| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 2096424 | NA (NA) | 49 (2.080) | 42/270 | NT | 80.3% | noncoding (1/1195 nt) | IS5 | repeat region |
| ? | CP009273 | = 2427745 | 12 (0.510) | coding (476/660 nt) | dedA | DedA family inner membrane protein | |||||
ATTATTTCGATGACGCCCGGCAAAATAGAAACCACAATAATCCCGACGATCAGCAGCTTAAGGTTATCCTGAACCATCGGGATTGTACCGAAGAAATAGCCTGCGTAGGTAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATAAGCGGCGAAATGACGGTACGACATGTGGCCCATTCCCGCAACAAACGGGGCGAACGTTCTGACGATCGGCACAAAACGGGCGAGAATAATCGTTTTGCCGCCATGTTTCTCATAAAACTGATGGGTTTTGTCGAGATAACTGCG > CP009273/2427598‑2427890 | attattTCGATGACCCCCGGCAAAATAGAAACCACAATAATCCCGACGATCAGCAGCTTAAGGTTATCCTGAACCATCGGGATTGTACCGAAGAAATAGCCTGCGTAGGTAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATg > 2:19539‑M2/1‑148 (MQ=255) atgtCGATGACGCCCGGCAAAATAGAAACCACAATAATCCCGACGATCAGCAGCTTAAGGTTATCCTGAACCATCGGGATTGTACCGAAGAAATAGCCTGCGTAGGTAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATAAgc < 2:114119/146‑1 (MQ=255) tttCGATGACGCCCGGCAAAATAGAAACCACAATAATCCCGACGATCAGCAGCTTAAGGTTATCCTGAACCATCGGGATTGTACCGAAGAAATAGCCTGCGTAGGTAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATggaag > 2:130395‑M2/1‑144 (MQ=255) cGATGACGCCCGGCAAAATAGAAACCACAATAATCCCGACGATCAGCAGCTTAAGGTTATCCTGAACCATCGGGATTGTACCGAAGAAATAGCCTGCGTAGGTAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATggaaggtg < 2:391198‑M2/149‑9 (MQ=255) ccGGCAAAATAGAAACCACAATAATCCCGACGATCAGCAGCTTAAGGTTATCCTGGACGATCGGGATTGTACCGAAGAAATAGCCTGCGTAGGTAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATggaaggtgcgaacaagt < 2:299429‑M2/149‑18 (MQ=255) gCAAAATAGAAACCACAATAATCCCGACGATCAGCAGCTTAAGGTTATCCTGAACCATCGGGATTGTACCGAAGAAATAGCCTGCGTAGGTAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATAAGCGGCGAAATGACGGTAc < 2:44703/149‑1 (MQ=255) aaTAGAAACCACAATAATCCCGACGATCAGCAGCTTAAGGTTATCCTGAACCATCGGGAGTGTACCGAAGAAATAGCCTGCGTAGGTAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTGATggacggtgcgaaccaaac < 1:190669‑M2/143‑19 (MQ=255) tAGAAACCACAATAATCCCGACGATCAGCAGCTTAAGGTTATCCTGAACCATCGGGATTGTACCGAAGGAATAGCCTGCGTAGGTAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATggaaggtgcgaacaagtccc < 1:258701‑M2/143‑21 (MQ=255) gAACCCACAATAATCCCGACGATCAGCAGCTTAAGGTTATCCTGAACCATCGGGATTGTACCGAAGAAATAGCCTGCGTAGGTAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATAAGCGGCGAAATGACGGTACGa < 1:177890/143‑1 (MQ=255) aagcccaataatCCCGACGATGAGCAGCTTAAGGCTATCCTGCACCAACCGGACTGTACCGAAGAAATAGCCTGTGTAGGTAAAAAGCAGTACCCCCAACAGTGCGCCGATCACGTTATggaaggtgcgaacaagtccctgat > 1:136246‑M2/6‑119 (MQ=255) aCCACAATAATCCCGACGATCAGCAGCTTAAGGTTATCCTGAACCATCGGGATTGTACCGAAGAAATAGCCTGCGTAGGTAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATggaaggtgcgaacaagtccctgatatgagat > 2:49771‑M2/1‑118 (MQ=255) aCCACAAGAAGCCCGACGATCAGCAGCTTAAGGTTATCCTGAACCATCGGGATTGTACCGAAGAAATAGCCTGCGTAGGTAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATggaaggtgcgaacaagtccctgatatgagat > 2:44803‑M2/1‑118 (MQ=255) taatCCCGACGATCAGCAGCTTAAGGTTATCCTGAACCATCGGGATTGTACCGAAGAAATAGCCTGCGTAGGTAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATggaaggtgcgaacaagtccctgatatgagatcatgttt > 2:272682‑M2/1‑111 (MQ=255) ccGACGATCAGCAGCTTAAGGTTATCCTGAACCATCGGGATTGTACCGAAGAAATAGCCTGCGTAGGTAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcag < 2:391610‑M2/149‑44 (MQ=255) gtCAGCAGCTTAAGGTTATCCTGAACCATCGGGATTGTACCGAAGAAATAGCCTGCGTAGGTAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATAAGCGGCGAAATGACGGTACGACATGTGGCCCATTCCCGcaac < 1:193456/142‑1 (MQ=255) agcagcTTAAGGTTATCCTGAACCATCGGGATTGTACCGAAGAAATAGCCTGCGTAGGTAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATggaaggtgcgaacaagtccctgatatgaaatcatgtttgtcatctg < 1:219338‑M2/143‑47 (MQ=255) agcTTAAGGTTATCCTGAACCATCGGGATTGTACCGAAGAAATAGCCTGCGTAGGTAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATAAGCGGCGAAATGACGGTACGACATGTGGCCCATTCCCGCAACAAACgg < 1:17045/143‑1 (MQ=255) cTTAAGGTTATCCTGAACCATCGGGATTGTACCGAAGAAATAGCCTGCGTAGGTAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagcc > 1:294893‑M2/1‑92 (MQ=255) ggTTACCCTGAACCATCGGGATTGTACCGAAGAAATAGCCTGCGTAGGTAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacaggg > 2:354319‑M2/1‑87 (MQ=255) gTTATCCTGAACCATCGGGATTGTACCGAAGAAATAGCCTGCGTAGGTAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaa < 1:267953‑M2/143‑58 (MQ=255) tATCCTGAACCATCGGGATTGTACCGAAGAAATAGCCTGCGTAGGTAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttc < 2:330414‑M2/149‑66 (MQ=255) aTCCTGAACCATCGGGATCGTACCGAAGAAATAGCCTGCGTAGGTAAAAAGCAGTACCCCCAACAGTGCGCCGACCACGTTATAAGCGGCGAAATGACGGTACGACATGTGGCCCATTCCCGCAACAAACGGGGCGAACGTTc < 1:73103/143‑1 (MQ=255) gAACCATCGGGATTGTACCGAAGAAATAGCCTGCGTAGGTAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttc > 1:63686‑M2/1‑78 (MQ=255) gAACCATCGGGATTGTACCGAAGAAATAGCCTGCGGAGGTAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttc > 1:251973‑M2/1‑78 (MQ=255) aaCCAGCGGGAGTGGACCGAAGAAAGGGCCTGCGGAGGGAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatga > 2:391239‑M2/1‑77 (MQ=255) aTCGGGATTGTACCGAAGAAATAGCCTGCGTAGGTAAAAAGCAGGACCCACAACAGTGCGCCGATCACGTTATggaaggtgcgaacaagtccctgatatgagatcaggtttgtcatctggagccatagaacagggttcatcat < 1:8800‑M2/143‑71 (MQ=255) aTCGCGATTGTACCGAAGAAATAGCCTGCGTAGGTAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtca > 2:23572‑M2/1‑73 (MQ=255) cttgTACCGGAGAAATACCCTGCGTAGGTAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaact > 2:16366‑M2/2‑67 (MQ=255) tGTACCGAAGAAATAGCCTGCGTAGGTAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATAAGCGGCGAAATGACGGTACGACATGTGGCCCATTCCCGCAACAAACGGGGCGAACGTTCTGACGATCGGCACAAAACGGGCga < 2:413237/149‑1 (MQ=255) cGAAGAAGTAGCCTGCGTAGGTAAAAAGCAGTACCCACAACAGTGCCCCGATCACGTTGTggaaggtgcgaacaaggccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaactt > 1:41858‑M2/1‑60 (MQ=255) cGAAGAAATAGCCTGCGTAGGTAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaactt > 1:50036‑M2/1‑60 (MQ=255) cGAAGAAATAGCCTGCGTAGGTAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATAAGCGGCGAAATGACGGTACGACATGTGGCCCATTCCCGCAACAAACGGGGCGAACGTTCTGACGATCGGCACAAAACGGGCGGGaata > 2:365146/1‑149 (MQ=255) gacgaaATAGCCTGCGTAGGTAGAAAGCACTACCCACAACATTGCGCCGATCACGTTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaactta > 1:197333‑M2/1‑59 (MQ=255) gaagaaATAGCCTGCGTAGGTAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcg < 2:393241‑M2/149‑91 (MQ=255) aagaaATAGCCTGCGTAGGTAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgc < 2:369512‑M2/149‑92 (MQ=255) agaaATAGCCTGCGTAGGTAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggatcatcatgagtcatcaacttaccttcgcc < 2:141854‑M2/149‑93 (MQ=255) aaaTAGCCTGCGTAGGTAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatcgaacggggatcatcatgagacatcaacgtaccgtcgccga < 2:176443‑M2/149‑95 (MQ=255) aTAGCCTGCGTAGGTAAAAAGCCGTACCCACAACAGTGCGCCGATCACGTTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgaca > 2:222900‑M2/1‑53 (MQ=255) aTAGCCTGCGTAGGTAAAAAGCAGTACCCACAACCGTGCGCCGCTCACGTTATggaaggtgcgaacaagtccctcatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgaca > 2:32364‑M2/1‑53 (MQ=255) aGCCTGCGTAGGTAAAAAGCAGTACCCACAACAGGGCGCCGATCACGTTATggcaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaactcaccgtcccc > 1:101028‑M2/1‑51 (MQ=255) cGTAGGTAAAAAGCAGGACCCACAACAGTGCGCCGATCACGTTATggaatgtgcgaacaagtccctgatatgagaccatgtttttcatctgtagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagt > 1:222610‑M2/1‑45 (MQ=255) gTAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaatt < 1:319127‑M2/143‑104 (MQ=255) aacaGCATGACCCACAACAGTGCGCCGATCACGTTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagacatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaa > 2:292794‑M2/1‑37 (MQ=255) aaaaGCATTACCCACAACAGTGCGCCAATCACGTTATggaaggtgcgaacaagtccctgatatgagatcatgttcgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcag > 1:213283‑M2/1‑37 (MQ=255) aacGCAGTACCCACATCAGTGCGCCGATCACGTTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaag > 2:177398‑M2/1‑36 (MQ=255) aacGCAGCACCCACAACAGTGCGCCGATCACGTTATggaaggtgcgaacaagcccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaag > 2:18172‑M2/1‑36 (MQ=255) aaGCAGTACCCACAACAGTGCGCCGATCACGTTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagc > 2:88070‑M2/1‑35 (MQ=255) gCAGTACCCACAACAGTGCGCCGATCACGTTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagt < 1:28196‑M2/143‑111 (MQ=255) gTACCCACAACAGTGCGGCGATCACGTTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgt > 2:33144‑M2/1‑30 (MQ=255) cccACAACAGTGCGCCGATCACGTTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttgccttcgccgccagtgaattcagcagtcagcgc < 1:238866‑M2/143‑117 (MQ=255) ccACAACAGTGCGCCGATCACGTTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcctctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcaga < 2:262539‑M2/149‑124 (MQ=255) cacaACAGTGCGCCGATCACGTTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttgccttcgccgacagtgaattcagcagtaatcgccg < 1:199077‑M2/143‑119 (MQ=255) cacaACAGTGCGCCGATCACGTTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagac > 2:29135‑M2/1‑25 (MQ=255) cacaACAGTGCGCCGATCACGTTATAAGCGGCGAAATGACGGTACGACATGTGGCCCATTCCCGCAACAAACGGGGCGAACGTTCTGACGATCGGCACAAAACGGGCGAGAAAAATCGTTTTGCGGCCATGTTTGCCATaaaa > 1:178319/1‑143 (MQ=255) acaacaGTGCGCCGATCACGTTATAAGCGGCGAAATGACGGTACGACATGTGGCCCATCCCCGCAACAAACGGGGCGAACGTTCTGACGATCGGCACAAAACGGGCGAGAATAATCGTTTTGCCGCCATGTTTCTCATAAAACTGATgg > 2:13046/1‑149 (MQ=255) acaacaGCGCGCCGATCACGTTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgg > 1:236810‑M2/1‑24 (MQ=255) caacaGTGCGCCGATCACGTTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtc > 1:255889‑M2/1‑23 (MQ=255) aacaGTGCGCCGATCACGTTATggaaggtgcgaacaagtcactgatatgagatcatgttggtaatctggagccagagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcattacgcgccgtcggaacca < 2:79894‑M2/149‑128 (MQ=255) acaGTGCGCCGATCACGTTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcag > 1:234402‑M2/1‑21 (MQ=255) tGCGCCGATCACGTTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagacca < 1:269968‑M2/143‑127 (MQ=255) cgcCGATCACGTTATAAGCGGCGAAATGACGGTACGACATGTGGCCCATTCCCGCAACAAACGGGGCGAACGTTCTGACGATCGGCACAAAACGGGCGAGAATAATCGTTTTGCCGCCATGTTTCTCATAAAACTGATGGGTTTTGTCg < 2:328187/149‑1 (MQ=255) gcCGATCACGTTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagaga < 2:395598‑M2/149‑136 (MQ=255) aTCACGTTATAAGCGGCGAAATGACGGTACGACATGTGGCCCATTCCCGCAACAAACGGGGCGAACGTTCTGACGATCGGCACAAAACGGGCGAGAATAATCGTTTTGCCGCCATGTTTCGCATAAAACTGATGGGTTTTGTCgagaga > 2:363902/1‑147 (MQ=255) aTCACGTTAGAAGCGGCGAAATGACGGTACGACATGTGGCCCATTCCCGCAACAAACGGGGCGAACGTTCTGACGATCGGCACAAAACGGGCGAGAATAATCGTTTTGCCGCCATGTTTCTCATATAACTGATGGGTTTTGTCGAGATa < 2:228569/149‑1 (MQ=255) ttATggaaggtgcgaacaagtccctgatatgagatcacgtttgtcatctggagccatagaacacggttcatcatgagtcatcaacttagcttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtc < 2:281210‑M2/149‑146 (MQ=255) tggacggtgggaacaataccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttctt < 1:235591‑M2/143‑143 (MQ=255) | ATTATTTCGATGACGCCCGGCAAAATAGAAACCACAATAATCCCGACGATCAGCAGCTTAAGGTTATCCTGAACCATCGGGATTGTACCGAAGAAATAGCCTGCGTAGGTAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATAAGCGGCGAAATGACGGTACGACATGTGGCCCATTCCCGCAACAAACGGGGCGAACGTTCTGACGATCGGCACAAAACGGGCGAGAATAATCGTTTTGCCGCCATGTTTCTCATAAAACTGATGGGTTTTGTCGAGATAACTGCG > CP009273/2427598‑2427890 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |