New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 350323	34 (1.180)	3 (0.110)	3/256	NT	8.3%	noncoding (14/171 nt)	REP26 (repetitive extragenic palindromic) element; contains 4 REP sequences	REP26 (repetitive extragenic palindromic) element; contains 4 REP sequences
	?	CP009273	= 350357	34 (1.250)					noncoding (48/171 nt)	REP26 (repetitive extragenic palindromic) element; contains 4 REP sequences	REP26 (repetitive extragenic palindromic) element; contains 4 REP sequences

AAAACGCGATCCGGAAAAATGCTGCGCCGCACGATCCAGGCGATTTGCGAAGGACGCGATCCTGGAGATCTGACGACCATTGATGATCCTGCGTCGTTGGATCAGATCCGCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGT  >  CP009273/350175‑350466                                                                                                                                                     |                                                                                                                                                aaaaCGCGATCCGGAAAAATGCTGCGCCGCACGATCCAGGCGATTTGCGAAGGACGCGATCCTGGAGATCTGACGACCATTGATGATCCTGCGTCGTTGGATCAGATCCGCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGC                                                                                                                                                 >  1:218245‑M1/1‑149 (MQ=255)      gcgATCCGGAAAAATGCTGCGCCGCACGATCCAGGCGATTTGCGAAGGACGCGATCCTGGAGATCTGACGACCATTGATGATCCTGCGTCGTTGGATCAGATCCGCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGt                                                                                                                                            <  1:119925/149‑1 (MQ=255)      gcgATCCGGAAAAATGCTGCCCCGCACGATCCAGGCGATTTGCGAAGGACGCGATCCTGGAGATCTGACGACCATTGATGATCCTGCGTCGTTGGATCAGATCCGCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGt                                                                                                                                            <  1:367040/149‑1 (MQ=255)        gATCCGGAAAAATGCTGCGCCGCACGATCCAGGCGATTTGCGAAGGACGCGATCCTGGAGATCTGACGACCATTGATGATCCTGCGTCGTTGGATCAGATCCGCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTcgcg                                                                                                                                                >  2:145686/1‑143 (MQ=255)           ccGGAAAAATGCTGCGCCGCACGAGCCAGGCGATTTGCGAAGGACGCGATCCTGGAGATCTGACGACCATTGATGATCCTGCGTCGTTGGATCAGATCCGCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATc                                                                                                                                       <  1:17361/149‑1 (MQ=255)                    tgccgcGCCGCCCGGTCCGGGCGATTTGCGAAGGACGCGATCCTGGAGATCTGACGACCATGGATGATCCTGCGTCGTTGGATCAGATCCGCCAGGCGATGGAAGAGTAGGGTATTGTCGGATGCGTCGCGCGGTGCATCCgg                                                                                                                                    <  2:54293/143‑1 (MQ=255)                         cgccgcACGATCCAGGCGATTTGCGAAGGACGCGATCCTGGAGATCTGACGACCATTGATGATCCTGCGTCGTTGGATCAGATCCGCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGcc                                                                                                                         <  1:124942/149‑1 (MQ=255)                             gcACGATCCAGGCGATTTGCGAAGGACGCGATCCTGGAGATCTGACGACCATTGATGATCCTGCGTCGTTGGATCAGATCCGCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATg                                                                                                                     >  1:194081/1‑149 (MQ=255)                                  aTCCAGGCGATTTGCGAAGGACGCGATCCTGGAGATCTGACGTCGGTTGATTATCCTGCGTCGTTGGATCAGATCCGCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGa                                                                                                                <  1:359355/149‑1 (MQ=255)                                  aTCCAGGCGATTTGCGAAGGACGCGATCCTGGAGATCCGACGACCATTGATGATCCTGCGTCGTTGGATCAGATCCGCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGa                                                                                                                <  1:426972/149‑1 (MQ=255)                                    cccggcgaTTTGCGAAGGACGCGATCCTGGAGATCTTACGACCATTGATGATCCTGCGTCGTTGGATCAGATCCGCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGCgcggtgcattcggcacacagtgccggatg                                                                                                                    <  2:390133‑M1/140‑30 (MQ=255)                                         cGATTTGCGAAGGACGCGATCCTGGAGATCTGACGACCATTGATGATCCTGCGTCGTTGGATCAGATCCGCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGTATCCGGCACTGTGTGCTGATGCCTGATgcgacg                                                                                                         >  1:337008‑M2/1‑143 (MQ=255)                                         cGATTTGCGAAGGACGCGATCCTGGAGATCTGACGACCATTGATGATCCTGCGTCGTTGGATCAGATCCGCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGAt                                                                                                               <  2:192623/143‑1 (MQ=255)                                         cGAGTTGCGAAGGACGCGATCCTGGAGATCTGACGACCATTGATGATCCTGCGTCGTTGGATCAGATCCGCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGTATCCGGCACTGTGTGCTGATGCCTGATgcgacg                                                                                                         >  1:336997‑M2/1‑143 (MQ=255)                                          gATTTGCGAAGGACGCGATCCTGGAGATCTGACGACCATTGATGAGCCTGCGTCGTTGGATCAGATCCGCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATg                                                                                                              >  2:70216‑M2/1‑142 (MQ=255)                                              tGCGAAGGACGCGATCCCGGAGATCTGACGACCATAGACGATAAAACCTCGTTCAGTCAGATCCGCCAGGCGATGGAAGAGTATGGGATTGTCGGATGCGTCGCatcaggcatcggcacacagtgccggatgcaccgcgcgac                                                                                                          <  2:457650‑M1/143‑40 (MQ=255)                                                ggaAGGACGCGATCCTGGAGATCTGACGACCATTGATGATCCGGCGTCGTTGGATCAGATCCGCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGGGTCGCatcaggcatcggcacacagtgccggatgcaccgcgcgacgc                                                                                                        <  2:217652‑M1/142‑42 (MQ=255)                                                   aGGACGCGATCCTGGAGATCTGACGACCATTGATGATCCTGCGTCGTTGGATCAGATCCGCCAGGCGATGGAAGAGCAGGTTGTTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCGGATGCGACGCTGa                                                                                                     >  2:425813/1‑143 (MQ=255)                                                         cgacccgtgagaTTTGCCGACCATTGATGTTCCTGCGTCGTTGGATCAGATCCGCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCa                                                                                         <  1:203264/141‑1 (MQ=255)                                                          gATCCTGGAGATCTGACGACCAATGATGATCCTGCGTCGTTGGGTCAGATCCGCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGttt                                                                                              >  2:226966/1‑143 (MQ=255)                                                                          cgacCATTGATGATCCTGCGTCGTTGGATCAGATCCGCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAAc                                                                        <  1:115983/149‑1 (MQ=255)                                                                            acCATTGATGATCCTGCGTCGTTGGATCAGATCCGCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGCGTCGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCg                                                                      <  1:102639/149‑1 (MQ=255)                                                                            acCATTGATGATCCCGCGTCGTTGGATCAGATCCGCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCg                                                                      <  1:368913/149‑1 (MQ=255)                                                                              cATTGATGATCCTGCGTCGTTGGATCAGATCCGCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCAATGTGTGCCGATGCCTGCTGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGa                                                                          >  2:109035/1‑143 (MQ=255)                                                                                ttGATGATCCTGCGTCGTTGGATCAGATCCGCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGTCGCGTTTTATCATGCCTACGGACCTGGAc                                                                        >  2:124916/1‑143 (MQ=255)                                                                                 tgatgaTCCTGCGTCGTTGGATCAGATCCGCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGt                                                                 >  1:92362/1‑149 (MQ=255)                                                                                   atgctCCTGCGTCGGTGGATCAGATCCGCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCCCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGt                                                                     <  2:147005/143‑1 (MQ=255)                                                                                     gatCCTGCGTCGTTGGATCAGATCCGCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGa                                                             <  1:4759/149‑1 (MQ=255)                                                                                      atCCTGCGTCGTTGGCTCAGATCCGCCAGGCGATGGAAGCGTAGGTTATTGTCGGATGCGTCGCGCGGTGCCTCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTGCGGACCTGAACCGTAgg                                                                  >  2:450445/1‑143 (MQ=255)                                                                                        catGCGGCGTTGGATAAGTTCTGTGAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTc                                                                >  2:217931/3‑143 (MQ=38)                                                                                         cTGCGTCGTTGGATCAGATCCGCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAg                                                         <  1:438481/149‑1 (MQ=255)                                                                                           gcgcCGTTGGCTCAGATCCGCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGgc                                                       <  1:200532/149‑1 (MQ=255)                                                                                                gtggggtCAGATCCGCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTcg                                                  <  1:48744/143‑1 (MQ=255)                                                                                                    gATCAGATCCGCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGTACCGTAGGTCGGATAAGGCGCTCGCGTc                                              <  1:395468/149‑1 (MQ=255)                                                                                                      tCAGATCCGCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCGAAACCGTAGGTCGGATAGGGGGCTCGCGgcgc                                            >  1:308441/1‑149 (MQ=39)                                                                                                           tCCGCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTCGGTCGGATAAGGCGCTCGCGCCg                                             >  2:75118/1‑143 (MQ=255)                                                                                                            ccGCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGa                                      <  1:211429/149‑1 (MQ=255)                                                                                                                        ggAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGGCTGATGCGACGCTGACGCGTTTTATCATGCCTACGAACCTGAACCGTAGGTCGGATAAGGCGGTAGCGGCGCATCCGACCACAGGCTCAg                          >  1:56813/1‑149 (MQ=38)                                                                                                                            gagTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTc                            <  2:476801/143‑1 (MQ=255)                                                                                                                                aGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGGGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGa                  <  1:117593/149‑1 (MQ=255)                                                                                                                                 ggTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGAt                 <  1:317253/149‑1 (MQ=255)                                                                                                                                  gTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATg                <  1:472439/149‑1 (MQ=255)                                                                                                                                  catggtGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGc                      <  2:75473/138‑1 (MQ=255)                                                                                                                                           ggATGCGTCGCGCGGNGCTTCCGGGACTGGGAGCCGATGCTTGAGGCGCCGCTGACGCGTTTGATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGTCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGa       <  1:453003/149‑1 (MQ=255)                                                                                                                                               gCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATgcgacccatccgacaataacctactcttccatcgcctggcggatctgatccaacgacgccggatcatcaatggtcgtcagatctccaggatcgcgtccttcc         <  2:217652‑M2/143‑103 (MQ=255)                                                                                                                                                cGTCGCatcaggcatcagcacacagtgccggatacaccgcgcgacgcatccgacaataacctactcttccatcgcctggcggatctgatccaacgacgcaggatcatcaatggtcgtcagatctccaggatcgcgtccttcgcaactcg  >  1:336997‑M1/1‑6 (MQ=255)                                                                                                                                                cGTCGCatcaggcatcagcacacagtgccggatacaccgcgcgacgcatccgacaataacctactcttccatcgcctggcggatctgatccaacgacgcaggatcatcaatggtcgtcagatctccaggatcgcgtccttcgcaaatcg  >  1:337008‑M1/1‑6 (MQ=255)                                                                                                                                                 gTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATgcgacgcatccgacaatcccatactcttccatcgcctggcggatctgactgaacgaggttttatcgtctatggtcgtcagatctccgggatcgcgtccttcgca       <  2:457650‑M2/143‑105 (MQ=255)                                                                                                                                                  tCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGAc      >  2:442037/1‑143 (MQ=255)                                                                                                                                                     catcaggcatcggcacacagtgccggatgcaccgcgcgacgcatccgacaataacctactcttccatcgcctggcggatctgatccaacgacgcaggctcatcaatggtcgtcagatctccaggatcgcgtccttcgcaaatc   >  2:70216‑M1/1‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                AAAACGCGATCCGGAAAAATGCTGCGCCGCACGATCCAGGCGATTTGCGAAGGACGCGATCCTGGAGATCTGACGACCATTGATGATCCTGCGTCGTTGGATCAGATCCGCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGT  >  CP009273/350175‑350466

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.