGGCTCATACTGACCTGGTTAACGCTGTGCACACACAAACCAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtcag > 2:938777‑M2/1‑139 (MQ=255) atCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaaca > 2:66469‑M2/1‑135 (MQ=255) tCGCTTGCTGGCCGCTCCTGCTGAGCTGGTGAGTGCTGTGCACGCGCGAACAAGCAAGTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaccaa > 2:89403‑M2/1‑134 (MQ=255) tCCCTTACTGGCGGTGCATACTGAGCTGGTTAATGCTGTGCACACACAAACAGGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGGACTCGGACGCGAGTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaa > 2:682021‑M2/1‑134 (MQ=255) tCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCAGATGAGTTGCACTAAggaaggtccgaacaa < 2:770190‑M2/149‑16 (MQ=255) aCTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTGGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaagt < 1:653652‑M2/149‑18 (MQ=255) aaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagcaaacatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAAAAAGCGACTCAC‑CTTGt > 1:492099‑M2/128‑149 (MQ=255) tACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaagtccc > 1:654656‑M2/1‑129 (MQ=255) tggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAAAAAGCGACTCAC‑ATTGTTcc < 1:21718‑M2/25‑1 (MQ=255) aCTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaagtccct > 1:630055‑M2/1‑128 (MQ=255) tGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaagtccctga > 1:958668‑M2/1‑126 (MQ=255) gcgaagagacggactaaatatgctgattcaaggcatttacgggagaaaatatcggcttagacattaagaaatgaaaggacttagtcagccgagaagaatttccccgcttattcgcacctgccCTAAAAAAGCGACTCAC‑ATTGTTCCGt < 1:253478‑M2/27‑1 (MQ=255) gcgaagaaacgttctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccacttatccccaccttccCTAAAAAAGCGACTCAC‑ATTGTTCCGt < 1:1215854‑M2/27‑1 (MQ=255) gcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaattgaaatttctgtgtcagccgagaagaatttccccgcttattcgcaccttccCTAAAAAAGCGACTCAC‑ATTGTTCCGt < 1:19542‑M2/27‑1 (MQ=255) gaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAAAAAGCGACTCAC‑ATTGTTCCGTta > 1:1053689‑M2/121‑149 (MQ=255) gcTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaagtccctgatatga > 2:1222858‑M2/1‑121 (MQ=255) aaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAAAAAGCGACTCAC‑ATTGTTCCGTTATAAt < 1:722046‑M2/33‑1 (MQ=255) tACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaagtccctgatatgagatca < 1:207947‑M2/149‑34 (MQ=255) gacTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCCTCCGGAACCCGGACGCAAGTAAAAATGCATATAAGTTGCACTAAggaagatgcgaacaagtccctgatatgagagca < 2:216503‑M2/148‑34 (MQ=255) tctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAAAAAGCGACTCAC‑ATTGTTCCGTTATAATGCCTGa > 2:702538‑M2/111‑149 (MQ=255) aataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatcactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAAAAAGCGACTCAC‑ATTGTTCCGTTATAATGCCTGAAGTa > 1:843554‑M2/107‑149 (MQ=255) gTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaagtccctgatatgagatcaagtttgtcat < 1:614928‑M2/149‑44 (MQ=255) tgattcaaggcatttacgggagaaaaaatcgtctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAAAAAGCGACTCAC‑CTCGTTCCGTTATAATGCCTGAAGTAGATcaca < 1:297775‑M2/50‑1 (MQ=255) gCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTCGCACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggag > 2:791367‑M2/1‑100 (MQ=255) cTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagc < 2:53938‑M2/149‑51 (MQ=255) tgtgCACCCCTCAACAAGCAATTCCATTTCTAATGTGCCTCCCTGGCAGTTTCATCTGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagcc > 1:88349‑M2/1‑98 (MQ=255) gtgCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcctctggagcca < 1:389461‑M2/149‑53 (MQ=255) aggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccacgcttattcgcaccttccCTAAAAAAGCGACTCAC‑ATTGTTCCGTTATAATGCCTGAAGTAGATCACAGaatatg > 2:35911‑M2/93‑148 (MQ=255) ttacgggagaaaaaaccggctcaaacatgaagaaatgaaatgactcggtcagtcgagaagactttccccgcttattcgcaccttccCTAAAAAAGTGACTCAC‑ATTGTTCCGTTATAATCCCTGAAGTAGATCACAGAATATATCTTCa < 2:679400‑M2/63‑1 (MQ=255) cacaAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaaca > 1:976162‑M2/1‑90 (MQ=255) tacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAAAAAGCGACCCAC‑ATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAg < 2:1076304‑M2/64‑1 (MQ=255) gacgcgataaaaaatcgtctcaacattgcagaaatgaatttactgcgtcagccgagatgaatttccccgcttattcgcaccttccCTAAAAAAGCGACTCAC‑ATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAg < 1:431899‑M2/64‑1 (MQ=255) acaaacaaGCAATTCCATTTGTAATCTAACTGTGCTTTTTTTTCATCCGCAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctagagccatagaacag < 2:266732‑M2/149‑61 (MQ=255) caaacaaGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaagtccctgatatgagagcatgtttgtcatctggagccatagaacagg > 1:888201‑M2/1‑88 (MQ=255) acgggagaaaaaatcggctcaatcatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAAAAAGCGACTCAC‑ATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAgg < 1:718851‑M2/65‑1 (MQ=255) ggagaaaaaatcggctcaaacagtaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaacatacCTAAAAAAGCGACTCAC‑ATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGAt < 2:155310‑M2/68‑1 (MQ=255) acaaGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggtt < 1:652093‑M2/149‑65 (MQ=255) gagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAAAAAGCGACTCAC‑ATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATc > 1:1226007‑M2/81‑149 (MQ=255) gCAATTGCATTGGTAATGTGCCTCTCTGGGGGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggggccataggacagggttcatc > 2:602384‑M2/1‑81 (MQ=255) aaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatatccccgcttattcgcaccttccCTAAAAAAGCGACTCAC‑ATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCa > 2:988696‑M2/78‑149 (MQ=255) aaTTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcat < 1:701004‑M2/149‑71 (MQ=255) ttCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGTAACCCTGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatga < 1:1216375‑M2/149‑73 (MQ=255) ctcCATTTCCAACGTGCCTCCCTGGCAGGTCCAGCCGGAAACCAAAAAAAAAAAAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatga > 2:954762‑M2/2‑77 (MQ=255) aagtggctcaaacatgaagcaatgaaatgactgggtcagccgagaagaatttccccgcttattcgcaccttccCTAAAAAAGCGACTCAC‑ATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATc < 2:247595‑M2/76‑1 (MQ=255) ccATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagt < 1:1062059‑M2/149‑75 (MQ=255) cggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAAAAAGCGACTCAC‑ATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTAt < 1:1124797‑M2/79‑1 (MQ=255) cggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAAAAAGCGACTCAC‑ATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTAt < 2:843554‑M2/79‑1 (MQ=255) cATTTGTAATGTGCCTCACTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtc > 1:53938‑M2/1‑74 (MQ=255) ctcaaacatgatgatatgaaatgtctgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAAAAAGCGACTCAC‑ATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTaa < 1:244066‑M2/82‑1 (MQ=255) tcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAAAAAGCGACTCAC‑ATTGTTACGTTATAATGCCTGAAGTAGATCACAGAATATATCTCCCGGGGTCGCATATATATTAAg > 2:499660‑M2/67‑149 (MQ=255) ccTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaagcccctacttcggcatctggtttgtcatctggatccatagaacagggttcatcatgagtcatcaacttacctt > 2:1180264‑M2/1‑61 (MQ=255) cTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccg < 1:922570‑M2/149‑94 (MQ=255) atgaaagcactgagtcagccgagaagaatttccccgcttattcgctccttccCTAAAAAAGCGACTCAC‑ATTGTTCCGTTATAATGCCTGAAGGAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCtttt < 1:370560‑M2/97‑1 (MQ=255) ttgcaGTTGCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGCTGCACTAAggaaggagcgaacaagacccggatatgagatcatgattgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccga < 2:1163034‑M2/147‑95 (MQ=255) tttCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtga < 1:26374‑M2/149‑101 (MQ=255) gttcATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtga < 1:663941‑M2/148‑101 (MQ=255) tCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacaggggtcataatgagtcatcaacttaccttcgccgacagtgacttca < 2:484973‑M2/149‑106 (MQ=255) ccGGAACCCGGGCGAAAGTAAAAATGCATTTGAGTTGCACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcag > 2:749256‑M2/1‑43 (MQ=255) cGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagc > 1:157333‑M2/1‑42 (MQ=255) cGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggtacatcatgagtcatcaacttaccttcgccgacagtgaattcagc < 1:48621‑M2/149‑108 (MQ=255) ggAACCCGGACGAAAGTAAAAATTCATATGAGTTGCACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagca > 1:764886‑M2/1‑41 (MQ=255) ggAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaagtccctgttatgagatcttgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagca > 1:7215‑M2/1‑41 (MQ=255) agccgagaagaatttccccgcttattcgcaccttccCTAAAAAAGCGACTCAC‑ATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTCCTCACTCTTTTCTATTTATGACATgcg > 2:1167274‑M2/37‑149 (MQ=255) gccgagaagaatttccccgcttattcgcaccttccCTAAAAAAGCGACTCAC‑ATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATgcgc < 2:1019705‑M2/114‑1 (MQ=255) ccGGACGAAAGTAAAAATGCATATGAGTAGCACTAAggaaggtgcgaacaagtccctgatatgtgatcatgtttgtcatctggagccatagaacagggttcatcatgagtcgtcaacttaccttcgccgacagtgaattcagcagtaag < 1:802611‑M2/149‑114 (MQ=255) cGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagc > 1:952993‑M2/1‑35 (MQ=255) cGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaagtccctgatatgagaacaagtttgtaatctggagccatagaacagggttcatcatgaggcatcaacttaccttcgccgacagtgaattcagcagtaagc < 1:355935‑M2/149‑115 (MQ=255) gACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgc > 2:971536‑M2/1‑33 (MQ=255) aagaatttccccgcttattcgcaccttccCTAAAAAAGCGTCTCAC‑ATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCGTGttt < 1:708720‑M2/120‑1 (MQ=255) aagaatttccccgcttattcgcaccttccCTAAAAAAGCGACTCAC‑ATTGTTCCGTTATAATGCCTGAAGTAGCTCACAGAATATATCTTCAGGGATCCCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCGTGttt > 1:41033‑M2/30‑149 (MQ=255) gaatttccccgcttattcgcaccttccCTAAAAAAGCGACTCAC‑ATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGt < 1:1048898‑M2/122‑1 (MQ=255) tAAAAATGCATATGAGTTACACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgacttcagcagtacgcgccgtcagac < 2:772258‑M2/149‑125 (MQ=255) gcttattcgcaccttccCTAAAAAAGCGACTCAC‑ATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGTAtaaatgtaa < 1:402888‑M2/132‑1 (MQ=255) attcgcaccttccCTAAAAAAGCGACTCAC‑ATTGTTCCGTTATAAAGCCTGAAGTAGATCACAGAATATATCTTCAGGGGTCGCAGAGCGATTAAGTTACTCACTCTTTTCTATTTATAAAATGAGCGTCTTTGTATgaatggaaaagt > 2:1083895‑M2/14‑149 (MQ=255) ttcgcaccttccCTAAAAAAGCGACTCAC‑ATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCGGGTTtgtataaatgtaaagttg > 2:821061‑M2/13‑145 (MQ=255) cgctccttccCTAAAAAAGCGACTCAC‑ATTGTTTCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAg < 1:382349‑M2/139‑1 (MQ=255) atTAGTTGCACTAAggaaggtgcgaacaagtccatgacctgagattttgcttgccaactggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagaga > 2:922570‑M2/1‑14 (MQ=255) gAGTTGCACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagatt < 1:174310‑M2/149‑138 (MQ=255) accttccCTAAAAAAGCGACTCAC‑ATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATGTATGACATGCGCGTGTTAGTATAACTGTAAATGTGAGTcc > 2:497962‑M2/8‑149 (MQ=255) gTTGCACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagatttt > 2:37319‑M2/1‑10 (MQ=255) gTTGCACTAAggaaggtgcgaacaagtcactgatatgagatcatgtttgtcatctggagccatagaacaggggtcatcatgagtcatcaacttaccttcgacgacagtgaattcagcagtaagcgccgtaagaccacagaagcagcgtt < 2:892044‑M2/149‑140 (MQ=255) ttGCACTAAggatggtccgaacaagtccctgatatgagatcatgtttgtcatctggagccatagattagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttc > 1:93126‑M2/1‑9 (MQ=255) accCTAAAAAAGCGACTCAA‑ATTGTTCCGTTATAATGCCTGAATTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAATTTACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGt < 2:104957‑M2/146‑1 (MQ=255) ccCTAAAAAAGCGACCCACTATTG‑TCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGtt < 2:1007273‑M2/147‑1 (MQ=255) aCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctgtagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgt > 1:365585‑M2/1‑5 (MQ=255) aCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgt < 2:415974‑M2/149‑145 (MQ=255) aCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgt < 1:254708‑M2/149‑145 (MQ=255) cTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaacagagcttttcttgtc < 2:152680‑M2/149‑146 (MQ=255) cTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtc > 2:362044‑M2/1‑4 (MQ=255) tAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcc < 1:139202‑M2/149‑147 (MQ=255) tAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttattgtcc < 1:1172990‑M2/149‑147 (MQ=255) tAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacactgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcc > 2:803321‑M2/1‑3 (MQ=255) tAAggaaggtgcgaacaagcccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcc > 2:394987‑M2/1‑3 (MQ=255) tAAAAAAGCGACTCAC‑ATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGCTCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGTTcaa > 2:353019/1‑147 (MQ=255) aaggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaacgagattttcttgtccc > 1:770190‑M2/1‑2 (MQ=255) aaggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtccc > 1:1085376‑M2/1‑2 (MQ=255) aggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaaaagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccggaaaagagattttcttgtcccg < 2:42677‑M2/149‑149 (MQ=255) | ACTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCAC‑ATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGTTCCAC > CP009273/2400112‑2400407 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |