Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP009273	1,206,952	0	T	C	32.0%	128.8 / 56.8	78	pseudogene (84/165 nt)	icdC	pseudogene, isocitrate dehydrogenase C‑terminal gene fragment; idcC' is a 54 codon 3' gene fragment created during e14 prophage insertion
Reads supporting (aligned to +/- strand):  ref base T (31/22);  new base C (14/11);  total (45/33)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

TTATATGCAAATTAGTAAAATTATGTTGCTATGTCAGATAGTTACGATTTAGTCATCTAACTAATGCTGCGCCATATGGGTTGGACTGAAGCGGCTGACCTGATTGTTAAAGGTATGGAAGGCGCAATCAATGCCAAGACCGTAACTTATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCATCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACACGCCCGTTGTTTTATTTATGTGGAT  >  CP009273/1206806‑1207096                                                                                                                                                   |                                                                                                                                                 ttATATGCAAATTAGTAAAATTATGTTGGTATGGCAGATAGTTACGATTTAGTCATCTAACTAATGCTGCGCCACATGGGTTGGACCGAAGCGGCTGACTTAATTGTTAAAGGTATGGAAGGCGCAATCAACGCGAAAACCGTAACCTa                                                                                                                                                >  2:614537/1‑149 (MQ=17)       gCAAATTAGTAAAATTATGTTGCTATGTCAGATAGTTACGATTTAGTCATCTAACTAATGCTGCGCCATATGGGTTGGACTGAAGCGGCTGACCTGATTGTTAAAGGTATGGAAGGCGCAATCAATGCCAAGACCGTAACTTATGa                                                                                                                                             <  1:179247/146‑1 (MQ=255)       gCAAATTAGTAAAATTATGTTGCTATGTCAGATAGTTACGATTTAGTCATCTAACTAATGCTGCGCCACATGGGTTGGACCGAAGCGGCTGACTTAATTGTTAAAGGTATGGAAGGCGCAATCAACGCGAAAACCGTAACCTATGa                                                                                                                                             >  1:882798/1‑146 (MQ=17)       gCAAATGAGTAAAATTATGTTGCTATGTCAGATAGTTACGATTTAGTCATCTAACTAATGCTGCGCCATATGGGTTGGACTGAAGCGGCTGAGCTGAGTGTTAAACGGATGGAAGGCGCGATCAATGGCAGGACCGCAGCTTCTGa                                                                                                                                             >  1:36401/1‑146 (MQ=255)        cAAATTAGTAAAATTATGTTGCTATGTCAGATAGTTACGATTTAGTCATCTAACTAATGCTGCGCCATATGGGTTGGACTGAAGCGGCTGACCTGATTGTTAAAGGTATGGAAGGCGCAATCAATGCCAAGACCGTAACTTATGACTTc                                                                                                                                         <  2:713513/149‑1 (MQ=255)        cAAATTAGTAAAATTATGTTGCTATGTCAGATAGTTACGATTTAGTCATCTAACTAATGCTGCGCCACATGGGTTGGACCGAAGCGGCTGACTTAATTGTTAAAGGTATGGAAGGCGCAGTCAACGCGCAAACCGTAACCTATGAc                                                                                                                                            >  1:331948/1‑146 (MQ=17)        cAAATTAGTAAAATTATGTTGCTATGTCAGATAGTTACGATTTAGTCATCTAACTAATGCTGCGCCACATGGGTTGGACCGAAGCGGCTGACTTAATTGTTAAAGGTATGGAAGGCGCAATCAAGGCGAAAACCGTAACCTATGACttg                                                                                                                                         >  2:1082390/1‑148 (MQ=17)         aaaTGAGTAAAAGTATGTTGCTATGTCCGATAGTTACGATTTAGTCATCTAACTAATGCTGCGCCACATGGGTTGGACCGAAGCGGCTGACTTAATTGTTAAAGGTATGGAAGGCGCAATCAACGCGAAAACCGTAACCTATGACTTCg                                                                                                                                        <  2:19121/149‑1 (MQ=14)          aaTTAGTAAAATTATGTTGCTATGTCAGATAGTTACGATTTAGTCATCTAACTAATGCTGCGCCATATGGGTTGGACTGAAGCGGCTGACCTGCTTGTTAAAGGTATGGAAGGCGCAATCAATGCCAAGACCGTAACTTATGACtt                                                                                                                                          >  1:354/1‑146 (MQ=255)          aaTTAGTAAAATTATGTTGCTATGTCAGATAGTTACGATTTAGTCATCTAACTAATGCTGCGCCACATGGGTTGGACCGAAGCGGCTGACTTAATTGTTAAAGGTATGGAAGGCGCAATCAACGCGAAAACCGTAACCTATGACTTCGa                                                                                                                                       <  2:672376/149‑1 (MQ=14)              aGTAAAATTATGTTGCTATGTCAGATAGTTACGATTTAGTCATCTAACTAATGCTGCGCCATATGGGTTGGACTGAAGCGGCTGACCTGATTGTTAAAGGTATGGAAGGCGCAATCAATGCCAAGACCGTAACTTATGACTTCGAACGt                                                                                                                                   <  2:915886/149‑1 (MQ=255)               gTAAAATTATGTTGCTATGTCAGATAGTTACGATTTAGTCATCTAACTAATGCTGCGCCACATGGGTTGGACCGAAGCGGCTGACTTACTTGTTAAAGGTATGGAAGGCGCAATCAACGCGAAAACCGTAACCTATGCCTTCGagc                                                                                                                                     >  1:986098/1‑144 (MQ=14)                tAAAATTATGTTGCTATGTCAGATAGTTACGATTTAGTCATCTAACTAATGCTGCGCCATATGGGTTGGACTGAAGCGGCTGACCTGATTGTTAAAGGTATGGAAGGCGCAATCAATGCCAAGACCGTAACTTATGACTTCGAACg                                                                                                                                    >  1:1009139/1‑146 (MQ=255)                 aaaaTTATGTTGCTATGTCAGATAGTTACGATTTAGTCATCTAACTAATGCTGCGCCATATGGGTTGGACTGAAGCGGCTGACCTGATTGTTAAAGGTATGGAAGGCGCAATCAATGCCAAGACCGTAACTTATGACTTCGAACGt                                                                                                                                   <  1:57483/146‑1 (MQ=255)                 aaaaTTATGTTGCTATGTCAGATAGTTACGATTTAGTCATCTAACTAATGCTGCGCCACATGGGTTGGACCGAAGCGGCTGACTTAATTGTTAAAGGTATGGAAGGCGCAATCAACGCGAAAACCGTAACCTATGACTTCGAGCGt                                                                                                                                   <  1:964512/146‑1 (MQ=14)                  aaaTTATATTGCTATAGCATATAGGTACGATTGAAGGATCTAACTAATGCTGCGCCACATGGGTTGGACCGAAGCGGCTGACTTAATTGTTAAAGGTATGGAAGGCGCAATCAACGCGAAAACCGTAACCTATGACTTCGAGCGTc                                                                                                                                  >  1:879673/1‑146 (MQ=14)                   aaTTATGTTGCTATGTCAGATAGTTACGATTTAGTCATCTAACTAATGCTGCGCCATATGGGTTGGACTGACGCGGCGGACCTGATTGTTAAAGGTATGGAAGGCGCAATCAATGCCAAGACCGTAACTTATGACTTCGAACGTCTGAt                                                                                                                              >  2:444591/1‑149 (MQ=255)                   aaTTATGTTGCTATGTCAGATAGTTACGATTTAGTCATCTAACTAATGCTGCGCCATATGGGTTGGACTGAAGCGGCTGACCTGATTGTTAAAGGTATGGAAGGCGCAATCAATGCCAAGACCGTAACTTATGACTTCGAACGTCTGAt                                                                                                                              >  2:420709/1‑149 (MQ=255)                       aTGTTGCTATGTCAGATAGTTACGATTTAGTCATCTAACTAATGCTGCGCCACATGGGTTGGACCGAAGCGGCTGACTTAATTGTTAAAGGTATGGAAGGCGCAATCAACGCGAAAACCGTAACCTATGACTTCGAGCGTCTGATGGat                                                                                                                          <  2:460857/149‑2 (MQ=11)                        tGTTGCTATGTCAGATAGTTACGATTTAGTCATCTAACTAATGCTGCGCCACATGGGTTGGACCGAAGCGGCTGACTTAATTGTTAAAGGTATGGAAGGCGCAATCAACGCGAAAACCGTAACCTATGACTTCGAGCGTCTGATgg                                                                                                                            >  1:437701/1‑146 (MQ=11)                         gTTGCTATGTCAGATAGTTACGATTTAGTCATCTAACTAATGCTGCGCGACATGGGTTGGACCGAAGCGGCTGAATTAATTGTTAAAGGTATGGAGGGCGCAATCAGCGCGAAAACCGTAACCTATAACTTCGAGCGTCTGGTGGa                                                                                                                           >  1:697555/1‑146 (MQ=14)                            gCTATGTCAGATAGTTACGATTTAGTCATCTAACTAATGCTGCGCCACATGGGTTGGACCGAAGCGGCTGACTTAATTGTTAAAGGTATGGAAGGCGCAATCAACGCGAAAACCGTAACCTATGACTTCGAGCGTCTGATGGGTGgcgc                                                                                                                     >  2:869047/1‑149 (MQ=11)                               aTGTCAGATAGTTACGATTTAGTCATCTAACTAATGCTGCGCCACATGGGTTGGCCCGAAGCGGCTGACTTAATTGTTAAAGGTATGGAAGGCGCAATCAACGCGAAAACCGTAACCTATGACTTCGAGCGTCTGATGGATGGCGCTaa                                                                                                                  <  2:71207/149‑1 (MQ=11)                               aTGTCAGATAGTTACGATTTAGTCATCTAACTAATGCTGCGCCACATGGGTAGGAAAAAGGTGCCTGACTTAATTGTTAAAGGTATGGAAGGCGCAATCAACGCGAAAACCGTAACCTATGACTTCGAGCGTCTGATGGATGGCGCTaa                                                                                                                  <  2:268393/149‑1 (MQ=11)                                