New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	1390301 =	NA (NA)	7 (0.240)	7/270	NT	29.2%	intergenic (‑122/‑32)	ynaI/insH1	mechanosensitive channel protein, very small conductance/IS5 transposase and trans‑activator
	?	CP009273	= 1539172	17 (0.590)					pseudogene (800/951 nt)	yddK	pseudogene, leucine‑rich protein; putative glycoportein

TTATTATGGGGAATAAAGTTCCAATATCGGATGTATTATTAGTATCAATGTGGGTTATTTTATTATTGTCCAGTCTTAAACTTTTGATAGATGGAAGATAAGTCAGGAAATCAAGATTTATATATTTCAACTGGTTGTTAGCAGCGTTTAATGTCTGAACATTGCAGAAGTTGCTATAGAATATTTTAATTTCAGAAAGCAAATTGTTGTTAATAAGTAACGTATTCAAGTTGGGAAATAAGTCATTGTGTAAACTTGTTAGTTTATTATGGGATAGATC  >  CP009273/1539032‑1539311                                                                                                                                             |                                                                                                                                            taattatGGTGAATAAAGTTCCAATATCGGATGTATTATTAGTATCAATGTGGGTTATTTTATTATTGTCCAGTCTTAAACTTTTGATAGATGGAAGATAAGTCAGGAAATCAAGATTTATATATTTCAACTGGTTGTTagca                                                                                                                                           <  2:304001/141‑1 (MQ=255)                      cAATATCGGATGTATTATTAGTATCAATGTGGGTTATTTTATTATTGTCCAGTCTTAAACTTTTGATAGATGGAAGATAAGTCAGGAAATCAAGATTTATATATTTCAACTGGTTGTTAGggaaggtgcgaacaagtccctgatatgag                                                                                                                <  1:524824‑M2/149‑30 (MQ=255)                           tCGGATGTATTATTAGTATCAATGTGGGTTATTTTATTATTGTCCAGTCTTAAACTTTTGATAGATGGAAGATAAGTCAGGAAATCAAGATTTATATATTTCAACTGGTTGTTAGCAGCGTTTAATGTCTGAACATTGCAGAAGTTGCt                                                                                                           >  1:456829/1‑149 (MQ=255)                             ggATGTATTATTAGTATCAATGTGGGTTATTTTATTATTGTCCAGTCTTAAACTTTTGATAGATGGAAGATAAGTCAGGAAATCAAGATTTATATATTTCAACTGGTTGTTAGCAGCGTTTAATGTCTGAACATTGCAGAAGt                                                                                                               <  2:45015/143‑1 (MQ=255)                               aTGTATTATTAGTATCAATGTGGGTTATTTTATTATTGTCCAGTCTTAAACTTTTGATAGGTGGAAGATAAGTCAGGAAATCAAGATTTATATATTTCAACTGGTTGTTAGggaaggtgcgaacaagtccctgatatgagatc                                                                                                             <  2:434319‑M2/143‑33 (MQ=255)                                             tCAATGTGGGTTATTTTATTATTGTCCATTCTTAAACTTTTGATAGATGGAAGATAAGTCAGGAAATCAAGATTTATATATTTCAACTGGTTGTTAGCAGCGTTTAATGTCTGAACATTGCTGAAGTTGCTATAGAATAtttt                                                                                               >  2:413582/1‑143 (MQ=255)                                             tCAATGTGGGTTATTTTATTATTGTCCAGTCTTAAACTTTTGATAGATGGAAGATAAGTCAGGAAATCAAGATTTATATATTTCAACTGGTTGTTAGCAGCGTTTAATGTCTGAACATTGCAGAAGTTGCTATAGAATAtttt                                                                                               >  2:165580/1‑143 (MQ=255)                                                aTGTGGGTTATTTTATTATTGTCCAGTCTTAAACTTTTGATAGATGGAAGATAAGTCAGGAAATCAAGATTTATATATTTCAACTGGTTGTTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatag                                                                                      <  1:474884‑M2/149‑56 (MQ=255)                                                            ttattaTTGTCCAGTCTTAAACTTTTGATAGATGGAAGATAAGTCAGGAAATCAAGATTTATATATTTCAACTGGTTGTTAGCAGCGTTTAATGTCTGAACATTGCAGAAGTTGCTATAGAATATTTTAATTTCAGAAAGCAAAttgtt                                                                          <  1:528402/149‑1 (MQ=255)                                                            ttattaTTGTCCAGGCTTAAACTTTTGATAGATGGAAGATAAGTCAGGAAATCAAGATTTATATATTTCAACTGGTTGTTAGCAGCGTTTAATGTCTGAACATTGCAGAAGTTGCTATAGAATATTTTAATTTCAGAAAGCAAAttgtt                                                                          <  1:462177/149‑1 (MQ=255)                                                                  ttGTCCAGTCTTAAACTTTTGATAGATGGAAGATAAGTCAGGAAATCAAGATTTATCTGTTTGAACGGGTTGTTGGGCATTTTTAATGTCTGGACATTGCGGGCGGTGCGATGGAATAGTTTAATTTCAGCAAGCAAATGGTTGTtaat                                                                    >  1:256343/1‑149 (MQ=255)                                                                    gTCCAGTCTTAAACTTTTGATAGATGGAAGATAAGTCAGGAAATCAAGATTTATATATTTCAACTGGTTGTTAGCAGCGTTTAATGTCTGAACATTGCAGAAGTTGCTATAGAATATTTTAATTTCAGAAAGCAAATTGTTGTtaataa                                                                  <  