Predicted mutation
evidence seq id position mutation freq annotation gene description
JC JC CP009273 3,178,254 IS5 (+) +4 bp 23.6% coding (56‑59/291 nt) yqiC → BMFP family putative fusogenic protein

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 2282398 =NA (NA)8 (0.340) 6/268 NT 27.0% noncoding (1195/1195 nt) IS5 repeat region
?CP009273 3178254 = 21 (0.930)coding (56/291 nt) yqiC BMFP family putative fusogenic protein
* ? CP009273 = 2283592NA (NA)5 (0.210) 5/270 NT 18.8% noncoding (1/1195 nt) IS5 repeat region
?CP009273 = 3178257 21 (0.920)coding (59/291 nt) yqiC BMFP family putative fusogenic protein

ATAGCTTCACATAATTCTGGTTTATGACTTACCCTTATCGCACTACAATGGCACTCAACACCTATCAGTACAGGGAAACTACAATGATTGACCCGAAAAAAATTGAGCAAATCGCTCGCCAGGTTCACGAATCAATGCCTAAAGGAATCAGGGAGTTCGGGGAAGATGTGGAGAAAAAAATCCGCCAAACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGTCCTGTTACGGACTCGTGAAAAACTGGC  >  CP009273/3178116‑3178398
                                                                                                                                             |                                                                                                                                             
aTAGCTTCACATAATTCTGGTTTATGACTTACCCTTATCGCACTACAATGGCACTCAACACCTATCAGTACAGGGAAACTACAATGATTGACCCGAAAAAAATTGAGCAAATCGCTCGCCAGGTTCACGAATCAATGCCGAAAGGAATc                                                                                                                                        >  2:124676/1‑149 (MQ=255)
       ccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAAGGAATCAGGGAGt                                                                                                                                 >  2:373647‑M2/132‑149 (MQ=255)
         caTAATTCTGGTTTATGACTTACCCTTATCGCACTACAATGGCACTCAACACCTATCAGTACAGGGAAACTACAATGATTGACCCGAAAAAAATTGAGCAAATCGCTCGCCAGGTTCACGAATCAATGCCTAAAGGAATCAgg                                                                                                                                     <  1:133077/143‑1 (MQ=255)
          aTAATTCTGGTTTATGACTTACCCTTATCGCACTACAATGGCACTCAACACCTATCAGTACAGGGAAACTACAATGATTGACCCGAAAAAAATTGAGCAAATCGCTCGCCAGATTCACGAATCAATGCCTAAggaaggtgcgaacaagt                                                                                                                              <  2:122421‑M2/149‑18 (MQ=255)
           tAATTCTGGTTTATGACTTACCCTTATCGCACTACAATGGCACTCAACACCTATCAGTACAGGGAAACTACAATGATTGACCCGAAAAAAATTGAGCAAATCGCTCGCCAGGTTCACGAATCAATGCCTAAggaaggtgcgaacaagtc                                                                                                                             >  2:237954‑M2/1‑131 (MQ=255)
            aatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAAGGAATCAGGGAg                                                                                                                                  >  1:79455‑M2/127‑143 (MQ=255)
              ttCTGGTTTATGACTTACCCTTATCGCACTACAATGGCACTCAACACCTATCAGTACAGGGAAACTACAATGATTGACCCGAAAAAAATTGAGCAAATCGCTCGCCAGGTTCACGAATCAATGCCTAAggaaggtgcgaacaagtccct                                                                                                                          <  2:193735‑M2/149‑22 (MQ=255)
                              aCCCTTATCGCACTACAATGGCACTCAACACCTATCAGTACAGGGAAACTACAATGATTGACCCGAAAAAAATTGAGCAAATCGCTCGCCAGGTTCACGAATCAATGCCTAAAGGAATCAGGGAGTTCGGGGAAGATGTGGAGaaaaaa                                                                                                          <  2:158937/149‑1 (MQ=255)
                                ccTTATCGCACTACAATGGCACTCAACACCTATCAGTACAGGGAAACTACAATGATTGACCCGAAAAAAATTGAGCAAATCGCTCGCCAGGTTCACGAATCAATGCCTAAAGGAATCAGGGAGTTCGGGGAAGATGTGGAGAAAAAAAt                                                                                                        <  2:126145/149‑1 (MQ=255)
                                ccTTATCGCACTACAAAGGCACTCAACACCTATCAGAACAGGGAAACTACAATGATTGACCCGAAAAAAATTGAGCAAATCGCTCGCCAGGTTCACGAATCAATGCCTAAAGGAATCAGGGAGTTCGGGGAAGATGTGGAGaa                                                                                                              <  1:86108/143‑1 (MQ=255)
                                      ctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtgagccgagaagaatttccccgcttgttcgcaccttccCTAAAGGAATCAAGGGGTTCGGGGAAGATGGGGAGAAAACAATCCGCCa                                                                                                  >  2:119231‑M2/101‑149 (MQ=255)
                                      ctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAAGGAATCAGGGAGTTCGGGGAAGATGTGGAGAAAAAAAt                                                                                                        >  1:198382‑M2/101‑143 (MQ=255)
                                      cGCACTACTATGGCACTCAACACCTATCAGTACAGGGAAACTACAATGATTGACCCGAAAAAAATTGAGCAAATCGCTTGCCAGGTTCACGAATCAATGCCTAAAGGAATCAGGGAGTTCGGGGAAGATGTGGAGAAAAAAATCCGCCa                                                                                                  <  2:20499/149‑1 (MQ=255)
                                                gcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAAGGAATCAGGGAGTTCGGGGAAGATGTGGAGAAAAAAATCCGCCAAACCCTACaa                                                                                        <  2:89516‑M2/59‑1 (MQ=255)
                                                        aaCACCTATCAGTACAGGGAAACTACAATGATTGACCCGAAAAAAATTGAGCAAATCGCTCGCCAGGTTCACGAATCAATGCCTAAAGGAATCAGGGAGTTCGGGGAAGATGTGGAGAAAAAAATCCGCCAAACCCTACAAgc                                                                                      >  1:39049/1‑143 (MQ=255)
                                                        aaCACCTATCAGTACAGGGAAACTAACATGACTGACCCGAAAAAAATTGAGCAAATAGCTCGCCAGGTTCACGAATCAATGCCTAAAGGAATCAGGGCGTTCGGGGAAGACGTGGAGAAAAAAATCCGCCAAACCCTACAAgc                                                                                      >  1:138760/1‑143 (MQ=255)
                                                                  agtaaggggAGACTACAAGCATTGACCCGAAAAAAATTGAGCAAAACGCTCGCCAGGTTCACGAATCAATGCCTATCGGACTCAGGAAGTTCGGGGAAGATGTGGAGAAAAAAATCCGCCAAACCCTACAAGCGCAGCTGAcg                                                                            <  1:334564/137‑1 (MQ=255)
                                                                   gTACAGGGAAACTACAATGATTGACCCGAAAAAAATTGAGCAAATCGCTCGCCAGGTTCACGAATCAATGCCTAAAGGAATCAGCGAGTTCGGGGAAGATGTGGAGAAAAAAATCCGCCAAACCCTACAAGCGCAGCTGACGCGCCTCg                                                                     <  2:132221/149‑1 (MQ=255)
                                                                     aCAGGGAAACTACAATGATTGACCCGAAAAAAATTGAGCAAATCGCTCGCCAGGTTCACGAATCAATGCCTAAAGGAATCAGGGAGTTCGGGGAAGATGTGGAGAAAAAAATCCGCCAAACCCTACAAGCGCAGCTGACGCGCCTCGAc                                                                   <  2:394368/149‑1 (MQ=255)
                                                                         ggAAACTACAATGATTGACCCGAAAAAAATTGAGCAAATCGCTCGCCAGGTTCACGAATCAATGCCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaa                                                               <  2:54230‑M2/149‑81 (MQ=255)
                                                                         ggAAACTACAATGATTGACCCGAAAAAAATTGAGCAAATCGCTCGCCAGGTTCACGAATCAATGCCTAAAGGAATCAGGGAGTTCGGGGAAGATGTGGAGAAAAAAATCCGCCAAACCCTCCAAGCGCAGCGGACGCGCCCCg                                                                     >  1:229629/1‑143 (MQ=255)
                                                                         ggAAACTACAATGATTGACCCGAAAAAAATTGAGCAAATCGCTCGCCAGGTTCACGAATCAATGCCTAAAGGAATCAGGGAGTTCGGGGAAGATGTGGAGAAAAAAATCCGCCAAACCCTACAAGCGCAGCTGACGCGCCTCg                                                                     >  1:149760/1‑143 (MQ=255)
                                                                         ggAAACTACAATGATTGACCCGAAAAAAATTGAGCAAATCGCTCGCCAGGTTCACGAATCAATGCCTAAAGGAATCAGGGAGTTCGGGGAAGATGTGGAGAAAAAAATCCGCCAAAACCTAGAAGCGCAGCTGACGCGCCTCg                                                                     >  1:62430/1‑143 (MQ=255)
                                                                           aaaCTACCATGATTGTACCGAAAAAAATCGAGCAAATCGCTCGCCAGGTTCCCGAATCAATGCCTAAAGGAACCAGGGAGTTCGGGGAAGATGTGGAGAACAAAATCCGCCAAACCCTACAAGCGCCGCTGACGCGCCTCGAc                                                                   <  1:195873/143‑1 (MQ=255)
