New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 3710992	14 (0.490)	8 (0.280)	8/270	NT	36.4%	coding (323/975 nt)	ghrB	glyoxylate/hydroxypyruvate reductase B
	?	CP009273	4487998 =	NA (NA)					intergenic (+241/‑91)	intB/insC1	pseudogene, integrase homology;IS, phage, Tn; Phage‑related functions and prophages; KpLE2 phage‑like element; P4‑like integrase/IS2 repressor TnpA

GGAAAAAATGCCGAAACTGCGTGCCACATCAACGATCTCCGTCGGCTATGACAATTTTGATGTCGATGCGCTTACCGCCCGAAAAATTCTGCTGATGCACACGCCAACCGTATTAACAGAAACCGTCGCCGATACGCTGATGGCGCTGGTGTTGTCTACCGCTCGTCGGGTTGTGGAGGTAGCAGAACGGGTAAAAGCAGGCGAATGGACCGCGAGCATAGGCCCGGACTGGTACGGCACTGACGTTCACCATAAAACACTGGGCATTGTCGGGATGGGAC  >  CP009273/3710852‑3711132                                                                                                                                             |                                                                                                                                             ggAAAAAATGCCGAAACTGCGTGCCACATCAACGATCTCCGTCGGCTATGACAATTTTGATGTCGATGCGCTTACCGCCCGCAAAATTCTGCTGATGCACACGCGAACCGTATTAACAGAAACCGTCGCCGATGCGCTGATgg                                                                                                                                            >  2:367181/1‑143 (MQ=255)  gAAAAAATGCCGAAACTGCGTGCCACATCAACGATCTCCGTCGGCTATGACAATTTTGATGTCGATGCGCTTACCGCCCGAAAAATTCTGCTGATGCACACGCCAACCGTATTAACAGAAACCGTCGCCGATACGCTGATGGCGCTGgt                                                                                                                                     <  1:150962/149‑1 (MQ=255)                    cGTGCCACATCAACGATCTCCGTCGGCTATGACAATTTTGATGTCGATGCGCTTACCGCCCGAAAAATTCTGCTGATGCACACGCCAACCGTATTAACAGAAACCGTCGCCGATACGCTGATtagactggccccctgaatctccagaca                                                                                                                   >  1:514088‑M1/1‑122 (MQ=255)                      tGCCACATCAACGATCTCCGTCGGCTATGACAATTTTGATGCCGATGCGCTTACCGCCCGAAAAAGTCTGCTGATGCACACGCCAACCGTATTAACAGAAACCGTCGCCGATACGCTGATGGCGCTGGTGTTGTCTACCGCtc                                                                                                                       <  2:77949/143‑1 (MQ=255)                          atggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaagtccaCTGATGGCGCTGGTGTTGTCTACCGCtcgtcg                                                                                                                   >  2:75735‑M2/112‑143 (MQ=255)                           caTCAACGATCTCCGTCGGCTATGACAATTTTGATGTCGATGCGCTTACCGCCCGAAAAATTCTGCTGATGCACACGCCAACCGTATTAACAGAAACCGTCGCCGATACGCTGATtagactggccccctgaatctccagacaa                                                                                                                  >  2:465123‑M1/1‑115 (MQ=255)                            aTCAACGATATTCGTCGGCTATGACAATTTTGATGTCGATGCGCTTACCGCCCGAAAAATTCTGCTGATGCACACGCCAACCGTATTAACAGAAACCGTCGCCGATACGCTGATtaaactggccccctgaatctccagacaaa                                                                                                                 >  2:288762‑M1/1‑114 (MQ=255)                                aCGATCTCCGTCGGCTATGACAATTTTGATGTCGAAGCGCTTACCGCCCGAAAAATTCTGCTGATGCACACGCCCACCGTATTCACAGAAACCGTCGCCGACACGCTGATtaaacaggccccctaaatctccagacaaccaat                                                                                                             >  2:440222‑M1/1‑110 (MQ=255)                                 cGATCTCCGTCGGCTATGACAATTTTGATGTCGATGCGCTTACCGCCCGAAAAATTCTGCTGATGCACACGCCAACCGTATTAACAGAAACCGTCGCCGATACGCCGATGGCGCGAGTGTTGTCTACCGCCCGGCGGGtggcg                                                                                                            >  2:307893/1‑139 (MQ=255)                                   gcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaCTGATGGCGCTGGTGTTGTCTACCGCTCGTCGGGTTGTGGa                                                                                                          >  2:409651‑M2/103‑143 (MQ=255)                                   gcatagggcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaCTGATGGCGCTGGTGTTgtctaccgctcgtcgcagttttta                                                                                                          <  2:195931‑M2/41‑10 (MQ=255)                                     ctcCGTCGGCTATGACAATTTTGATGTCGATGCGCTTACCGCCCGAAAAATTCTGCTGATGCACACGCCAACCGTATTAACAGAAACCGTCGCCGATACGCTGATGGCGCTGGTGTTGTCTACCGCTCGTCGGGTTGTGGAgg                                                                                                        <  2:228673/143‑1 (MQ=255)                                     atagtgcgctgggttatcgctcgccacggtaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaCTGATGACGCTGATGTTGTCTACCGCTCGTCGGGCTGTGGAGGTAGCAg                                                                                                  >  1:372865‑M2/101‑149 (MQ=255)                                        cGTCGGCTATGACAATTTTGATGTCGATGCGCTTACCGCCCGAAAAATTCTGCTGATGCACACGCCAACCGTATTAACAGAAACCGTCGCCGATACGCTGATGGCGCTGGTGTTGTCTACCGCTCGTCGGGGTCTGGCGGTAg                                                                                                     >  2:391700/1‑143 (MQ=255)                                           cgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaCTGATGGCGCTGGTGTTGTCTACCGCTCGTCGGGTTGTGGAGGTAGCAGAACggg                                                                                            >  1:291871‑M2/95‑149 (MQ=255)                                           cgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagaggtctggaaatataggggcaaatccaCTGATGGCGCTGGTGTTGTCTACCGCTCGTCGGGTTGTGGAGGTAGCAGAACggg                                                                                            >  1:511152‑M2/95‑149 (MQ=255)                                            ggCTATGACAATTTTGAGGTCGATGCGCTTACCGCCCGAAAAATTCTGCTGATGCACACGCCAACCGTATTAACAGAAACCGTCGCCGATACGCTAATGGCGCTGGTGTTGCCTACCGCTCGTCGCGGTCTGGAGGTGACAGa                                                                                                 >  2:349465/1‑143 (MQ=255)                                                 tGACAATTTTGATGTCGATGCGCTGACCGCCCGAAAAATTCTGCTGATGCACACGCCAACCGTATTAACAGAAACCGTCGCCGATACGCTGATGGCGCTGGTGTTGTCTACCGCTCGTCGGGTTGTGGAGGTAGCAGAACggg                                                                                            <  2:72059/143‑1 (MQ=255)                                                      aTTTTGATGTCGATGCGCTTACCACCCGAAAAATTCTGCTGATGCACACGGCAGCCGTAGTAAGAGAAACCGCCGCTGATACGCGGAGGGCGCTGGTGTTGTCTACCGCTCGTCGGGTTGTGGAGGTAGCAGAACGGGTaaaa                                                                                       <  2:158413/143‑1 (MQ=255)                                                       ttttGATGTCGATGCGCTTACCGCCCGAAAAATTCTGCTGATGCACACGCCAACCGTATTAACAGAAACCGTCGCCGATACGCTGATtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatac                                                                                <  1:522378‑M1/149‑63 (MQ=255)                                                                 gATGCGCTTACCGCCCGAAAAATTCTGCTGATGCACACGCCAACCGTATTAACAGAAACCGTCGCCGATACGCTGATGGCGCTGGTGTTGTCTACCGCTCGTCGGGTTGTGGAGGCAGCAGAACGGGTAAAAGCAGGCGAATGGACcgc                                                                      <  1:340090/149‑1 (MQ=255)                                                                    acgctTACCGCCCGAAAAATTCTGCTGACGCACACGCCAACCGTATTAACAGAAACCGTCGCCGATACGCTGATtagactggccccctgaagctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttt                                                                         <  2:186702‑M1/142‑70 (MQ=255)                                                                              cctgAAAAATTCTGGTGGTGCACAGGCCATCCGTATTAACAGAAACCGTCGCCGATACGGTGGTGGCGCTGGTGTTGTCTACCGCTCGGCGGGGTGTGGAGGTAGCAGAAAGGGGAAGGGCAGGCGAATGGACCGCGAGCATa                                                               <  2:103517/140‑1 (MQ=255)                                                                                 gAAAAATTCTGCTGATGCACACGCCAACCGTATTAACAGAAACCGTCGCCGATACGCTGATtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcatt                                                            <  2:464836‑M1/143‑83 (MQ=255)                                                                                    gcttgtaaagagataagagataacagatggctggaaagataggggcaaatccaCTGATGGCGCTGGTGTTGTCTACCGCTCGTCGGGTTGTGGAGGTAGCAGAACGGGTAAAAGCCGGCGAATGGACCGCGAGCATAGGCCCg                                                         >  2:42848‑M2/54‑143 (MQ=255)                                                                                                    gtgagaacagatgtctggaaatataggggcaaatccaCTGATGGCGCTGGTGTTGTCTACCGCTCGTCGGGTTGTGGAGGTAGCAGAACGGGTAAAAGCAGGCGAATGGACCGCGAGCATAGGCCCGGACTGGTACGGCACTGACGTTc                                   <  1:53807‑M2/112‑1 (MQ=255)                                                                                                            ccGTATTAACAGAAACCGTCGCCGATACGCTGATGGCGCTGGTGTTGTCTACCGCTCGTCGGGTTGTGGAGGTAGCAGAACGGGTAAAAGCAGGCGAATGGACCGCGAGCATAGGCCCGGGCTGGTACGGCACTGACGTTCACCATaaa                           >  1:178976/1‑149 (MQ=255)                                                                                                                     cAGAAACCGTCGCCGATACGCTGATGGCGCTGGTGTTGTCTACCGCTCGTCGGGTTGTGGAGGTAGCAGAACGGGTAAAAGCAGGCGATTGGACCGCGAGCATAGGCCCGGACTGGTACGGCACTGACGTTCACCATAAAAAAATGGGc                  >  1:405490/1‑149 (MQ=255)                                                                                                                     cAGAAACCGTCGCCGATACGCTGATGGCGCTGGTGTTGTCTACCGCTCGTCGGGTTGTGGAGGTAGCAGAACGGGTAAAAGCAGGCGAATGGACCGCGAGCATAGGCCCGGACTGGTACGGCACTGACGTTCACCATAAAACACTGGGc                  >  1:215763/1‑149 (MQ=255)                                                                                                                             gTCGCCGATACGCTGATtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggccggagaaacgcagacggcgtac          <  1:487825‑M1/149‑133 (MQ=255)                                                                                                                                     tccaCTGATGGCGCTGGTGTTGTCTACCGCTCGTCGGGTTGTGGAGGTAGCAGAACGGGTAAAAGCAGGCGAATGGACCGCGAGCATAGGCCCGGACTGGTACGGCACTGACGTTCACCATAAAACACTGGGCATTGTCGGGATGGGAc  <  1:84591‑M2/145‑1 (MQ=255)                                                                                                                                        gCTGATGGCGCTGGTGTTGTCTACCGCTCGTCGGGTTGTGGAGGTAGCAGAACGGGTAAAAGCAGGCGAATGGACCGCGAGCATAGGCCCGGACTGGTACGGCACTGACGTTCACCATAAAACACTGGGCATTGTCGGGATgg     <  2:389902/143‑1 (MQ=255)                                                                                                                                             |                                                                                                                                             GGAAAAAATGCCGAAACTGCGTGCCACATCAACGATCTCCGTCGGCTATGACAATTTTGATGTCGATGCGCTTACCGCCCGAAAAATTCTGCTGATGCACACGCCAACCGTATTAACAGAAACCGTCGCCGATACGCTGATGGCGCTGGTGTTGTCTACCGCTCGTCGGGTTGTGGAGGTAGCAGAACGGGTAAAAGCAGGCGAATGGACCGCGAGCATAGGCCCGGACTGGTACGGCACTGACGTTCACCATAAAACACTGGGCATTGTCGGGATGGGAC  >  CP009273/3710852‑3711132

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.