tGTCAGATAGTTACGATTTAGTCATCTAACTAATGCTGCGCCACATGGGTTGGACCGAAGCGGCTGACTTAATTGTTAAAGGTATGGAAGGCGCAATCAACGCGAAAACCGTAACCTATGACTTCGAGCGTCTGATGGATGGCGCt                                                                                                                    >  1:1040155/1‑146 (MQ=11)                                   cAGGTAGTTACGATTTAGTCATCTAACTAATGCTGCGCCACATGGGTTGGACCGAAGCGGCTGACTTAATTGTTAAAGGTATGGAAGGCGCAATCAACGCGAAAACCGTAACCTATGACTTCGAGCGTCTGATGGATGGCGCTaaa                                                                                                                 <  1:253118/146‑2 (MQ=11)                                   cAGATAGTTACGATTTAGTCATCTAACTAATGCTGCGCCATATGGGTTGGACTGAAGCGGCTGACCTGATTGTTAAAGGTATGGAAGGCGCAATCAATGCCAAGACCGTAACTTATGACTTCGAACGTCTGATGGAAGGCGCTAAgctg                                                                                                              <  2:603489/149‑1 (MQ=255)                                      aTAGTTACGATTTAGTCATCTAACTAATGCTGCGCCACATGGGTTGGACCGAAGCGGCTGACTTAATTGTTAAAGGTATGGAAGGCGCAATCAACGCGAAAACCGTAACCTATGACTTCGAGCGGCTGATGGAGGCGGCTAAActgctg                                                                                                           >  2:253416/1‑149 (MQ=11)                                       tAGTTACGATTTAGTCATCTAACTAATGCTGCGCCACATGGGTTGGACCGAAGCGGCTGACTTAATTGTTAAAGGTATGGAAGGCGCAATCAACGCGAAAACCGTAACCTATGACTTCGAGCGTCTGATGGATGGCGCTAAACTGCTGa                                                                                                          <  2:222544/149‑1 (MQ=14)                                          ttACGATTTAGTCATCTAACTAATGCTGCGCCATATGGGTTGGACTGAAGCGGCTGACCTGATTGTTAAAGGTATGGAAGGCGCAATCAATGCCAAGACCGTAACTTATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGa                                                                                                          >  1:390793/1‑146 (MQ=255)                                          ttACGATTTAGTCATCTAACTAATGCTGCGCCACATGGGTTGGACCGAAGCGGCTGACTTAATTGTTAAAGGTATGGAAGGCGCAATCAACGCGAAAACCGTAACCTATGACTTCGAGCGTCTGATGGATGGCGCTAAACTGCTGa                                                                                                          >  1:907704/1‑146 (MQ=14)                                           tACGATTTAGTCATCTAACTAATGCTGCGCCACATGGGTTGGACCGAAGCGGCTGACTTAATTGTTAAAGGTATGGAAGGCGCAATCAACGCGAAAACCGTAACCTATGACTTCGAGCGTCTGATGGATGGCGCTAAACTGCTGaa                                                                                                         >  1:143605/1‑146 (MQ=14)                                             ccaTTTAGTCATCTAACTAATGCTGCGCCATATGGGTTGGACTGAAGCGGCTGACCTGATTGTTAAAGGTATGGAAGGCGCAATCAATGCCAAGACCGTAACTTATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGtt                                                                                                    <  2:82524/147‑1 (MQ=255)                                             cGATTTAGTCATCTAACTAATGCTGCGCCATATGGGTTGGACTGAAGCGGCTGACCTGATTGTTAAAGGTATGGAAGGCGCAATCAATGCCAAGACCGTAACTTATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGtt                                                                                                    <  2:372316/149‑1 (MQ=255)                                               aTTTAGTCATCTAACTAATGCTGCGCCATATGGGTTGGACTGAAGCGGCTGACCTGAGTGTTAAAGGTATGGAAGGCGCAATCAATGCCAAGACCGTAACTTATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCa                                                                                                  <  2:421047/149‑1 (MQ=255)                                               aTTTAGTCATCTAACTAATGCTGCGCCACATGGGTTGGACCGAAGCGGCTGACTTAATTGTTAAAGGTATGGAAGGCGCAATCAACGCGAAAACCGTAACCTATGACTTCGAGCGTCTGATGGATGGCGCTAAACTGCTGAAATGTTCa                                                                                                  <  2:357741/149‑1 (MQ=17)                                                tttAGTCATCTAACTAATGCTGCGCCACATGGGTTGGACCGAAGCGGCTGACTTAATTGTTAAAGGTATGGAAGGCGCAATCAACGCGAAAACCGTAACCTATGACTTCGAGCGTCTGATGGATGGCGCTTAACTGCTGAAATGtt                                                                                                    <  1:573897/146‑1 (MQ=14)                                                tttAGTCATCTAACTAATGCTGCGCCACATGGGTTGGACCGAAGCGGCTGACTTAATTGTTAAAGGTATGGAAGGCGCAATCAACGCGAAAACCGTAACCTATGACTTCGAGCGTCTGATGGATGGCGCTAAACTGCTGAAATGtt                                                                                                    >  1:869022/1‑146 (MQ=17)                                                 ttAGTCATCTAACTAATGCTGCGCCATATGGGTTGGACTGAAGCGGCTGACCTGATTGTTAAAGGTATGGAAGGCGCAATCAATACCAAGACCGTAACTTATGACTTCGAAGGTCTGGTGGAAGGCGCTAAGCTGCTGAAATGTTCaga                                                                                                >  2:667561/1‑149 (MQ=255)                                                 ttAGTCATCTAACTAATGCTGCGCCACATGGGTTGGACCGAAGCGGCTGACTTAATTGTTAAAGGTATGGAAGGCGCAATCAACGCGAAAACCGTAACCTATGACTTCGAGCGTCTGATGGATGGCGCTAAACTGCTGAAATGTTCaga                                                                                                <  2:196977/149‑1 (MQ=17)                                                      cATCTAACTAATGCTGCGCCATATGGGTTGGACTGAAGCGGCTGACCTGATTGTTAAAGGTATGGAAGGCGCAATCAATGCCAAGACCGTAACTTATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTg                                                                                           <  2:667111/149‑1 (MQ=255)                                                            actaaTGCTGCGCCATATGGGTTGGACTGAAGCGGCTGACCTGATTGTTAAAGGTATGGAAGGCGCAATCAATGCCAAGACCGTAACTTATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAg                                                                                     >  2:1102964/1‑149 (MQ=255)                                                            actaaTGCTGCGCCATATGGGTTGGACTGAAGCGGCTGACCTGATTGTTAAAGGTATGGAAGGCGCAATCAATGCCAAGACCGTAACTTATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGATTGCTg                                                                                        >  1:215473/1‑146 (MQ=255)                                                            actaaTGCTGCCGCATATGGTTTGGACTGAAGCGGCTGACCTGATTGTTAAAGGTATGGAAGGCGCAATCAATGCCAAGACCGTAACTTATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAg                                                                                     <  2:1005116/149‑1 (MQ=255)                                                               aaTGCTGCGCCATATGGGTTGGACTGAAGCGGCTGACCTGATTGTTAAAGGTATGGAAGGCGCAATCAATGCCAAGACCGTAACTTATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAg                                                                                     <  1:562741/146‑1 (MQ=255)                                                                  gctgcGCCATATGGGTTGGACTGAAGCGGCTGACCTGATTGTTAAAGGTATGGAAGGTGCAATCAATGCCAAGACCGTAACTTATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGatca                                                                               >  2:789657/1‑149 (MQ=255)                                                                      cgcCATCTGGGTTGGACTGAAGCGGCTGACCTGATTGTTAAAGGTATGGAAGGCGCAATCAATGCCAAGACCGTAACTTATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAAAGTTCAGAGTTTGGTGAAGCGatcat                                                                              >  1:496365/1‑146 (MQ=255)                                                                         cATATGGGTTGGACTGAAGCGGCTGACCTGATTGTTAAAGGTATGGAAGGCGCAATCAATGCCAAGACCGTAACTTATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCATCGaaaa                                                                        <  2:253411/149‑1 (MQ=255)                                                                          atatGGGTTGGACTGAAGGGGCTGACCTGATTGTTAAAGGTATGGAAGGCGCAATCAATGCCAAGACCGTAACTTATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCATCGaa                                                                          <  1:194477/146‑1 (MQ=255)                                                                          atatGGGTTGGACTGAAGCGGCTGACCTGATTGTTAAAGGTATGGAAGGCGCAATCAATGCCAAGACCGTAACTTATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCATCGaa                                                                          >  1:934223/1‑146 (MQ=255)                                                                               ggTTGGACTGAAGCGGCTGACCTGATTGTTAAAGGTATGGAAGGCGCAATCAATGCCAAGACCGTAACTTATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCATCGAAAACATGTa                                                                  >  2:704303/1‑149 (MQ=255)                                                                                 ttGGACTGAAGCGGCTGACCTGATTGTTAAAGGCATGGAAGGCGCAATCAATGCCAAGACCGTAACTTATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCATCGAAAACATGTAAt                                                                >  2:736520/1‑149 (MQ=255)                                                                                       tGAAGCGGCTGACCTGATTGTTAAAGGTCTGGAAGGCGCAATCAATGCCAAGACCGTAACTTAGGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGACGTTGGTGAAGCGATCATCGAAAACATGTAATCTCTcc                                                          >  2:748319/1‑149 (MQ=255)                                                                                       tGAAGCGGCTGACCTGATTGTTAAAGGTATGGAAGGCGCAATCAATGCCAAGACCGTAACTTATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCATCGAAAACATGTAAtctc                                                             >  1:895089/1‑146 (MQ=255)                                                                                       tGAAGCGGCTGACCTGATTGTTAAAGGTATGGAAGGCGCAATCAATGCCAAGACCGTAACTTATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCATCGAAAACATGTAAtctc                                                             >  1:164447/1‑146 (MQ=255)                                                                                       tGAAGCGGCTGACCTGATTGTTAAAGGTATGGAAGGCGCAATCAATGCCAAGACCGTAACTTATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCATCGAAAACATGTAATCTCTcc                                                          >  2:632361/1‑149 (MQ=255)                                                                                         aaGCGGCTGACCTGATTGTTAAAGGTATGGAAGGCGCAATCAATGCCAAGACCGTAAATTTTGACTTCGAACGTCTGACGGAAGTCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGGGATCATCGAAAACATGTAATCTCTCCAt                                                        >  2:273140/1‑149 (MQ=18)                                                                                            gggttGACGTGATTGTTAAAGGTAGGGAAGGCGCAATCAATGCCAAGACCGTAACTTATGGCTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGGGTTTGGTGAAGCGATCATCGAAAACGTGTGATCTCTCCAt                                                        <  1:640795/142‑1 (MQ=255)                                                                                            cGGCTGACCTGATTGTTAAAGGTATGGAAGGCGCAATCAATGCCAAGACCGTAACTTATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCATCGAAAACATGTAATCTCTCCAt                                                        <  1:542032/146‑1 (MQ=255)                                                                                            cGGCTGACCTGATTGTTAAAGGTATGGAAGGCGCAATCAATGCCAAGACCGTAACTTATGACTTCGAACGCCTGATGGAAGGCGCTAAGATGCTGAAATGTTCCAGGTTTGGTGAAGCGATCATCGAAAACATGTAATCTCTccgt                                                        >  1:337172/1‑144 (MQ=18)                                                                                                    cTGATTGTTAAAGGTATGGAAGGCGCAATCAATGCCAAGACCGTAACTTATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCATCGAAAACATGTAATCTCTCCATGTGTTaaa                                                >  1:803334/1‑146 (MQ=255)                                                                                                    cTGATCGTTCAAGGTATGGAAGGCGCAACCAATGCCAAGACCGTAACTTATGACCTCGAACGTCTGCAGGAAGGCGCTAAGCTGCTGCAATGTTCAGAGTTTGGTGCAGCGATCATCGAACACATGTAATCTCTCCATGTGTTgaa                                                >  1:77391/1‑146 (MQ=255)                                                                                                      gATTGTTAAAGGTATGGAAGGCGCAATCAATGCCAAGACCGTAACTCATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCATCGAAAACATGTAATCTCTCCATGTGTTAAATATTg                                           <  2:505/149‑1 (MQ=255)                                                                                                       aTTGTTAAAGGTATGGAAGGCGCAATCAATGCCAAGACCGTAACTTATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCATCGAAAACATGTAATCTCTCCATGTGTTAAATATTGa                                          >  2:850441/1‑149 (MQ=255)                                                                                                          gTTAAAGGTATGGAAGGCGCAATCAATGCCAAGACCGTAACTTATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCATTGAAAACATGTAATCTCTCCATGTGTTAAATATTGa                                          <  1:645429/146‑1 (MQ=255)                                                                                                           ttAAAGGTATGGAAGGCGCAATCAATGCCAAGACCGTAACTTATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCATCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACg                                      >  2:530298/1‑149 (MQ=255)                                                                                                            tAAAGGTATGGAAGGTGCAATCAATGCCAAGACCGTAACTTATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCATCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACgg                                     >  2:364134/1‑149 (MQ=255)                                                                                                             aaaGGTATGGAAGGCGCAATCAATGCCAAGACCGTAACTTATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGGTTGGTGAAGCGATCATCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACggg                                    >  2:1107227/1‑149 (MQ=255)                                                                                                               aGGTATGGAAGGCGCAATCAATGCCAAGACCGTAACTTATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCATCGAAAAAATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCg                                  >  2:200338/1‑149 (MQ=255)                                                                                                                 gTATGGGAGGAGCAATACATGCGATGACCGTAACTTATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAACTGTTCAGAGTTTGGTGAAGCGATCATCGAAAACATGTAATCTTTCCCTGTGTTCAATAGTgtgacgcgc                                   <  1:180142/146‑9 (MQ=17)                                                                                                                 gTATGGAAGGCGCAAGCAATGCCAAGACCGTAACTTATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCATCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGta                                <  2:433312/149‑1 (MQ=255)                                                                                                                      gAAGGCGCAATCAATGCCAAGACCGTAACTTATGACTTCGAACGTGTGATTGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCATCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAaca                           >  2:1129481/1‑149 (MQ=255)                                                                                                                      gAAGGCGCAATCAATGCCAAGACCGTAACTTATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCATCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGcata                              >  1:150061/1‑146 (MQ=255)                                                                                                                               atcaatGCCAAGACCGTAACTTATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCATCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACACGCCCgttg                  >  2:619235/1‑149 (MQ=255)                                                                                                                                tcaatGCCAAGACCGTAACTTATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCATCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACACGCCCgttgt                 >  2:673248/1‑149 (MQ=255)                                                                                                                                 caatGCCAAGAACGTAACTTATGGCCTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCATCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACACGCCCgttgtt                <  2:22852/149‑1 (MQ=255)                                                                                                                                            ccGTAACTTATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCATCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACACGCCCGTTGTTttatttat        <  1:700609/146‑1 (MQ=255)                                                                                                                                               tAACTTATGACTTCGAACGTCTGAGGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCATCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACACGCCCGTTGTTTTATTTATGTGGat  <  2:1017328/149‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                 TTATATGCAAATTAGTAAAATTATGTTGCTATGTCAGATAGTTACGATTTAGTCATCTAACTAATGCTGCGCCATATGGGTTGGACTGAAGCGGCTGACCTGATTGTTAAAGGTATGGAAGGCGCAATCAATGCCAAGACCGTAACTTATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCATCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACACGCCCGTTGTTTTATTTATGTGGAT  >  CP009273/1206806‑1207096

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