New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 = 4117974NA (NA)9 (0.330) 9/256 NT 32.1% noncoding (95/97 nt) RIP305 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site RIP305 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
?CP009273 4121055 = 19 (0.700)coding (1293/2433 nt) metL Bifunctional aspartokinase/homoserine dehydrogenase 2

CTGCGCCTGCGTCAGGGGCTGGCGCTGGTGGCGATGGTCGGTGCAGGCGTCACCCGTAACCCGCTGCATTGCCACCGCTTCTGGCAGCAACTGAAAGGCCAGCCGGTCGAATTTACCTGGCAGTCCGATGACGGCATCAGCCTGGTGGCAGTACTGCGCACCGGCCCGACCGAAAGCCTGATTCAGGGGCTGCATCAGTCCGTCTTCCGCGCAGAAAAACGCATCGGCCTGGTATTGTTCGGTAAGGGCAATATCGGTTCCCGTTGGCTGGAACTGTTCGCCC  >  CP009273/4120915‑4121197
                                                                                                                                            |                                                                                                                                              
cTGCGCCTGCGTCAGGGGCTGGCGCTGGTGGCGATGGTCGGTGCAGGCGTCACCCGTAACCCGCTGCATTGCCACCGCTTCTGGCAGCAACTGAAAGGCCAGCCGGTCGAATTTACCTGGCAGTCCGATGACGGCATCAGCCt                                                                                                                                              <  2:470642/143‑1 (MQ=255)
 tGCGCCTGCGTCAGGGGCTGGCGCTGGTGGCGATGGTCGGTGCAGGCGTCACCCGTAACCCGCTGCATTGCCACCGCTTCTGGCAGCAACTGAAAGGCCAGCCGGTCGAATTTACCTGGCAGTCCGATGACGGCATCAGCCtg                                                                                                                                             >  2:74420/1‑143 (MQ=255)
 ggcgcCTGCGTCAGGGGCTGGCGCTGGTGGCGATGGTCGGTGCAGGCGTCACCCGTAACCCGCTGCATTGCCACCGCTTCTGGCAGCAACTGAAAGGCCAGCCGGTCGAATTTACCTGGCAGTCCGATGACGGCATCAGCCtg                                                                                                                                             <  2:196830/142‑1 (MQ=255)
   cgcCTGCGTCAGGGGCTGGCGCTGGTGGCGATGGTCGGTGCAGGCGTCACCCGTAACCCGCTGCATTGCCACCGCTTCTGGCAGCAACTGAAAGGCCAGCCGGTCGAATTTACCTGGCAGTCCGATGACGGCATCAGCCtggt                                                                                                                                           >  2:286308/1‑143 (MQ=255)
      cTGCGTCAGGGGCTGGCGCTGGTGGCGATGGTCGGTGCAGGCGTCACCCGTAACCCGCTGCATTGCCACCGCTTCTGGCAGCAACTGAAAGGCCAGCCGGTCGAATTTACCTGGCAGTCCGATGACGGCATCGGCCTGGTGGCAGTACt                                                                                                                                  >  1:379910/1‑149 (MQ=255)
                 gCTGGCGCTGGTGGCGATGGTCGGTGCAGGCGTCACCCGTAACCCGCTGCATTGCCACCGCTTCTGGCAGCAACTGAAAGGCCAGCCGGTCGAATTTACCTGGCAGTCCGATGACGGCATCAGCCTGGTGGCAGTACTGCGCGCCGGcc                                                                                                                       >  1:122189/1‑149 (MQ=255)
                  cgggCGCTGGTGGCGATGGTCGGTGCAGGCGTCACCCGTAACCCGCTGCATTGCCACCGCTTCTGGCAGCAACTGAAAGGCCAGCCGGTCGAATTTACCTGGCAGTCCGATGACGGCATCAGCCTGGTGGCAGTACTGCGCAc                                                                                                                            <  2:220192/141‑1 (MQ=255)
                              gCGATGGTCGGTGCAGGCGTCACCCGTAACCCGCTGCATTGCCACCGCTTCTGGCAGCAACTGAAAGGCCAGCCGGTCGAATTTACCTGGCAGTCCGATGACGGCATCAGCCTGGTGGCAGTACTGCGCACCGGCccgaccga                                                                                                                >  2:265141/1‑143 (MQ=255)
                                 ctcgttgtttatgccggatgcggcgtgcacgccttatccggcctacaagttcgtccaaattcactaaattccaatgtgacgtaggcctgataagcgtagcgcatcagCCTGGTGGCAGTACTGCGCACCGGCCCGACCGAAAg                                                                                                             <  2:119636‑M2/36‑1 (MQ=255)
                                    gTCGGTGCAGGCGTCACCCGTAACCCGCTGCATTGCCACCGCTTCTGGCAGCAACTGAAAGGCCAGCCGGTCGAATTTACCTGGCAGTCCGATGACGGCATCAGCCTGGTGGCAGTACTGCGCACCGGCCCGACCGAAAGCCTGATTCa                                                                                                    >  1:214523/1‑149 (MQ=255)
                                              gCGTCACCCGTAACCCGCTGCATTGCCACCGCTTCTGGCAGCAACTGAAAGGCCAGCCGGTCGAATTTACCTGGCAGTCCGATGACGGCATCAGCCTGGTGGCAGTACTGCGCACCGGCCCGACCGAAAGCCTGATTCAGGGGCTGCAt                                                                                          >  1:286114/1‑149 (MQ=255)
                                                 tCACCCGTAACCCGCTGCATTGCCACCGCTTCTGGCAGCAACTGAAAGGCCAGCCGGTCGAATTTACCTGGCAGTCCGATGACGGCATCAGCCTGGTGGCAGTACTGCGCACCGGCCCGACCGAAAGCCTGATTCAGGGGCTGCATCAg                                                                                       >  1:473140/1‑149 (MQ=255)
                                                      ggcgtgaacgccttatccggcctacaagttcgtgcaaattcaataaattgcaatatgacgtaggcctgataagcgtagcgcatcagCCTGGTGGCAGTACTGCGCACCGGCCCGACCGAAAGCCTGATTCAGGGGCTGCATCAGTCCGt                                                                                  <  1:444867‑M2/63‑1 (MQ=255)
                                                             acgccttatccggcctacaagttcgtgcaaattcaataaattgcaatatgacgtaggcctgataagcgtagcgcatcagCCTGGTGGCAGTACTGCGCACCGGCCCGACCGAAAGCCTGATTCAGGGGCTGCATCAGTCCGTCTTCcgc                                                                           <  1:499612‑M2/70‑1 (MQ=255)
                                                                    ttGCCACCGCTTCTGGCAGCAACTGAAAGGCCAGCCGGTCGAATTTACCTGGCAGTCCGATGACGGCATCAGCCTGGTGGCAGTACTGCGCACCGGCCCGACCGAAAGCCTGATTCAGGGGCGGCATCAGTCCGACTTCcgcg                                                                          >  2:304772/1‑143 (MQ=255)
                                                                    atccggcctacaagttcgtgcaaattcaataaattgcaatatgacgtaggcctgataagcgtagcgcagcagCCTGGTGGCAGTACTGCGCACCGGCCCGACCGAAAGCCTGATTCAGGGGCTGCATCAGTCCGTCTTCcgcg                                                                          <  2:308179‑M2/71‑1 (MQ=255)
                                                                            gCTTCTGGCAGCAACTGAAAGGCCAGCCGGTCGAATTTACCTGGCAGTCCGATGACGGCATCAGCCTGGTGGCAGTACTGCGCACCGGCCCGACCGAAAGCCTGATTCAGGGGCTGCATCAGTCCGTCTTCCGCGCAGaaaaa                                                                  <  2:318744/143‑1 (MQ=255)
                                                                                agttcgtgcaaattcaataaattgcaatatgacgtaggcctgataagcgtagcgcatcagCCTGGTGGCAGTACTGCACACCGGCCCGACCGAAAGCCTGATTCAGGGGCTGCATCAGTCCGTCTTCCGCGCAGAAAAACGCa                                                              >  2:358883‑M2/61‑143 (MQ=255)
                                                                                 tGGCAGCAACTGAAAGGCCAGCCGGTCGAATTTACCTGGCAGTCCGATGACGGCATCAGCCTGGTGGCAGTACTGCGCACCGGCCCGACCGAAAGCCTGATTCAGGGGCTGCATCAGTCCGTCTTCCGCGCAGAAAAACGCATCGGCCt                                                       <  1:299792/149‑1 (MQ=255)
                                                                                      tgcaaattcaataaattgcaatatgacgtaggcctgataagcgtagcgcatcagCCTGGTGGCAGTACTGCGCACCGGCCCGACCGAAAGCCTGATTCAGGGGCTGCATCAGTCCGTCTTCCGCGCAGAAAAACGCATCGGCCTGGGAt                                                  >  1:38965‑M2/55‑149 (MQ=255)
                                                                                      gcaACTGAAAGGCCAGCCGGTCGAATTTACCTGGCAGTCCGATGACGGCATCAGCCTGGTGGCAGTACTGCGCACCGGCCCGACCGAAAGCCTGATTCAGGGGCTGCATCAGTCAGTCTTTCGCGAAGAAAAACGCATCGGCCTGGTAt                                                  <  1:291016/149‑1 (MQ=255)
                                                                                       caACTGAAAGCCCAGCCGGTCGAATTTACCTGGCAGTCCGATGACGGCATCAGCCTGGTGGCAGTACTGCGCACCGGCCCGACCGAAAGCCTGATTCAGGGGCTGCATCAGTCCGTCTTCCGCGCAGAAAAACGCATCGGCCTGGTAtt                                                 <  1:442677/149‑1 (MQ=255)
                                                                                           tGAAAGGCCAGCCGGTCGAATTTACCTGGCAGTCCGATGACGGCATCAGCCTGGTGGCAGTACTGCGCACCGGCCCGACCGAAAGCCTGATTCAGGGGCTGCATCAGTCCGTCTTCCGCGCAGAAAAACGCATCGGCCTggga                                                   >  2:19687/1‑141 (MQ=255)
                                                                                                  aaattgcaatatgacgtaggcctgataagcgtagcgcatcagCCTGATGGCAGTACTGCGCACCGGCCCGACCGAAAGCCTGATTCAGGGGCTGCATCAGTCCGTCTTCCGCGCAGAAAAACGCATCGGCCTGGTATTGTTCGGTAAgg                                      <  1:292030‑M2/107‑1 (MQ=255)
                                                                                                   cAGCCGGTCGAATTTACCTGGCAGTCCGATGACGGCATCAGCCTGGTGGCAGTACTGCGCACCGGCCCGACCGAAAGCCTGATTCAGGGGCTGCATCAGTCCGTCTTCCGCGCAGAAAAACGCATCGGCCTGGCATTGTTCgg                                           >  2:419480/1‑143 (MQ=255)
                                                                                                          atatgacgtaggcctgataagcgtagcgcatcagCCTGGTGGCAGTACTGCGCACCGGCCCGACCGAAAGCCTGATTCAGGGGCTGCATCAGTCCGTCTTCCGCGCAGAAAAACGCATCGGCCTGGGATTGTTCGGTAAGGGCAATATc                              >  1:5704‑M2/35‑149 (MQ=255)
