| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| JC | CP009273 | 3,528,829:1 | (GTTTTCAGCCAG)1→2 | 88.6% | coding (399/1353 nt) | envZ ← | sensory histidine kinase in two‑component regulatory system with OmpR |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 3528810 | 3 (0.150) | 23 (1.090) +CAGCCAGGTTTT |
18/206 | NT | 88.6% | coding (418/1353 nt) | envZ | sensory histidine kinase in two‑component regulatory system with OmpR |
| ? | CP009273 | 3528811 = | 3 (0.130) | coding (417/1353 nt) | envZ | sensory histidine kinase in two‑component regulatory system with OmpR | |||||
CGGTCGGTTCTGGATACGAATAAACAGCCACGCCCCGCCTATCGCCAATAGCATAATCGCCAGCGTATAGCGGAACAGCGGAGAGAAATCGCCCTGATGAATTTCGGTCAGCGGCACGCGTACCCAGATATTGGGCGACAGCCAGGTTTTCAGCCAGACGACAGGCGAACTTTTGTTGACCTCAACGCGCACTTCCGTCGGGCCGCCCAGTTGCTGCGCCATCTGATGGCTTAAGAATTCATAGTGTTGCGCCCAACGCAGACCTGCCTCTTCGGCAGC > CP009273/3528673‑3528951 | gatacgaataaacagccacgccccgcctatcgccaatagcataatcgccagcgtatagcggaacagcggagagaaatcgccctgatgactttcgggaagcggcacgcgaacccaaatattaccccacagccaggttttcagccag > 1:173473‑M2/139‑145 (MQ=255) gaataaacagccacgccccgcctatcgccaatagcataatcgccagcgtatagcggaacagcggagagaaatcgccctgatgaatttcggtcagcggcccgcgtacccagaaattgggcgacagccaggttttcagccaggattt > 2:70358‑M2/134‑145 (MQ=255) acagccacgccacgcctatcgccaatagcataatcgccagcgtatagcggaacagcggagagaaatcgccctgatgaatttcggtcagcggcacgcgtacccagatattgggcgacagccaggttttcagccaggttttcagcca < 1:253289‑M2/18‑1 (MQ=255) agccacgccccgcctatcgccaatagcataatcgccagcgtatagcggaacagcggagagaaatcgccctgatgaatttcggtcagcggcacgcgtacccagatattgggcgacagccaggttttCAGCCAGGTTTTCAGCCAga > 2:146507‑M2/126‑145 (MQ=255) agccacgccccgcctatcgccaatagcataatcgccagcgtatagcggaacagcggagagaaatcgccctgatgaatttcggtcagcggcacgcgtacccagatattgggcgacagccaggttttCAGCCAGGTTTTCAGCCAga > 2:146497‑M2/126‑145 (MQ=255) agccacgccccgcctagcgccattagcataatcgccagcgtatagcggaactgcggagagaaatcgccctggtgaatttcggtcagcggcacgcgtacccagatattgggcgacagccaggttttCAGCCAGGTTTTCAGCCAga < 2:344713‑M2/20‑1 (MQ=255) gcaacgccccgcctatcgccaatagcataatcgccagcgtatagcggaacagcggagagaaatcgccctgatgaatttcggtcagcggcacgcgtacccagatattgggcgacagccaggttttCAGCCAGGTTTTCAGCCAgac < 1:224877‑M2/21‑1 (MQ=255) gAATAAACAGCCACGCCCCGCCTATCGCCAATAGCATAATCGCCAGCGTATAGCGGAACAGCGGAGAGAAATCGCCCTGATGAATTTCGGTCAGCGGCACGCGTACCCAGATATTGGGCGACAGCCAGGCTTTCAGCCAgaatat > 2:70441/1‑141 (MQ=255) ccccgcctatcgccaatagcataatcgccagcgtatagcggaacagcggagagaaatcgccctgatgaatttcggtcagcggcacgcgtacccagatattgggcgacagccaggttttCAGCCAGGTTTTCAGCCAGACGACAgg < 1:379621‑M2/27‑1 (MQ=255) tcgccaatagcataatcgccagcgtatagcggaacagcggagagaaatcgccctgatgaatatcggtcagcggaacgcgtacccagctattgggcgacagccaggggttCAGCCAGGGCTTCAGCCAGACGACAGGCGAACtttt > 1:63575‑M2/110‑145 (MQ=255) ccgaTCGCCAATAGCATAATCGCCAGCGTATAGCGGAACAGCGGAGAGAAATCGCCCTGATGAATTTCGGTCAGCGGCACGCGTACCCAGATATTGGGCGACAGCCAGGTTTTCATCCAGACGACAGGCGAACTTTTGTTGACCt < 2:73011/142‑1 (MQ=255) taatcgccagcgtatagcggaacagcggagagaaatcgccctgatgaatttcggtcagcggcacgcgtacccagatattgggcgccagccagggtttCAGCCAGGTGTTCAGCCAGACGACAGGCGAACTTTTGTTGACCTCAAc > 2:226911‑M2/98‑145 (MQ=255) cgccagcgtatagcggaacatcggagagaaatcgtcctgatgaatttcggtcagcggcacgcgtacccagatattgggcgacagccaggttttCAGCCAGGTTTTCAGCCAGACGACAGGCGAACTTTTGTTGACCTCAACgcgc < 2:393606‑M2/52‑1 (MQ=255) accagcggagcgaaatcgccctgatgaatttcggtcagcggcacgcgtacccagatattgggcgaacgccaggttttCTGCCAGGTTTTCAGCCAGACGACAGGCGCACTTTTGTTGACCTCAAGCCGCACTTCCGTCGGgccgc > 1:203237‑M2/78‑145 (MQ=255) acagcggagagaaatcgcccggatgaatttcggtcagcggcacgcgtacccagatattgggcgacagccaggttttCAGCCAGGTTTTCAGCCAGACGACAGGCGAACTTTTGTTGACCTCAACGCGCACTTCCGTCGGgccgcc < 1:57913‑M2/69‑1 (MQ=255) agcggagagaaatcgccctgatgaatttcggtcagcggcacgcgtacccagatattgggcgacagccaggttttCAGCCAGGTTTTCAGCCAGACGACAGGCGAACTTTTGTTGACCTCAACGCGCACTTCCGTCGGGCCGCCCa > 1:226295‑M2/75‑145 (MQ=255) agaaatcgccctgatgaatttcggtcagcggcacgcgtacccagatattgggcgacagccagtttttCAGCCAGGTTTTCAGCCAGACGACAGGCGAACTTTTGTTGACCTCAACGCGCACTTCCGTCGGGCCGCCCAGTtgctg < 1:389630‑M2/78‑1 (MQ=255) tgatgaatttcggtcagcggcacgcgtacccagatattgggcgacagccaggttttCAGCCAGGTTTTCAGCCAGACGACAGGCGAACTTTTGTTGACCTCAACGCGCACTTCCGTCGGGCCGCCCAGTTGCTGCGCCATCTGAt > 2:47556‑M2/57‑145 (MQ=255) gtcagcgtcacgcggtcccagaaattgggcgacagccaggttttCAGCCTGTTTTTCAGCCAGACGACAGGCGAACTGTTGTTGACCTCAACGCGCACTTCCGTCGGGCCGCCCAGTTGCTGCGCCATCTGATGGCTTAAGAAtt < 1:96935‑M2/101‑1 (MQ=255) gtcagcggcacgcgtacccagatattgggcgacagccaggttttCAGCCAGGTTTTCAGCCAGACGACAGGCGAACTTTTGTTGACCTCAACGCGCACTTCCGTCGGGCCGCCCAGTTGCTGCGCCATCTGATGGCTTAAGAAtt < 2:371078‑M2/101‑1 (MQ=255) gtcagcggcacgcgtacccagatattgggcgacagccaggttttCAGCCAGGTTTTCAGCCAGACGACAGGCGAACTTTTGTTGACCTCAACGCGCACTTCCGTCGGGCCGCCCAGTTGCTGCGCCATCTGATGGCTTAAGAAtt < 2:354480‑M2/101‑1 (MQ=255) gtaagcggcacgcgtacccagatattgggcgacagccaggttgtCAGCCAGGTTTTCAGCCAGACGACAGGCGAACTTTTGTTGACCCCAACGCGCACTCCCGTCGGGCCGCCCAGTTGCTGCGCCATCTGATGGCTTAAGAAtt < 2:177030‑M2/101‑1 (MQ=255) tcagcggcacgcgtacccagatattgggcgacagccaggttttCAGCCAGGTTTTCAGCCAGACGACAGGCGAACTTTTGTTGACCTCAACGCGCACTTCCGTCGGGCCGCCCAGTTGCTGCGCCATCTGATGGCTTAAGAATTc > 2:224261‑M2/44‑145 (MQ=255) gcggcacgcgtacccagatattgggcgacagccaggttttCAGCCAGGTTTTCAGCCAGACGACAGGCGAACTTTTGTTGACCTCAACGCGCACTTCCGTCGGGCCGCCCAGTTGCTGCGCCATCTGATGGCTTAAGAATTCatg > 1:240717‑M2/41‑144 (MQ=255) ccgggtacccatatcttgggccacagccaggttttCAGCCAGGTTTTCCGCCAGACGACAGGCCAACTTTTGTTGGCCTCGACGCGCACTTCCGTCGGGCCGCCCAGTTGCTGCGCCATCTGATGGCTTAAGAATTCATAGTGtt < 1:68605‑M2/110‑1 (MQ=255) ccagatattgggcgacagccaggttttCAGCCAGGTTTTCAGCCAGACGACAGGCGAACTTTTATTGACCTCAACGCGCACTTCCGTCGGGCCGCCCAGTTGCTGCGCCATCTGATGGCTTAAGAATTCATAGTGTTGCGCCCaa > 2:282485‑M2/28‑145 (MQ=255) ccagatattgggcgacagccaggttctCAGCCAGGTTTTCAGCCAGACGACAGGCGAACTTTTGTTGACCTCAACGCGCACTTCCGTCGGGCCGCCCAGTTGCTGCGCCATCTGATGGCTTAAGAATTCATAGTGTTGCGCCCaa > 2:374081‑M2/28‑145 (MQ=255) cGGCACGCGTACCCAGATATTGGGCGACAGCCAGGTTTGCAGCCAGACGACAGGCGAACTTTTGTTGACCTCAACGCGCACTTCCGTCGGGCCGCCCAGTTGCTGCGCCATCTGATGGCTTAAGAATTCATAGTGTTGCGCCCaa < 2:173473/145‑1 (MQ=255) ggcgacagccaggttttCAGCCAGGTTTTCAGCCAGACGACAGGCGAACTTTTGTTGACCTCAACGCGCACATCCTTCGGGCCGCCCAGTTGCTGCGCCACCTGATGGCTTAAGAATTCATAGTGTTGCGCCCAACGCAGACCTg < 2:63575‑M2/128‑1 (MQ=255) gcctggttttCAGCCATGTTTTCAGCCATACTATAGGCGAACTTTTGTTGACCTCAACGCGCACTTCCGTCGGGCCGCCCAGTTGCTGCGCCACCTGATGGCTTAAGAACTCATAGTGTTGCGCCCAACGCAGACCTGCCTCTTc < 2:380150‑M2/135‑1 (MQ=255) gttctCAGCCAGGTTTTCAGCCAGACGACAGGCGAACTTTTGTTGACCTCAACGCGCACTTCCGTCGGGCCGCCCAGTTGCTGCGCCATCTGATGGCTTAAGAATTCATAGTGTTGCGCCCAACGCAGACCTGCCTCTTCGGCAg < 1:374081‑M2/140‑1 (MQ=255) ttttCAGCCAGGTTTTCAGCCAGACGACAGGCGAACTTTTGTTGACCTCAACGCGCACTTCCGTCGGGCCGCCCAGTTGCTGCGCCATCTGATGGCTTAAGAATTCATAGTGTTGCGCCCAACGCAGACCTGCCTCTTCGGCAGc < 1:47556‑M2/141‑1 (MQ=255) | CGGTCGGTTCTGGATACGAATAAACAGCCACGCCCCGCCTATCGCCAATAGCATAATCGCCAGCGTATAGCGGAACAGCGGAGAGAAATCGCCCTGATGAATTTCGGTCAGCGGCACGCGTACCCAGATATTGGGCGACAGCCAGGTTTTCAGCCAGACGACAGGCGAACTTTTGTTGACCTCAACGCGCACTTCCGTCGGGCCGCCCAGTTGCTGCGCCATCTGATGGCTTAAGAATTCATAGTGTTGCGCCCAACGCAGACCTGCCTCTTCGGCAGC > CP009273/3528673‑3528951 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |