New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 2455548	25 (1.730)	6 (0.420)	6/272	NT	19.5%	coding (764/1341 nt)	fadL	long‑chain fatty acid outer membrane transporter
	?	CP009273	3576788 =	NA (NA)					intergenic (+10/‑55)	yrhA/insA	pseudogene, interrupted by IS1E/IS1 repressor TnpA

CAAGCATTGGCAGCTACCGCCAACGGTATTGACAGTAATACCAAAATCGCTCATCTGAACGGTAACCAGTGGGGCTTTGGCTGGAACGCCGGAATCCTGTATGAACTGGATAAAAATAACCGCTATGCACTGACCTACCGTTCTGAAGTGAAAATTGACTTCAAAGGTAACTACAGCAGCGATCTTAATCGTGCGTTTAATAACTACGGTTTGCCAATTCCTACCGCGACAGGTGGCGCAACGCAATCGGGTTATCTGACGCTGAACCTGCCTGAAATGTGGGAAG  >  CP009273/2455403‑2455688                                                                                                                                                  |                                                                                                                                             cAAGCATTGGCAGCTACCGCCAACGGCATTGACAGTAATACCAAAATCGCTCATCTGAACGGTAACCAGTGGGGCTTTGGCTGGAACGCCGGAATCCTGTATGAACTGGATAAAAATAACCGCTATGCACTGACCTCCCGTCCTGA                                                                                                                                              >  2:141105‑M1/1‑146 (MQ=255)      aTTGGCAGCTTCCGCCAACGGTATTGACAGTAATACCAAAATCGCTCATCTGAACGGTAACCAGTGCGGCCTTGGCTGGAACGCCGGAATCCTGTATCAACTGGATAAAAATAACCGCTATGCACTGACCTACCGTTCTGAAGTGAAAAt                                                                                                                                     <  1:47847/150‑1 (MQ=255)        tGGCAGCTACCGCCAACGGTATTGACAGGTATACCAAAATCGCTCATCTGAACGGTAACCAGTGGGGCTTTGGCTGGAACGCCGGAATCCTGTATGAACTGGATAAAAATAACCGCTATGCACTGACCTACCGTTCTGAggtgatg                                                                                                                                       <  2:54831‑M1/146‑8 (MQ=255)         ggCAGCTACCGCCAACGGTATTGACAGTAATACCAAAATCGCTCATCTGAACGGTAACCAGTGGGGCTTTGGCTGGAACGCCGGAATCCTGTATGAACTGGATAAAAATAACCGCTATGCACTGACCTACCGTTCTGAAGTGAAAATTGa                                                                                                                                  >  1:82591/1‑150 (MQ=255)            aGCTACCGCCAACGGTATTGACAGTAATACCAAAATCGCTCATCTGAACGGTAACCAGTGGGGCTTTGGCTGGAACGCCGGAATCCTGTATGAACTGGATAAAAATAACCGCTATGCACTGACCTACCGTTCTGAAGTGAAAATTGACtt                                                                                                                               <  1:86497/150‑1 (MQ=255)                  cggcAACGGTATTGACAGTAATACCAAAATCGCTCATCTGAACGGTAACCAGTGGGGCTTTGGCTGGAACGCCGGAATCCTGTATGAACTGGATAAAAATAACCGCTATGCACTGACCTACCGTTCTGAAGTGAAAATTGACTTCa                                                                                                                             <  2:185076/143‑1 (MQ=255)                                    tAATACCAAAATCGCTCATCTGAACGGTAACCAGTGGGGCTTTGGCTGGAACGCCGGAATCCTGTATGAACTGGATAAAAATAACCGCTATGCACTGACCTACCGTTCTGAAGTGAAAATTGACTTCAAAGGTAACTACAGCAGCg                                                                                                           <  2:47298/146‑1 (MQ=255)                                        aCCAAAATCGCTCATCTGAACGGTAACCAGTGGGGCTTTGGCTGGAACGCCGGAATACTGTATGAACTGGATAAAAATAACCGCTATGCACTGACCTACCGTTCTGAAGTGAAAATTGACTTCAAAGGTAACTACAGCGGAGATCt                                                                                                       >  2:147834/1‑146 (MQ=255)                                                 gCTCATCTGAACGGTAACCAGTGGGGCTTTGGCTGGAACGCCGGAATCCTGTATGAACTGGATAAAAATAAACGCTATGCACTGACCGACCGTTCTGAggtgatgctgccaacttactgatttagtgtatgatggtgtttttgagg                                                                                              >  2:200731‑M1/1‑98 (MQ=255)                                                         gAACGGTAACCAGTGGGGCTTTGGCTGGAACGCCGGAATCCTGTATGAACTGGATAAAAATAACCGCTATGCACTGACCTACCGTTCTGAAGTGAAAATTGACTTCAAAGGTAACTACAGCAGCGATCTTAATCGTGCGTTtaata                                                                                      >  2:22396/1‑146 (MQ=255)                                                          aaCGGTAACCAGTGGGGCTTTGGCTGGAACGCCGGAATCCTGTATGAACTGGATAAAAATAACCGCTATGCACTGACCTACCGTTCTGAAGTGAAAATTGACTTCAAAGGTAACTACAGCAGCGATCTTAATCGTGCGTTtaataa                                                                                     >  2:5186/1‑146 (MQ=255)                                                                 aCCAGTGGGGCTTTGGCTGGAACGCCGGAATCCTGTATGAACTGGATAAAAATAACCGCTATGCACTGACCTACCGTTCTGAAGTGAAAATTGACTTCAAAGGTAACTACAGCAGCGATCTTAATCGTGCGTTTAATAACTACGGTTTGc                                                                          <  1:263829/150‑1 (MQ=255)                                                                  ccAGTGGGGCTTTGGCTGGAACGCCGGAATCCTGTATGAACTGGATAAAAATAACCGCTATGCACTGACCTACCGTTCTGAggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttc                                                                         <  1:26405‑M1/150‑70 (MQ=255)                                                                  ccAGTGGGGCTTTGGCTGGAACGCCGGAATCCTGTATGAACTGGATAAAAATAACCGCTATGCACTGACCTACCGTTCTGAAGTGAAAATTGACTTCAAAGGTAACTACAGCAGCGATCTTAATCGTGCGGTTAATAACTACGGTTTGcc                                                                         >  1:255635/1‑150 (MQ=255)                                                                      tGGGGCTTTGGCTGGAACGCCGGGATCCTGTATGAACGGGATAAAAATAACCGCTGTGCACTGACCCACCGTTCTGAACTTAAAATTGACTTCAAAGGTAACTACAGCAGCGATCTTAATCGTGCGTTTAATAACTACGGTTTGcc                                                                         <  2:38499/146‑1 (MQ=255)                                                                          ggtttggCTGGCACGCCGGAATCCTGTATGAACTGGATAAAAATAACCGCTATGCACTGACCTACCGTTCTGAggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatc                                                                     <  2:15019‑M1/144‑74 (MQ=255)                                                                                 cTGGAACGCCGGAATCCTGTATGAACTGGATAAAAATAACCGCTATGCACTGACCTACCGTTCTGAggtgatgctgcccacttcctgatttagtgtatgatggtgtttttgcggtgctccagtggcttctgtttctctcagctgcc                                                              >  2:101541‑M1/1‑66 (MQ=255)                                                                                   ggAACGCCGGAATCCTGTATGAACTGGATAAAAATAACCGCTATGCACTGACCTACCGTTCTGAAGTGAAAATTGACTTCAAAGGTAACTACAGCAGCGATCTTAATCGTGCGTTTAATAACTACGGTTTGCCAATTCCTACCGCGACAg                                                        <  1:173518/150‑1 (MQ=255)                                                                                   ggAACGCCGGAATCCTGTATGAACTGGATAAAAATAACCGCTATGCACTGACCTACCGTTCTGAAGTGAAAATTGACTTCAAAGGTAACTACAGCAGCGATCTTAATCGTGCGTGTAATAACTACGATTTGCCCAtcgctccagcg                                                            >  2:35488/1‑136 (MQ=255)                                                                                        gCCGGAATCCTGTATGAACTGGATAAAAATAACCGCTATGCACTGACCTACCGTTCTGAAGTGAAAATTGACTTCAAAGGTAACTACAGCAGCGATCTTAATCGTGCGTTTAATAACTACGGTTTGCCAATTCCTACCGCGACAGGTGgc                                                   <  1:47977/150‑1 (MQ=255)                                                                                         ccGGAATCCTGTATGAACTGGATAAAAATAACCGCTATGCACTGACCTACCGTTCTGAAGTGAAAATTGACTTCAAAGGTAACTACAGCAGCGATCTTAATCGTGCGTTTAATAACTACGGTTTGCCAATTCCTACCGCGACAGGTGgcg                                                  <  1:20243/150‑1 (MQ=255)                                                                                         aaggcaccatgcaTGAACTGGATAAAAATACCCGCCCTGCAATGACACCCCGATCTGAAGTGACAATTGACTTCAAAGGTAACTACAGCAGCGATCTTAATCGTGCGTTTAATAACTACGGTTTGCCAATTCCTACCGCGACAGGTGgcg                                                  <  1:120789/138‑1 (MQ=255)                                                                                             aaTCCTGTATGAACTGGAAAAAAATAACCGCTATGCACTGACCTACCGTTCTGAAGTGAAAATTGACTTCAAAGGTAACTACAGCAGCGATCTTAATCGTGCGTTTAATAACTACGGTTTGCCAATTCCTACCGCGACAGGTGgcg                                                  <  2:75915/146‑1 (MQ=255)                                                                                                      tGAACTGGATAAAAATAACCGCTATGCACTGACCTACCGTTCTGAAGTGAAAATTGACTTCAAAGGTAACTACAGCAGCGATCTTAATCGTGCGTTTAATAACTACGGTTTGCCAGTTCCTACCGCGCCAGGTGGCGCAACGCAATCggg                                     >  1:11772/1‑150 (MQ=255)                                                                                                        aaCTGGATAAAAATAACCGCTATGCACTGACCTACCGTTCTGAAGTGAAAATTGACTTCAAAGGTAACTACAGCAGCGATCTTAATCGTGCGTTTAATACCTTCGGTTTGCCAATTCCTACCGCGACAGGTGGCGCAACGCAATCGGGtt                                   <  1:234577/150‑1 (MQ=255)                                                                                                                aaaaaTAACCGCTATGGACTGACCTACCGTTCTGAAGTGAAAATTGACTTCAAAGGTAACTACAGCAGCGATCTTAATCGTGCGTTTAATAACTACGGTTTGCCAATTCCTACCGCGACAGGTGGCGCAACGCAATCGGGTTATCTGACg                           <  1:6049/150‑1 (MQ=255)                                                                                                                   aaTAACCGCGCGGCACTGACCTACCGTTCTGAAGTGAAAATTGACTTCAGAGGTAACTACAGCAGCGATCTTGATCGTGCGTTTAATAACTACGGTTTGCCAATTCCTACCGCGACAGGTGGCGCAACGCAATCGGGTTATCTGAc                            <  2:8648/146‑1 (MQ=255)                                                                                                                           cgaTGCACTGACCTACCGTTCTGAAGTGAAAGTTGACTTCAAAGGTAACTACAGCAGCGATCTTAATCGTGCGTTTAATAACTACGGTTTGCCAATTCCTACCGCGACAGGTGGCGCAACGCAATCGGGTTATCTGACGCTGAAcc                    <  2:186570/144‑1 (MQ=255)                                                                                                                           cTATGCACTGAAGTAACGTTCAGAAGTAATAATTGACTTCAATGGTATCTACAGCAGCCATCTTAATCGTGCGTTTAATAACTACGGTTTGCCAATTCCTACCGCGACAGGTGGCGCAACGCAATCGGGTTATCTGACGCTGAAcc                    <  2:221883/146‑1 (MQ=255)                                                                                                                                    gACCTACCGTTTTTAAGGGAAAATTGACTTCAAAGGTAACTACAGCAGCGATCTTAATCGTGCGTTTAAAAACTACTGTTTGCCAGTTCCGTCGGCGACAGGTGGCGCAACGCAATCGGGTTATCTGACGCTGAACCTGCCTGaaa           <  2:72449/146‑1 (MQ=255)                                                                                                                                      ccTACCGTTCTGAggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgccgga         >  2:90409‑M1/1‑13 (MQ=255)                                                                                                                                         aCCGTTCTGAAGTGAAAATTGACTTCAAAGGTAACTACAGCAGCGATCTTAATCGTGCGTTTAATAACTACGGTTTGCCAATTCCTACCGCGACAGGTGGCGCAACGCAATCGGGTTATCTGACGCTGAACCTGCCTGAAATGTGGGAAg  <  1:54439/150‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                             CAAGCATTGGCAGCTACCGCCAACGGTATTGACAGTAATACCAAAATCGCTCATCTGAACGGTAACCAGTGGGGCTTTGGCTGGAACGCCGGAATCCTGTATGAACTGGATAAAAATAACCGCTATGCACTGACCTACCGTTCTGAAGTGAAAATTGACTTCAAAGGTAACTACAGCAGCGATCTTAATCGTGCGTTTAATAACTACGGTTTGCCAATTCCTACCGCGACAGGTGGCGCAACGCAATCGGGTTATCTGACGCTGAACCTGCCTGAAATGTGGGAAG  >  CP009273/2455403‑2455688

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.