1:459517/149‑1 (MQ=255)                                                                      ccAGTCTTAAACTTTTGATAGATGGAAGATAAGTCAGGAAATCAAGATTTATATATTTCAACTGGTTGTTAGCAGCGTTTAATGTCTGAACATTGCAGAAGTTGCTATAGAATATTTTAATTTCAGAAAGCAAATTGTTGTTAATAAGt                                                                <  1:330536/149‑1 (MQ=255)                                                                         gTCTTAAACTTTTGATAGATGGAAGATAAGCAAAGCAATCAAGATTTATATATTTCAACTGGGTGTTAGCAGCGTTTAATGTCTGAACATTGCAGAAGTTGCTATAGAATATTTTAATTTCAGAAGGCAAAGTGTCGTtaata                                                                   >  2:102543/1‑143 (MQ=255)                                                                            ttAAACTTTTGATAGATGGAAGATAAGTCAGGAAATCAAGATTTATATATTTCAACTGGTTGTTAGCAGCGTTTAATGTCTGAACATTGCAGAAGTTGCTATAGAATATTTTAATTTCAGAAAGCAAATTGTTGTTAATAAGTAACGTa                                                          >  1:77865/1‑149 (MQ=255)                                                                              aaaCTTTTGATAGATGGAAGATAAGTCAGGAAATCAAGATTTATATATTTCAACTGGTTGTTAGCAGCGTTTAATGTCTGAACATTGCAGAAGTTGCTATAGAATATTTTAATTTCAGAAAGCAAATTGTTGTTAATAAGTAACGTAtt                                                        >  1:165623/1‑149 (MQ=255)                                                                                       aTAGATGGAAGATAAGTCAGGAAATCAAGATTTATATATTTCAACTGGTTGTTAGCAGCGTTTAATGTCTGAACATTGCAGAAGTTGCTATAGAATATTTTAATTTCAGAAAGCAAATTGTTGTTAATAAGTAACGTATTCAAGTTggg                                               <  1:187089/149‑1 (MQ=255)                                                                                        tAGATGGAAGATAAGTCAGGAAATCAAGATTTATATATTTCAAATGGTTGTTAGggaaggtgcgaaaaagtacctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtaatcaacttacgttc                                                    <  2:356681‑M2/143‑90 (MQ=255)                                                                                            tGGAAGATAAGTCAGGAAATCAAGATTTATATATTTCAACTGGTTGTTAGCAGCGTTTAATGTCTGAACATTGCAGAAGTTGCTATAGAATATTTTAATTTCAGAAAGCAAATTGTTGTTAATAAGTAACGTATTCAAGTTgg                                                >  2:431994/1‑143 (MQ=255)                                                                                             ggAAGAAAAGTCAGGAAATCAAGATTTATATATTTCAACTGGTTGTTAGCAGCGTTTAATGTCTGAACATTGCAGAAGTTGCTATAGAATATTTTAATTTCAGAAAGCAAATTGTTGTTAATAAGTAACGTATTCAAGTTGGGAAATaa                                         <  1:177521/149‑1 (MQ=255)                                                                                               aaGATAAGTCAGGAAATCAAGATTTATATATTTCAACTGGTTGTTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgcgacatccacgtaccctcgccgaca                                             <  2:479366‑M2/143‑97 (MQ=255)                                                                                                 gATAAGTCAGGAAATCAAGATTTATATATTTCAAGTGGGTGGTAGgggaggtgcgaacaagtcccggatatgagctcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagt                                           >  2:143575‑M2/1‑45 (MQ=255)                                                                                                          ggAAATCAAGATTTATATATTTCAACTGGTTGTTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaaattagcttcgccgccagttaaatcagn                                  <  2:43589‑M2/143‑108 (MQ=255)                                                                                                                                 aaCTGGTTGTTAGCAGCGTTTAATGTCTGAACATTGCAGAAGTTGCTATAGAATATTTTAATTTCAGAAAGCAAATTGTTGTTAATAAGTAACGTATTCAAGTTGGGAAATAAGTCATTGTGTAAACTTGGTAGTTTATTATg           <  2:411081/143‑1 (MQ=255)                                                                                                                                    tGGTTGTTAGCAGCGTTTAATGTCTGAACATTGCAGAAGTTGCTATAGAATATTTTAATTTCAGAAAGCAAATTGTTGTTAATAAGTAACGTATTCAAGTTGGGAAATAAGTCATTGTGTAAACTTGTTAGTTTATTATGGGATAGATc  <  1:498277/149‑1 (MQ=255)                                                                                                                                             |                                                                                                                                            TTATTATGGGGAATAAAGTTCCAATATCGGATGTATTATTAGTATCAATGTGGGTTATTTTATTATTGTCCAGTCTTAAACTTTTGATAGATGGAAGATAAGTCAGGAAATCAAGATTTATATATTTCAACTGGTTGTTAGCAGCGTTTAATGTCTGAACATTGCAGAAGTTGCTATAGAATATTTTAATTTCAGAAAGCAAATTGTTGTTAATAAGTAACGTATTCAAGTTGGGAAATAAGTCATTGTGTAAACTTGTTAGTTTATTATGGGATAGATC  >  CP009273/1539032‑1539311

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.