                                                                              caaCAACGAATTACCCAAAAAAAATTCAGCAAACCGCACGCCAGGTTCACGAATCAATGCCTAAAGGAATCAGGGAGTTCGGGGAAGATGTGGAGAAAAAAATCCGCCAAACCCTACAAGCGCAGCTGACGCGCCTCGACCtt                                                                <  1:168040/141‑1 (MQ=255)
                                                                                       tttaCCCGAAAAAAATTGAGCAAATCGCTCGCCAGGTTCACGAATCAATGCCTAAAGGAATCAGGGAGTTCGGGGAAGATGTGGAGAAAAAAATCCGCCAAACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGccct                                                       <  1:369029/140‑3 (MQ=255)
                                                                                              gAAAAAAATTGAGCAAATCGCTCGCCAGGTTCACGAATCAATGCCTAAAGGAATCAGGGAGTTCGGGGAAGATGTGGAGAAAAAAATCCGCCAAACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGt                                                >  1:200452/1‑143 (MQ=255)
                                                                                              gAAAAAAATTGAGCAAATCGCTCGCCAGGTTCACGAATCAATGCCTAAAGGAATCAGGGAGTTCGGGGAAGATGTGGAGAAAAAAATCCGCCAAACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGt                                                >  1:200391/1‑143 (MQ=255)
                                                                                                 gagtccgccgagaagaatttccccgcttattcgcaccttccCTAAAGGAATCAGGGAGTTCGGGGAAGATGTGGAGAAAAAAATCCGCCAAACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTcc                                       <  2:356025‑M2/108‑1 (MQ=255)
                                                                                                 aaaaaTTGAGCAAATCGCTCGCCAGGTTCACGAATCAATGCCTAAAGGAATCAGGGAGTTCGGGGAAGGTGTGGAGAAAAAAATCCGCCAAACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGGcc                                       >  2:145893/1‑149 (MQ=255)
                                                                                                 aaaaaTTGAGCAAATCGCTCGCCAGATTGACGAATCAATGCCTAAAGGAATCAGGGAGTTCGGGGAAGATGTGGAGAAAAAAATCCGCCAAACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGGcc                                       >  2:243347/1‑149 (MQ=255)
                                                                                                                   tcgcCAGGTTCACGAATCAATGCCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcag                     <  2:95233‑M2/149‑123 (MQ=255)
                                                                                                                         gcttattcgcaccttccCTAAAGGAATCAGGGAGTTCGGGGAAGATGTGGAGAAAAAAATCCGCCAAACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTTCAAACGCAAGTCCTGTTACGGACTc               <  2:242738‑M2/132‑1 (MQ=255)
                                                                                                                         gcttattcgcaccttccCTAAAGGAATCAGGGAGTTCGGGGAAGATGTGGAGAAAAAAATCCGCCAAACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGTCCTGTTACGGACTc               <  2:433720‑M2/132‑1 (MQ=255)
                                                                                                                                     gtcccctaaggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttc   >  2:384177‑M2/5‑9 (MQ=255)
                                                                                                                                            aaaTGAATCAGCGAGTTCGGGGAAAATGTGGAAAAAAATATCCGCCAAACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGTCCTGTTACGGACTCGTGAAAAACTGgc  <  1:115710/143‑1 (MQ=255)
                                                                                                                                             |                                                                                                                                             
ATAGCTTCACATAATTCTGGTTTATGACTTACCCTTATCGCACTACAATGGCACTCAACACCTATCAGTACAGGGAAACTACAATGATTGACCCGAAAAAAATTGAGCAAATCGCTCGCCAGGTTCACGAATCAATGCCTAAAGGAATCAGGGAGTTCGGGGAAGATGTGGAGAAAAAAATCCGCCAAACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGTCCTGTTACGGACTCGTGAAAAACTGGC  >  CP009273/3178116‑3178398

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.