Predicted mutation
evidence seq id position mutation annotation gene description
RA CP009273 2,739,137 C→A W47C (TGG→TGT)  rimM ← 16S rRNA processing protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0092732,739,1370CA100.0% 152.9 / NA 50W47C (TGG→TGT) rimM16S rRNA processing protein
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base A (26/24);  total (26/24)

GATGAATCCACGACAATTTCACAATTCGTCAGCAGGTTCGCCGCATCACGATCGTCAACGCCTTTCAGCTTGATGATCATGTCCTGATTGTGGTGCTTCCAGCTTTCCAGCTGGACTTGCTGCCACTGACCCGCCTTCTGGATAAACCAGGGCTGATAGTCAAAAATGCTTTCGGCGTCTTCGGTGGAAGAAAACACTCTGAGCCACCCACGAATACCGTAAGACGAACCCATTTTTCCCAAAACGATGGGATCAACAGGTGCTTGCGCGGTGAGTTGTTTGCTCATCATG  >  CP009273/2738991‑2739281
                                                                                                                                                  |                                                                                                                                                
gATGAATCCACGACAATTTCACAATTCGTCAGCAGGTTCGCCGCATCACGATCGTCAACGCCTTTCAGCTTGATGATCATGTCCTGATTGTGGTGCTTCCAGCTTTCCAGCTGGACTTGCTGCCACTGACCCCCCTCCTGGTTAAAACa                                                                                                                                                >  2:508958/1‑149 (MQ=255)
   gAAGCCACGACAATTTCACGATTCGTCAGCAGGTTCGCCGCATCACGATCGTCAACGCCTTTCAGCTTGATGATCATGTCCTGATTGTGGTGCTTCCAGCTTTCCAGCTGGACTTGCTGCCACTGACCCGCCTTCTGGATAAAACAggg                                                                                                                                             <  1:444097/149‑1 (MQ=255)
                 ttCTCATTTCGTAAGACGGTTCTCCGCATCACGATCGTCAACGCCTTTCAGCTTGATGATCATGTCCTGATTGTGGTGCTTCCAGCTTTCCAGCTGGACTTGCTGCCACTGACCCGCCTTCTGGATAAAACAGGGCTGATAGTCaaaaa                                                                                                                               <  2:463158/149‑1 (MQ=255)
                 ttCACAATTCGTCAGCAGGTTCGCCGCATCACGATCGTCAACGCCTTTCAGCTTGATGATCATGTCCTGATTGTGGTGCTTCCAGCTTTCCAGCTGGACTTGCTGCCACTGACCCGCCTTCTGGATAAAACAGGGCTGATAGTCaaaaa                                                                                                                               >  2:977312/1‑149 (MQ=255)
                   cacaAATCATCACCAGGGCCGCCCCATCACGATCGTCAACGCCTTTCAGCTTGATGATCATGTCCTGATTGTGGTGCTTCCAGCTTTCCAGCTGGACTTGCTGCCACTGACCCGCCTTCTGGATAAAACAGGGCTGATAGTCAAAAATg                                                                                                                             <  2:234713/149‑1 (MQ=255)
                    acaATTCGTCAGCAGGTTCGCCGCATCACGATCGTCAACGCCTTTCAGCTTGATGATCATGTCCTGATTGTGGTGCTTCCAGCTTTCCAGCTGGACTTGCTGCCACTGACCCGCCTTCTGGATAAAACAGGGCTGATAGTCAAAAATGc                                                                                                                            >  2:551134/1‑149 (MQ=255)
                        ttCGTCAGCAGGTTCGCCGCATCACGATCGTCAACGCCTTTCAGCTTGATGATCATGTCCTGATTGTGGTGCTTCCAGCTTTCCAGCTGGACTTGCTGCCACTGACCCGCCTCCTGGCTAAAACAGGGCTGACAGTCTAAAATCCTTTc                                                                                                                        >  1:160623/1‑149 (MQ=255)
                           gccagcagGTTCGCCGCATCACGATCGTCAACGCCTTTCAGCTTGATGATCATGTCCTGATTGTGGTGCTTCCAGCTTGCCAGCTGGACTTGCTGCCACTGACCCGCCTTCTGGATAAAACAGGGCTGATAGTCAAAAATGCTTTCAGc                                                                                                                     <  1:897719/147‑1 (MQ=255)
                                cagGTTCGCCGCATCACGATCGTCAACGCCTTTCAGCTTGATGATCATGTCCTGATTGTGGTGCTTCCAGCTTTCCAGCTGGACTTGCTGCCACTGACCCGCCTTCTGGATAAAACAGGGCTGATAGTCAAAAATGCTTTCGGCGGCtt                                                                                                                >  1:1021774/1‑149 (MQ=255)
                                   gTTCGCCGCATCACGATCGTCAACGCCTTTCAGCTTGATGATCATGTCCTGATTGTGGTGCTTCCAGCTTTCCAGCTGGACTTGCTGCCACTGACCCGCCTTCTGGATAAAACAGGGCTGATAGTCAAAAATGCTTTCGGCGTCTTCgg                                                                                                             <  1:392082/149‑1 (MQ=255)
                                    ttCGCCGCATCACGATCGTCAACGCCTTTCAGCTTGATGATCATGTCCTGATTGTGGTGCTTCCAGCTTTCCAGCTGGACTTGCTGCCACTGACCCGCCTTCTGGATAAAACAGGGCTGATAGTCAAAAATGCTTTCGGCGTCTTCGGt                                                                                                            <  1:916038/149‑1 (MQ=255)
                                    ttCGCCGCATCACGATCGTCAACGCCTTTCAGCTTGATGATCATGTCCTGATTGTGGTGCTTCCAGCTTTCCAGCTGGACTTGCTGCCACTGACCCGCCTTCTGGATAAAACAGGGCTGATAGTCAAAAATGCTTTCGGCGTCTTCGGt                                                                                                            <  1:916033/149‑1 (MQ=255)
                                        ccgcATCACGATCGTCATCGTCTTTCAGTTTGATGATCATGTCCTGATTGTGGTGCTTCCAGCTTTCCAGCTGGACTTGCTGCCACTGACCCGCCTTCTGGATAAAACAGGGCTGATAGTCAAAAATGCTTTCGGCGTCTTCGGTGgaa                                                                                                        <  2:60106/149‑1 (MQ=255)
                                        ccgcATCACGATCGTCAACGCCTTTCAGCTTGATGATCATGTCCTGATTGTGGTGCTTCCAGCTTTCCAGCTGGACTTGCTGCCACTGACCCGCCTTCTGGATAAAACAGGGCTGATAGTAAAAAATACTTTCGACGTCTTCGGGGgaa                                                                                                        >  1:107211/1‑149 (MQ=255)
                                         cgcATCACGATCGTCAACGCCTTTCAGCTTGATGATCATGTCCTGCTTGTGGTGCTTCCAGCTTTCCAGCTGGACTTGCTGACACTGAACCGCCTTCTGGATAAAACAGGGCTGATAGTCAAAAATGCTTTCTGCGTCTTCGGTTgaag                                                                                                       >  1:203806/1‑149 (MQ=255)
                                          gcATCACGATCGTCAACGCCTTTCAGCTTGATGATCATGTCCTGATTGTGGTGCTTCCAGCTTTCCAGCTGGACTTGCTGCCACTGACCCGCCTTCTGGATAAAACAGGGCTGATAGTCAAAAATGCTTTCGGCGTCTTCGGTGgaaga                                                                                                      >  2:765414/1‑149 (MQ=255)
                                               aCGATCGTCAACGCCTTTCAGCTTGATGATCATGTCCTGATTGTGGTGTTTCCTACTTTCCAGCTGGACTTGCTGCCACTGACCCGCCTTCTGGATAAAACAGGGCTGATAGTCAAAAATGCTTTCGGCGTCTTCTGTGGAAGAAAaca                                                                                                 <  2:705601/149‑1 (MQ=255)
                                               aCGATCGTCAACGCCTTTCAGCTTGATGATCATGTCCTGATTGTGGTGCTTCCAGCTTTCCAGCTGGACTTGCTGCCACTGACCCGCCTTCTGGATAAAACAGGGCTGATAGTCAAAAATGCTTTCGGCGTCTTCGGTGGAAGAAAaca                                                                                                 <  2:366434/149‑1 (MQ=255)
                                                 gATCGTCAACGCCTTTCAGCTTGATGATCATGTCCTGATTGTGGTGCTTCCAGCTTTCCAGCTGGACTTGCTGCCACTGACCCGCCTTCTGGATAAAACAGGGCTGATAGTCAAAAATGCTTTCGGCGTCTTCGGTGGAAGAAAACAct                                                                                               >  2:955915/1‑149 (MQ=255)
                                                 gATCGTCAACGCCTTTCAGCTTGATGATCATGACCTGATTGTGGTGCTTCCAGCTTTCCAGCTGGACTTGCTGCCACTGACCCGCCTCCTGGATAAAACAGGGCTGATAGTCAAAAATGCTTTCGGCGTCTTCGATGGAAGGAAACAct                                                                                               >  1:409754/1‑149 (MQ=255)
                                                  aTCGTCAACGCCTTTCAGCTTGATGATCATGTCCTGATTGTGGTGCTTCCAGCTTTCCAGCTGGACTTGCTGCCACTGACCCGCCTTCTGGATAAAACAGGGCTGATAGTCAAAAATGCTTTCGGCGTCTTCGGTGGAAGAAAACActc                                                                                              >  1:608282/1‑149 (MQ=255)
                                                          cGCCTTTCAGCTTGATGATCATGTCCTGATTGTGGTGCTTCCAGCTTTCCAGCTGGACTTGCTGCCACTGACCCGCCTTCTGGATAAAACAGGCCTGATAGTCAAAAATGCTTTCGGCGTCTTCGGTGGAAGAAAACACTCTGAGccac                                                                                      <  1:660044/149‑1 (MQ=255)
                                                            ccTTTCAGCTTGATGATCATGTCCTGATTGTGGTGCTTCCAGCTTTCCAGCTGGACTTGCTGCCACTGACCCGCCTTCTGGATAAAACAGGGCTGATAGTCAAAAATGCTTTCGGCGTCTTCGGTGGAAGAAAACACTCTGAGccaccc                                                                                    >  2:149083/1‑149 (MQ=255)
                                                                        atgatCATGTCCTGATTGTGGTGCTTCCAGCGTTCCAGCTGGACTTGCTGCCACTGACCCGCCTTCTGGATAAAACAGGGCTGATAGTCAAAAATGCTTTCGGCGTCTTCGGTGGAAGAAAACACTCTGAGCCACCCACGAATACCGTa                                                                        >  1:800362/1‑149 (MQ=255)
                                                                          gatCATGTCCTGATTGTGGTGCTTCCAGCTTTCCAGCTGGCCTTGCTGCCACTGACCCGCCTTCTGGATAAAACAGGGCTGATAGTCAAAAATGCTTTCGGCGTCTTCGGTGGAAGAAAACACTCTGAGCCACCCACGAATACCGTAAg                                                                      >  2:655450/1‑149 (MQ=255)
                                                                                        tgtgGTGCTTCCAGCTTTCCAGCTGGACTTGCTGCCACTGACCCGCCTTCTGGATAAAACAGGGCTGATAGTCAAAAATGCTTTCGGCGTCTTCGGTGGAAGAAAACACTCTGAGCCACCCACGAATACCGTAAGACGAACCCAttttt                                                        <  2:304047/149‑1 (MQ=255)
                                                                                        gtgggtgCTTCCAGCTTTCCAGCTGGACTTGCTGCCACTGACCCGCCTGCTGGATAAAACAGGGCTGATAGTCAAAAATGCTTTCGGCGTCTTCGGTGGAAGAAAACACTCTGAGCCACCCACGAATACCGTAAGACGAACCCAttttt                                                        <  1:449534/146‑1 (MQ=255)
                                                                                         gtggtgCTTCCAGCTTTCCAGCTGGACTTGCTGCCACTGACCCGCCTTCTGGATAAAACAGGGCTGATAGTCAAAAATGCTTTCGGCGTCTTCGGTGGAAGAAAACACTCTGAGCCACCCACGAATACCGTAAGACGAACCCATTTTTc                                                       <  2:1012624/149‑1 (MQ=255)
                                                                                          tggtgCTTCCAGCTTTCCAGCTGGACTTGCTGCCACTGACCCGCCTTCTGGATAAAACAGGGCTGATAGTCAAAAATGCTTTCGGCGTCTTCGGTGGAAGAAAACACTCTGAGCCACCCACGACTACCGTAAGACGAACCCATTTTTcc                                                      >  2:934403/1‑149 (MQ=255)
                                                                                               cTTCCAGCTTTCCAGCTGGACTTGCTGCCACTGACCCTCCTTCTGGATAAAACAGGGCTCATAGTCAAAAATGCTTTCGGCGTCTCCGGGGGAAGAAAACACTCTGAGCCCCCCACGAATACCGTAACACGAAACCATTTTTCCCaaaa                                                 >  2:218279/1‑149 (MQ=255)
                                                                                                gtccagctggaaagctGGACTTGCTGCCACTGACCCGCCTTCTGGATAAAACAGGGCTGATAGTCAAAAATGCTTTCGGCGTCATCGGAGGAAGAAAACACTCTGAGCCACCCACGAATACCGTAAGACGAACCCATTTTTCCCAAAAc                                                >  2:27915/13‑149 (MQ=255)
                                                                                                 tccagctttccagctGGACTTGCTGCCACTGACCCGCCTTCTGGATAAAACAGGGCTGATAGTCAAAAATGCTTTCGGCGTCTTCGGTGGAAGAAAACACTCTGAGCCACCCACGAATACCGTAAGACGAACCCATTTTTCCCAAAACg                                               >  2:61435/1‑149 (MQ=255)
                                                                                                 tccagctggaaagctGGACTTGCTGCCACTGACCCGCCTTCTGGATAAAACAGGGCTGATAGTCAAAAATGCTTTCGGCGTCTTCGGTGGAAGAAAACACTCTGAGCCACCCACGAATACCGTAAGACGAACCCATTTTTCCCAAAACg                                               >  1:619135/12‑149 (MQ=255)
                                                                                                  ccagctttccagctGGACTTGCTGCCACTGACCCGCCTTCTGGATAAAACAGGGCTGATCGTCAAAAATGCTTTCGGCGTCTTCGGTGGAAGAAAACACTCTGAGCCACCCACGAATACCGTAGGACGAACCCATTTTTCCCAAAACGa                                              >  1:1009305/1‑149 (MQ=255)
                                                                                                  ccagctttccagctGGACTTGCTGCCACTGACCCGCCTTCTGGATAAAACAGGGCTGATAGTCAAAAATGCTTTCGGCGTCtt                                                                                                                >  2:61397/1‑83 (MQ=255)
                                                                                                  ccagctttccagctGGACTTGCTGCCACTGACCCGCCTTCTGGATAAAACAGGGCTGATAGTCAAAAATGCTTTCGGCGTCtt                                                                                                                <  1:61397/83‑1 (MQ=255)
                                                                                                            agctGGACTGGCTGCCACTGACCCGCCTTCGGGATAAAACAGGGCTGATAGTCAAAAATGCTTTCGGCGTCTTCGGTGGAAGAAAACACTCTGCGCCACCCACGAATACCGTAAGACGAACCCATTTTTCCCAAAACGATGGGATCAAc                                    <  1:262860/149‑1 (MQ=255)
                                                                                                              ctGGACTTGCTGCCACTGACCCGCCTTCTGGATAAAACAGGGCTGATAGTCAAAAATGCTTTCGGCGTCTTCGGTGGAAGAAAACACTCTGAGCCACCCACGAATACCGTAAGAAGAACCCATTTTTCCAAAAACGATGGAGTCAAccg                                  >  2:91237/1‑147 (MQ=255)
                                                                                                                    ttGCTGCCACTGACCCGCCTTCTGGATAAAACAGGGCTGATAGTCAAGAATGCTTTCGGCGTCTTCGGTGGAAGAAAACACTCTGAGCCACCCACGAATACCGTAAGACGCTCACTTTGTATCCAAAACGATGGGATCAACAGGTGCtt                            <  2:249737/149‑1 (MQ=255)
                                                                                                                    ttGCTGCCACTGACCCGCCTTCTGGATAAAACAGGGCTGATAGTCAAAAATGCTTTCGGCGTCTTCGGTGGAAGAAAACACTCTGAGCCACCCACGAATACCGTAAGACGAACCCATTTTTCCCAAAACGATGGGATCAACAGGTGCtt                            >  2:562064/1‑149 (MQ=255)
                                                                                                                      gctgcCACTGACCCGCCTTCTGGATAAAACAGGGCTGATAGTCAAAAATGCTTTCGGCGTCTTCGGTGGAAGAAAACACTCTGAGCCACCCACGAATACCGTAAGACGAACCCATTTTTCCCAAAACGATGGGATCAACAGGTGCTTgc                          <  1:765414/149‑1 (MQ=255)
                                                                                                                        tgcCACTGACCCGCCTTCTGGATAAAACAGGGCTGATAGTCAAAAATGCTTTCGGCGTCTTCGGTGGAAGAAAACACTCTGAGCCACCCACGAATACCGTAAGACGAACCCATTTTTCCCAAAACGATGGGATCAACAGGTGCTTgcgc                        <  1:977312/149‑1 (MQ=255)
                                                                                                                          ccACTGACCCGCCTTCTGGATAAAACAGGGCTGATAGTCAAAAATGCTTTCGGCGTCTTCGGTGGAAGAAAACACTCTGAGCCACCCACGAATACCGTAAGACGAACCCATTTTTCCCAAAACGATGGGATCAACAGGTGCTTGCGCgg                      >  2:413015/1‑149 (MQ=255)
                                                                                                                           caatGACCCGCCTTCTGGATAAAACAGGGTTGATGGTCAAAAATGCTTTCGGCGTCTTCGGTGGAAGAAAACACTCTGAGCCACCCACGAATACCGTAAGACGAACCCATTTTTCCCAAAACGATGGGATCAACAGGTGCTTGCGCGGt                     <  2:160623/146‑1 (MQ=255)
                                                                                                                               gACCCGCCTTCTGGATAAAACAGGGCTGATAGTCAAAAATGCTTTCGGCGTTTTCGGTGGAAGAAAACACTCTGAGCCACCCACGAATACCGTAAGACGAACCCATTTTTCCCAAAACGATGGGATCAACAGGTGCTTGCGCGGTGAgt                 <  2:800362/149‑1 (MQ=255)
                                                                                                                                     ccTTCTGGATAAAACAGGGCTGATAGTCAAAAATGCTTTCGGCGTCTTCGGTGGAAGAAAACGCTCTGAGGCACCCACTGATACCGTAGGACGAACCCATTTTTCCCAAAACGATGGGATCAACAGGTGCTTGCGCGGTGAGTTGTTTg           <  2:811772/149‑1 (MQ=255)
                                                                                                                                     ccTTCGAGATAAGACAGGGCTGATAGTCGAAAGTGCTTTCGGCGTCTTCGGTGGAAGAAAACACTCTGAGCCACCCACGAATACCGTAAGACGAACCCATTTTTCCCAAGACGATGGGGTCAACAGGTGCTTGCGCGGTGAGTTGTTTg           <  1:208336/149‑1 (MQ=255)
                                                                                                                                        tCTGGATAAAACAGGGTTGATAGTCAAAAATGCTTTCGGCGTCTTTGGTTGTAGAAATCTCTCTGTGCCTCCCACGAATACCGTAAGACGAACCCATTTTTCCCAAAACGATGGGATCAACAGGTGCTTGCGCGGTGAGTTGTTTGCtc        <  2:373467/149‑1 (MQ=255)
                                                                                                                                             aTAAAACAGGGCTGATAGTCAAAAATGCTTTCGGCGTCTTCGGTGGAAGAAAACACTCTGAGCCACCCACGAATACCGTAAGACGAACCCATTTTTCCCAAAACGATGGGATCAACAGGTGCTTGCGCGGTGAGTTGTTTGCTcatcat   >  2:461030/1‑149 (MQ=255)
                                                                                                                                              tAAAACAGGGCTGATAGTCAAAAATGCTTTCGGCGCCTTCGGTGGAAGAAAACACTCTGAGCCACCCACGAATACCGTAAGACGAACCCATTTTTCTCAATTCGATTTGATAGAGAGGTGCGTGCGCGGTGAGTGGGTTGCGCAGCATg  >  1:477801/1‑149 (MQ=255)
                                                                                                                                                  |                                                                                                                                                
GATGAATCCACGACAATTTCACAATTCGTCAGCAGGTTCGCCGCATCACGATCGTCAACGCCTTTCAGCTTGATGATCATGTCCTGATTGTGGTGCTTCCAGCTTTCCAGCTGGACTTGCTGCCACTGACCCGCCTTCTGGATAAACCAGGGCTGATAGTCAAAAATGCTTTCGGCGTCTTCGGTGGAAGAAAACACTCTGAGCCACCCACGAATACCGTAAGACGAACCCATTTTTCCCAAAACGATGGGATCAACAGGTGCTTGCGCGGTGAGTTGTTTGCTCATCATG  >  CP009273/2738991‑2739281

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