New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 1046001	73 (0.970)	87 (1.160)	65/296	0.1	69.6%	intergenic (+15/+418)	insB1/cspH	IS1 transposase B/stress protein, member of the CspA‑family
	?	CP009273	1973115 =	3 (0.040)					intergenic (‑661/‑119)	flhD/uspC	flagellar class II regulon transcriptional activator, with FlhC/universal stress protein

TTGAGCGGTATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/1045856‑1046001 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTTCTCCATTAGGAGTAAAGCTTTAATGTCACCTGAAGTTCACAGAATAAGGAACAGGTTATGAGCTATAGCAATATTCTTGTCGCTG  >  CP009273/1973115‑1973261                                                                                                                                                                                                                                                                                                       TTGAGCGGTATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTA                                                                                                                                                  >  1:456654/1‑149   GAGCGGTATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATC                                                                                                                                                <  1:357573/149‑1    AGCGGTATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCT                                                                                                                                               <  2:118895/149‑1        GTATACCCTGAATCTGAGGCAGCACCTGGCACGGCTGCGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAATCATCGGGCATTATCTGAACATAAAACACTATCCATAAGTTGGAGTCATTACCTTATCTTTAC                                                                                                                                           <  2:794639/149‑1        GTATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTAC                                                                                                                                           <  1:1200322/149‑1         TATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTGGGAGTCATTACCTTATCTTTACT                                                                                                                                          >  2:1089223/1‑149         TATAACCTGAATCTAGGGCAGCACCTGGCACGGCTGGGACTGAAGTCGCGGTCGTTCTCAAAATCGGTGGAGCTGTATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAATTTGGAGTCATTACCTTATCTTTACa                                                                                                                                          >  2:897816/1‑148            AACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAAT                                                                                                                                       <  1:975712/149‑1               CTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTTCCTTATCTTTACTAATAAT                                                                                                                                    >  1:569867/1‑149               CTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAAT                                                                                                                                    >  2:981590/1‑149               CTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAAT                                                                                                                                    >  1:378891/1‑149                TGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGAGAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATACGTTGAAGGCATTACCTTATCTTTACTAATACTC                                                                                                                                   >  2:663588/1‑149                            AGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCCTCGGGCATAATCTGAAAATAAAACACTATCAATAAGTTTCCGTCAATACCGTATCCTTACTAATAATCAGAGTAAGATTT                                                                                                                       >  1:543472/1‑149                               ACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACC                                                                                                                    >  1:1184872/1‑149                               ACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACC                                                                                                                    >  2:1038119/1‑149                                 CTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTCCCTG                                                                                                                  >  2:494403/1‑149                                        GGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACC                                                                                                           >  2:1095165/1‑149                                          CTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGA                                                                                                         >  2:265180/1‑149                                            GGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGGGT                                                                                                       >  1:160955/1‑149                                            GGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGT                                                                                                       <  1:887886/149‑1                                             gaACGGAAGTCGCTGTCGTTCTCAAAATCGGGGGAGCCGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTT                                                                                                      <  1:498466/147‑1                                             GGACGGACGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCCTGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTT                                                                                                      <  2:509829/149‑1                                              GACGGCAGTCCTTGTCGTTCACAAAATCGGTGGAGCCGCATGACAAAGTCAGCGGGGATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCCGCCTAATATTTACCTGTTGGACCGAGTTG                                                                                                     <  1:513876/149‑1                                              GACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTG                                                                                                     <  2:392669/149‑1                                               ACGGAAGTCGCTGTCGTTCTCAACATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATATACCTGTTTGACCGAGTTGG                                                                                                    <  1:414757/149‑1                                               ACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGG                                                                                                    >  2:631567/1‑149                                               ACGGAAGTCGCGGTCCTTCTCAAAATCGGAGGAGCTCCATGACACAGTCATCGGGCCCTATCTCAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGG                                                                                                    <  1:1041600/149‑1                                                        GCTGTCGGTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTC                                                                                           <  2:533056/149‑1                                                          TGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGT                                                                                         <  2:334144/149‑1                                                          TGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGT                                                                                         <  1:486752/149‑1                                                            TCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTT                                                                                       <  2:271867/149‑1                                                            TCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTT                                                                                       <  2:40881/149‑1                                                            TCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTT                                                                                       <  2:663769/149‑1                                                             gGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCACCGGGTATTATCGTATCATTATACACTTTCTATAAGTTCGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTTC                                                                                      <  1:256489/148‑1                                                              GTTCTCAAAAGCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTTCT                                                                                     <  2:410623/149‑1                                                               tgCTCAAAATCGGTGGTGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATCACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTTCTC                                                                                    <  1:819705/147‑1                                                               TTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATGTTTACCTGTTTGAGCGAGTTGGGATTGCGCCGTTTCTC                                                                                    >  1:537080/1‑149                                                               TTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACATGTTTGACCGAGTTGGGATTGCGTCGTTTCTC                                                                                    >  1:617581/1‑149                                                                TCTCAAAATCGGTGGAGCTGCATGACAAAGGCATCGGGCAGTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTTCTCC                                                                                   <  2:456654/149‑1                                                                 CTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGCACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTTCTCCA                                                                                  <  2:434023/149‑1                                                                  TCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTCATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTTCTCCAT                                                                                 <  1:792292/149‑1                                                                   CAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTTCTCCATT                                                                                <  2:130451/149‑1                                                                    AAAACCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATTAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTTCTCCATTA                                                                               <  2:557005/149‑1                                                                       agCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCTTTTCTCCATTAGGA                                                                            <  1:751684/147‑1                                                                       ATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTTCTCCATTAGGA                                                                            <  1:569993/149‑1                                                                          GGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTTCTCCATTAGGAGTA                                                                         <  2:67370/149‑1                                                                           GTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCACTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGCGATTGCGTCGTTTCTCCATTAGGAGTAA                                                                        >  1:47089/1‑149                                                                            tgggaCTGCAGGACAAAGTCATCTGGCATTATCTGAACATAAAACACTATCAAGAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGAATAATATCTACCTGTTTGACCGAGTTGGGATTGCGTCGTTTCTCCATTAGGAGTAAA                                                                       <  1:794411/144‑1                                                                            TGGAGCGGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTTCTCCATTAGGAGTAAA                                                                       <  2:53682/149‑1                                                                               agcccCATGACAAACTCATCGGGCATCATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTTCTCCATTAGGAGTAAAGCT                                                                    <  2:215008/144‑1                                                                                 CTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACCATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTTCTCCATTAGGAGTAAAGCTTT                                                                  <  2:1137359/149‑1                                                                                   GCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTTCTCCATTAGGAGTAAAGCTTTAA                                                                >  2:133075/1‑149                                                                                    CATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTTCTCCATTAGGAGTAAAGCGTTAAT                                                               >  1:365556/1‑149                                                                                    CATGACAAAGTCACCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTCATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTTCTCCATTAGGAGTAAAGCTTTAAT                                                               <  2:130659/149‑1                                                                                     ATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGACATTACCTTATATTTCCTAATAATCAGACTAATATTTACCTGTTTGACCGACGTGGGATTGCGTCGTTTCTCCATTAGGAGTAAAGGTTTAGTG                                                              >  2:169570/1‑149                                                                                      TGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTTCTCCATTAGGAGTAAAGCTTTAATGT                                                             >  2:1051715/1‑149                                                                                      TGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTTCTCCATTAGGAGTAAAGCTTTAATGT                                                             >  2:713441/1‑149                                                                                       GACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTTCTCCATTAGGAGTAAAGCTTTAATGTC                                                            >  1:738056/1‑149                                                                                        ACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATCTTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTTCTCCATTAGGAGTAAAGCTTTAATGTCA                                                           <  2:795289/149‑1                                                                                        ACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGAGATTGCGTCGTTTCTCCATTAGGAGTAAAGCTTTAATGTCA                                                           >  1:329491/1‑149                                                                                          AAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTTCTCCATTAGGAGTAAAGCTTTAATGTCACC                                                         >  2:333703/1‑149                                                                                          AAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCGGTTTGACCGAGTTGGGATTGCGTCGTTTCTCCATTAGGAGTAAAGCTTTAATGTCACC                                                         >  2:359321/1‑149                                                                                             GTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTTCTCCATTAGGAGTAAAGCTTTAATGTCACCTGA                                                      >  1:847746/1‑149                                                                                              TCATCGGGCATTATTTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACGGAGTTTTTATTGCGTCGTTTCTCCATTAGGAGTAAAGCTTTAATGTCACCTGAA                                                     <  2:543472/149‑1                                                                                              TCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTTCTCCATTAGGAGTAAAGCTTTAATGTCACCTGAc                                                     >  1:137039/1‑148                                                                                              TCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTTCTCCATTAGGAGTAAAGCTTTAATGTCACCTGAA                                                     <  2:703285/149‑1                                                                                                 TCGGGCATTATCTGAACATAAAACACTATCAATGATTTGGAGTCATTACCTTATCTTTACTAATAATCGGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTTCTCCTTTGGGGGTAACATTTTGATTGCGCCTGAAGTT                                                  >  1:209666/1‑149                                                                                                 TCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGATTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTTCTCCATTAGGAGTAAAGCTTTAATGTCACCTGAAGTT                                                  <  2:220825/149‑1                                                                                                 TCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTTCTCCATTAGGAGTAAAGCTTTAATGTCACCTGAAGTT                                                  >  2:910368/1‑149                                                                                                   GGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTTCTCCATTAGGCGTAAAGCTTTAATGTCACCTTAAATTCA                                                >  1:762170/1‑149                                                                                                    GGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTTCTCCATTAGGAGTAAAGCTTTAATGTCACCTGAAGTTCAC                                               >  1:1028833/1‑149                                                                                                           TCTGAACATAACACACTATCAATATGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTGGACCGAGTTGGGATTGCGTCGTTTCTCCATTAGGAGTAAAGCTTTAATGTCACCTGAAGTTCACAGAATAA                                        <  2:1178895/149‑1                                                                                                                  ATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTACTCGTCGGGATAAGAATTACCTGTTTGACCGAGTTGGGATTGCGTCGTTTCTCCATTAGGAGTAAAGCTTTAATGTCACCTGAAGTTCACAGAATAAGGAACAG                                 <  2:1142043/149‑1                                                                                                                  ATAAAACACTATCAATAAGTTGGAGCCATCACCTTATCTTTCATTATTATCAGACGAATATGTACCTGTTTGACCGAGTTGGGATTGCGTCGTTTCTCCATTAGGAGTAAAGCTTTAATGTCACCTGAAGTTCACAGAATAAGGAGCAG                                 >  2:1084347/1‑149                                                                                                                   TAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTTCTCCATTAGGAGTAAAGCTTTAATGTCACCTGAAGTTCACAGAATAAGGAACccg                                >  1:908012/1‑146                                                                                                                    AAAACACTATCAATAAGTTGGAGACATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTTCTCCATTAGAAGTAAAGCTTTAATGTCACCTGAAGTTCACAGAATAAGGAACAGGT                               >  2:248213/1‑149                                                                                                                      AACACTATCAATAAGTTGGAGTCATTACCTTATCTTAACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTTCTCCATTAGGAGTAAAGCTTTAATGTCCCCTGAAGTCCACAGAATAAGGAACAGGTca                             >  1:512262/1‑147                                                                                                                       ACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTTCTCCATTAGGAGTAAAGCTTTAATGTCACCTGAAGTTCACAGAATAAGGAACAGGTTAT                            >  2:1003083/1‑149                                                                                                                        CACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTTCTCCATTAGGAGTAAAGCTTTAATGTCACCTGAAGTTCACAGAATAAGGAACAGGTTATG                           <  1:962591/149‑1                                                                                                                         ACTCTCATTTAGTTGGTGTTCTTACCTTATCTTTTCTAATAGTCAGAATCATTTGTACCTGTTTGACCGAGTTGGGTTTGCGTCGTTTCTCCATTAGGAGTAAAGCTTTAATGTCACCTGAAGTTCACTGAATAAGGAACAGGTTATGA                          <  1:561370/149‑1                                                                                                                           TATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTTCTCCATTAGGAGTAAAGCTTTAATGTCACCGAAAAATCACAGAATAAGGACCAGGTTCTGAGC                        >  1:662932/1‑149                                                                                                                                  AAGTGGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTTCTCCATTAGGAGTAAAGCTTTAATGTCACCTGAAGTTCACAGAATAAGGAACAGGTTATGAGCTATAGCA                 <  2:142416/149‑1                                                                                                                                    GTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTTCTCCATTAGGAGTAAAGCTTTAATGTCACCTGAAGTTCACAGAATAAGGAACAGGTTATGAGCTATAGCAAT               <  1:631567/149‑1                                                                                                                                       GGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTTCTCCATTAGGAGTAAAGCTTTAATGTCACCTGAAGTTCACAGAATAAGGAACAGGTTATGAGCTATAGCAATCTT            >  1:1031958/1‑149                                                                                                                                        GAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTTCTCCATTAGGAGTAAAGCTTTAATGTCACCTGAAGTTCACAGAATAAGGAACAGGTTATGAGCTATAGCAATATTC           <  2:968861/149‑1                                                                                                                                                ACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTTCTCCATTAGGAGTAAAGCTTTAATGTCACCTGAAGTTCACAGAATAAGGAACAGGTTATGAGCTATAGCGATATTCTTGTCGCg   >  1:33899/1‑148                                                                                                                                                 CCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTTCTCCATTAGGAGTAAAGCTTTAATGTCACCTGAAGTTCACAGAATAAGGAACAGGTTATGAGCTATAGCAATATTCTTGTCGCTG  >  2:623806/1‑149                                                                                                                                                                                                                                                                                                       TTGAGCGGTATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/1045856‑1046001 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTTCTCCATTAGGAGTAAAGCTTTAATGTCACCTGAAGTTCACAGAATAAGGAACAGGTTATGAGCTATAGCAATATTCTTGTCGCTG  >  CP009273/1973115‑1973261

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.