                                                                                                                 tACCTGGCAGTCCGATGACGGCATCAGCCTGGTGGCAGTACTGCGCACCGGCCCGACCGAAAGCCTGATTCAGGGGCTGCATCAGTCCGTCTTCCGCGCAGAAAAACGCATCGGCCTGGTATTGTTCGGTAAGGGCAATATCGGTTccc                       <  1:83164/149‑1 (MQ=255)
                                                                                                                 gtaggcctgataagcgtagcgcatcagCCTGGTGGCAGTACTGCGCACCGGCCCGACCGAAAGCCTGATTCAGGGGCTGCATCAGTCCGTCTTCCGCGCAGAAAAACGCATCGGCCTGGTATTGTTCGGTAAGGGCAATATCGGTTccc                       <  1:331222‑M2/122‑1 (MQ=255)
                                                                                                                       gCAGTCCGATGACGGCATCAGCCTGGTGGCAGTACTGCGCACCGGCCCGACCGAAAGCCTGATTCAGGGGCTGCATCAGTCCGTCTTCCGCGCAGAAAAACGCATCGGCCTGGTATTGTTCGGTAAGGGCAATATCGGTTccc                       <  2:74192/143‑1 (MQ=255)
                                                                                                                       gCAGTCCGATGACGGCATCAGCCTGGTGGCAGTACTGCGCACCGGCCCGACCGAAAGCCTGATTCAGGGGCTGCATCAGTCCGTCTTCCGCGCAGAAAAACGCATCGGCCTGGTATTGTCCGGTAAGGGCAATATCGGTTCCCGTTGGc                 <  1:322968/149‑1 (MQ=255)
                                                                                                                             cGATGACGGCATCAGCCTGGTGGCAGTACTGCGCACCGGCCCGACCGAAAGCCTGATTCAGGGGCTGCATCAGTCCGTCTTCCGCGCAGAAAAACGCATCGGCCTGGTATTGTTCGGTAAGGGCAATATCGGTTCCCGTTGGCTGGAAc           >  1:113471/1‑149 (MQ=255)
                                                                                                                                  aggggatgagCCTGGTGGGGGGGCGGGGCACCGGCCCGGCCGGAAGCCTGATTCAGGGGCGGCATCAGTCCGTCTTCCGCGCAGAAAAACGCATCGGCCTGGTATTGTTCGGTAAGGGCAATATCGGTTCCCGTTGGCTGGaa            <  2:104007‑M2/133‑1 (MQ=255)
                                                                                                                                        tcagCCTGGTGGCAGTACTGCGCACCGGCCCGACCGAAAGCCTGATTCAGGGGCTGCATCAGTCCGTCTTACGCGCAGAAAAACGCATCGGCCGGGTATTGTTCGGTAAGGGCAATATCGGTTCCCGTTGGCTGGACTTGTTc      >  2:111745‑M2/5‑143 (MQ=255)
                                                                                                                                            ccTGGTGGCAGTACTGCGCACCGGCCCGACCGAAAGCCTGATTCAGGGGCTGCATCAGTCCGTCTTCCGCGCAGAAAAACGCATCGGCCTGGTATTGTTCGGTAAGGGCAATATCGGTTCCCGTTGGCTGGAACTGTTCGccc  <  2:148876/143‑1 (MQ=255)
                                                                                                                                            |                                                                                                                                              
CTGCGCCTGCGTCAGGGGCTGGCGCTGGTGGCGATGGTCGGTGCAGGCGTCACCCGTAACCCGCTGCATTGCCACCGCTTCTGGCAGCAACTGAAAGGCCAGCCGGTCGAATTTACCTGGCAGTCCGATGACGGCATCAGCCTGGTGGCAGTACTGCGCACCGGCCCGACCGAAAGCCTGATTCAGGGGCTGCATCAGTCCGTCTTCCGCGCAGAAAAACGCATCGGCCTGGTATTGTTCGGTAAGGGCAATATCGGTTCCCGTTGGCTGGAACTGTTCGCCC  >  CP009273/4120915‑4121197

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.