New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	360104 =	NA (NA)	39 (1.460)	36/276	NT	NA	intergenic (‑38/+557)	lacZ/lacI	pseudogene, truncated/DNA‑binding transcriptional repressor
	?	CP009273	= 360286	NA (NA)					intergenic (‑220/+375)	lacZ/lacI	pseudogene, truncated/DNA‑binding transcriptional repressor

CAGGCAGTTCAATCAACTGTTTACCTTGTGGAGCGACATCCAGAGGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCG‑ATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTT  >  CP009273/359964‑360248                                                                                                                                              |                                                                                                                                                 cAGGCAGTTCAATCAACTGTTTACCTTGTGGAGCGACATCCAGAGGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCG‑GTGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTgg                                                                                                                                          >  2:115103/1‑149 (MQ=255)    gCAGTTCAATCAACTGTTTACCTTGTGGAGCGACATCCAGAGGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAG‑TCCGCACTATAAGCGGCCAAACAGGAGAATTCCGGTCCCCAATTCCTGGCAg                                                                                                                                       >  1:107184/1‑149 (MQ=255)        ttCAATCAACTGTTTACCTTGTGGAGCGACATCCAGAGGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCG‑ATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTa                                                                                                                                   >  1:48936/1‑149 (MQ=255)               aaCTGTTTACCTTGTGGAGCGACATCCAGAGGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCG‑ATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATCCCTGGCGGTTTATggcggg                                                                                                                            >  2:192714/1‑149 (MQ=255)                        ccTTGTGGAGCGACATCCAGAGGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCG‑ATGATAAGCAATCAAACATGAGAATTCCGATCCCCAATACCTGGCAGTTTATGGAAGGCGCCCTGcc                                                                                                                   >  2:458479/1‑149 (MQ=255)                         cTTGTGGAGCGACATCCAGAGGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCG‑ATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGccc                                                                                                                  >  2:44391/1‑149 (MQ=255)                           tgtgGCGCGACATCCAGAGGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCG‑ATGATAAGCTGTCAAACATGAGAATGCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGc                                                                                                                <  2:169380/149‑1 (MQ=255)                               gAGCGACATCCAGAGGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCG‑ATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCAcc                                                                                                            >  2:233226/1‑149 (MQ=255)                                                  ttCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCG‑ATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGc                                                                                         <  2:60550/149‑1 (MQ=255)                                                     aCCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCG‑ATGATAAGCTGTCAAACATGAGAATTCCGATCCTCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGAAAc                                                                                      >  1:316578/1‑149 (MQ=255)                                                      ccgccgcctcgCGGCTTACCATCCAGCGCCACCTTCCCGTGCAGGAGCTCCG‑ATGATACCCTTTCAAACGTCAGAACTCCGATCGCCACTTCCTCTCAGTCTATGGCGGGCGTCCCGCCCGCCACCCCCCCGGCCGTTGCTTCGCAACg                                                                                     <  2:279476/139‑1 (MQ=255)                                                           tGCCAGCGTCTTCCCCTCCAGCGCCACCATCCAGTGCTTGAGCTCGG‑TTGATAAGGTGTCAAACATGAGAGTTGCGACCCCCCATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGGTTCGCAACGTTcta                                                                                <  2:136079/149‑3 (MQ=21)                                                                           tCCAGCGCCACCATCCAGTGCAGGAGCTCCG‑ATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTAGGGCGGGCGGCCTGCCCGCCACCCTCCGGGCCCGTGCCTCGCCACGTTCCAACCCGCGCCCGGCGGa                                                                >  2:233313/1‑149 (MQ=37)                                                                            ccAGCGCCACCATCCAGTGCAGGAGCTCCG‑ATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGccgggagcggat                                                               <  2:465909/149‑12 (MQ=255)                                                                                cgcCACCATCCAGTGCAGGAGCTCCG‑ATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGt                                                           >  1:107640/1‑149 (MQ=255)                                                                                 gcCACCATCCAGTGCAGGAGCTCCG‑ATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTc                                                          >  1:405301/1‑149 (MQ=255)                                                                                    accaTCCAGTGCAGGAGCTCCG‑ATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTa                                                       >  2:296909/1‑149 (MQ=255)                                                                                         tcAGTGCAGGAGCTCCG‑GTGATACGCTGTCAAACATGGGAATTCCGATCCCCAATCCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAg                                                  <  1:56192/148‑1 (MQ=255)                                                                                           aGTGCAGGAGCTCCG‑ATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGga                                                >  2:266787/1‑149 (MQ=255)                                                                                           aGTGCAGGAGCTCCG‑ATGATAAGCTGTCAAACATGAGAATTCCGATCCACAATTCCTGGCTGTTTATTACGGGCGGCCTGCCCGCCACCCTCCGGGCCGTTGCGTCGCAACCTTCAAATTCGCTCCCGGCGGCTTTGTCCTACGCAgca                                                >  2:451059/1‑147 (MQ=21)                                                                                             cgCAGGAGCTCCG‑ATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGgaga                                              <  1:376510/148‑1 (MQ=255)                                                                                                     cTCCG‑ATGATAAGCTGTCAAACATGAGAATCCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCAc                                      <  1:44391/149‑1 (MQ=255)                                                                                                                  gCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAacaaca                          <  2:113839/149‑1 (MQ=255)                                                                                                                  gCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAacaaca                          >  1:60755/1‑149 (MQ=255)                                                                                                                      tCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGAtc                      >  1:210066/1‑148 (MQ=255)                                                                                                                         tactggggtgccccGAGCCCTAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATaaaa                   <  2:210066/137‑1 (MQ=11)                                                                                                                            aTGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTAGCAACGTTCAAATCCGCTCCCGGCGGTTTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGa                <  1:421037/149‑1 (MQ=255)                                                                                                                                 aaTTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTTGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGc           >  1:139850/1‑149 (MQ=255)                                                                                                                                      cgtgccccAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGt      <  2:220850/145‑1 (MQ=25)                                                                                                                                      cGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAACCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGt      <  2:243464/149‑1 (MQ=255)                                                                                                                                       gATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCATGCTCAGGAGAGCGTTCACCGACAAACACCAGATAAAACGAAAGGCCCAGTc     >  1:459173/1‑149 (MQ=255)                                                                                                                                          ccccAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCttt  <  1:266787/149‑1 (MQ=35)                                                                                                                                          aatcAATTCCTGGCAGTTTAGGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAAGCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCttt  <  1:451059/146‑1 (MQ=16)                                                                                                                                             cAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCaaa                                                                               <  1:235446/69‑1 (MQ=39)                                                                                                                                             cAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCaaa                                                                               >  2:235446/1‑69 (MQ=39)                                                                                                                                              |                                                                                                                                                 CAGGCAGTTCAATCAACTGTTTACCTTGTGGAGCGACATCCAGAGGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCG‑ATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTT  >  CP009273/359964‑360248

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.