New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	2269338 =	0 (0.000)	36 (0.760)	32/296	0.5	100%	coding (587/1026 nt)	yejE	microcin C transporter YejABEF, permease subunit; ABC family
	?	CP009273	= 3577555	NA (NA)					intergenic (+15/‑1)	insB1/yrhA	IS1 transposase B/pseudogene, interrupted by IS1E

TCGCTGACGCCAAGCGCCTGTGCCGCACGAATGTAGTCGAAATTACGAGTACGTAAAAACTCCGCCCGCACCACGCCGACCAGACTCATCCAGCCAAACAAGACAGTAATTGCCAGCAGCCACCAGAAGTTAGGCTGTACGACGCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP009273/2269485‑2269338 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCG  <  CP009273/3577555‑3577415                                                                                                                                                                                                                                                                                                   TCGCTGACGCCAAGCGCCTGTGCCGCACGAATGTAGTCGAAATTACGAGTACGTAAAAACTCCGCCCACACCACGCCGACCAGACTCATCCAGCCAAACAAGACAGTAATTGCCAGCAGCCACCAGAAGTTAGGCTGTACGACGCTGGG                                                                                                                                              <  2:679165/149‑1   GCTGACGCCAAGCGCCTGTGCCGCACGAATGTAGTCGAAATTACGAGTACGTAAAAACTCCGCCCGCACCACGCCGACCAGACTCATCCAGCCAAACAAGACAGTAATTGCCAGCAGCCACCAGAAGTTAGGCTGTACGACGCTGGGGT                                                                                                                                            <  2:684433/149‑1      GACGCCAAGCGCCTGTGCCGCACGAATGTAGTCGAAATTACGAGTACGTAAAAACTCCGCCCGCACCACGCCGACCAGACTCATCCAGCCAAACAAGACAGTAATTGCCAGCAGCCACCAGAAGTTAGGCTGTACGACGCTGGGGTAAT                                                                                                                                         <  2:640749/149‑1           CAAGCGCCTGTGCCGCACGAATGTAGTCGAAATTACGAGTACGTAAAAACTCCGCCGGCACCACGCCGACCAGACTCATCCAGCCAAACAAGACAGAAATTGCCAGCAGCCACCAGAAGGTAGGCTGAACGACCCTGGGGTAATGACTC                                                                                                                                    >  1:506437/1‑149            AAGCGCCTGTGCCGCACGAATGTAGTCGAAATTACGAGTACGTAAAAACTCCGCCCGCACCACGCCGACCAGACTCATCCAGCCAAACAAGACAGTAATTGCCAGCAGCCACCAGAAGTTAGGCTGTACGACGCTGGGGTAATGACTCC                                                                                                                                   >  2:774057/1‑149             AGCGCCTGTGCCGCACGAATGTAGTCGAAATTACGAGTACGTAAAAACTCCGCCCGAACCACGCCGACCAGACTCATCCAGCCAAACAAGACAGAAATTTCCAGCACTCACCCGCAGTTAGGCGGTACGACGCCGAGGTAGTGGATCCA                                                                                                                                  >  1:207524/1‑149              GCGCCGGTGCCGCACGAATGTCGGCGAAATTACGAGTACGTAAAACCCCCGCCCGCACCACGCCGACCAGACTCATCCAGCCAAACAAGACAGTAATTGCCAGCAGCCACCAGAAGTTAGGCTGTACGACGCTGGGGTAATGACTCCAA                                                                                                                                 <  1:64323/149‑1               cgccgtgcCCGCACGAATGTAGTCCAAATTACGAGTACGTAAAAACTCCGCCCGCACCACGCCGACCAGACTCATCCAGCCAAACAAGACAGTAATTGCCAGCAGCCACCAGAAGTTAGGCTGTACGACGCTGGGGTAATGCCTGCAgc                                                                                                                                <  1:288618/141‑3                 CCTGTGCCGCACGAATGTAGTCGAAATTACGAGTACGTAAAAACTCCGCCCGCACCACGCCGACCAGACACATCCAGCCAAACAAGACAGTAATAGCCAGCAGCCACCAGAAGTTAGGCAGTACGACCCTGGGGTAATGAACCCAACTT                                                                                                                              >  1:364050/1‑149                   TGTGCCGCACGAATGTAGTCGAAATTACGAGTACGTAAAAACTCCGCCCGCACCACGCCGACCAGACTCATCCAGCCAAACAAGACAGTAATTGCCAGCAGCCACCAGAAGTTAGGCTGTACGACGCTGAGATAATGACTACAACTTAT                                                                                                                            >  2:35425/1‑149                             GAATGTAGTCGAAATTACGAGCACGTAAAAACTCCGCCCGCACCACGCCGACCAGATTCATCCAGCCAAACAAGACAGGAATCGCCAGCAGCCACCAGAAGTTAGGCTGTACGACGCTGGGGTAATGACTCCAACTTATTGATAGTGTT                                                                                                                  <  2:316484/149‑1                                     TCGAAATTACGAGTACGTAAAAACTCCGCTCGCACCACGCCGACCAGACTCATCCAGCCAAACAAGACAGTAATTGCCAGCAGCCACCAGAAGTTAGGCTGTACGACGCTGGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTC                                                                                                          <  2:38639/149‑1                                     TCGAAATTACGAGTACGTAAAAACTCCGCCCGCACCACGCCGACCAGACTCATCCAGCCAAACAAGACAGTAATTGCCAGCAGCCACCAGAAGTTAGGCTGTACGACGCTGGGGTAATGACTCCAACTTATTGATAGCGTTTTATGTTC                                                                                                          >  1:275115/1‑149                                        acaatgCGACTACGTAAAAACCCCGCCCCCACCACGCCGACCAGACTCATCCAGACAAACAAGACAGTAATTGCCAGCAGCCACCAGAAGTCAGGCTGTACGACGCTGGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGA                                                                                                       <  1:557055/143‑1                                             agGAGGACGTAAAAACTCCGCGCGCACCACGCCGACCAGACTCATCCAGCCAAACAAGACAGTAATTGCCAGCAGCCACCAGAAGTTAGGCAGTATTACGCTGGGGTAATGCCTCCAACTTATTGATAGTGTTTTATGTTCAGATAATG                                                                                                  <  2:151129/147‑1                                                     GTAAAAACTCCGCCCGCACCACGCCGACCATACTCATCCAGCCAAACAAGACAGTAATTGCCAGCAGCCACCAGAAGTTAGGCTGTACGACGCTGGCGCAATGACACGAACATATTGATAGTGCTTTATGTGCAGATAATGCCCGATGA                                                                                          >  2:404844/1‑149                                                         AAACTCCGCCCGCACCACGCCGACCAGACTCATCCAGCCAAACAAGACAGTAATTGCCAGCACCCACCAGAAGTTAGGCTGTACGACGCTGGGGTAATGACTCCAACTTATAGATAGTGTATTATGTTCAGGTAATGCACGATGACTTT                                                                                      >  2:44700/1‑149                                                                GCCCGCACCACGCCGACCAGATTCATCCAGCCAAACAAGACAGTAATTGCCAGCAGCCACCAGAAGTTAGGCTGTACGACGCTGGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGC                                                                               <  2:69382/149‑1                                                                  CCGCACCACGCCGACCAGAGTCATCCAGCCAAACAAGACAGTAATTGCCAGCAGCCACCAGAAGTTAGGCTGTACGACGCTGGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAG                                                                             <  1:184681/149‑1                                                                               ACCAGACTCATCCAGCCAAACAAGACAGTAATTGCCAGCAGCCACCAGAAGTTAGGCTGTACGACGCTGGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTTCACCGATTTT                                                                <  2:735192/149‑1                                                                                   GACTCATCCAGCCAAACAAGACAGTAATTGCCAGCAGCCACCAGAAGTTAGGCTGTACGACGCTGGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCCCCGATTTTGAag                                                            >  1:408059/1‑147                                                                                      TCATCCAGCCAAACAAGACAGTAATTGCCAGCAGCCACCAGAAGTTAGGCTGTACGACGCTGGGGTAATGACTCCAACTTATTGATAGTGTTCTAAGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACG                                                         >  2:725600/1‑149                                                                                                AAACAGAACAGTAATTGCCAGCGGCCACCAGAAGTTAGGCGGTACGACGCTGGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGCCAGCGACTT                                               >  1:571231/1‑149                                                                                                         AGTAATTGCCAGCAGCCACCAGAAGTTAGGCTGTACGACGCTGGGGTAATGACTCCAACTTATTGAAAGTGTTGTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGACCGACAGCGACTTCCGTCCCAG                                      >  1:61590/1‑149                                                                                                                  CAGCCGCCACCAGCAGTTCGGCTGTACGACGCTGGGGTAATTACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAG                             <  1:504308/149‑1                                                                                                                  CAGCAGCCACCAGAAGTTAGGCTGTACGACGCTGGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAG                             <  1:690930/149‑1                                                                                                                       GCCACCAGAAGTTAGGCTGTACGACGCTGGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCT                        <  1:408111/149‑1                                                                                                                           CCAGAAGTTAGGCTGTACGACGCTGGGGTAACGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCT                    >  1:272403/1‑149                                                                                                                               AAGTTCGGCTGTACGACGCTGGGGTAATGCCTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGAGGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGA                <  2:303125/149‑1                                                                                                                                  TTAGGCTGTACGACGCTGGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGGACGACAGCGACTTCCGTCCCAGCCCTGCCAGACGCTGCCTCAGATcc             >  2:543651/1‑147                                                                                                                                    AGGCTGTACGACGCTGGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAG           <  2:611080/149‑1                                                                                                                                        TGTACGACGCTGGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTATCATGCAGCTCCACCGATTTTGAGAAAGACAGCGACTTCCGTCCCAGCCGTGCCCGGTGCTGCCTCAGATTCAGGTTA       >  2:591821/1‑149                                                                                                                                          TACGACGCTGGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATG     <  1:369078/149‑1                                                                                                                                          TACGACGCGGGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTAAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATG     <  1:35425/149‑1                                                                                                                                             ggCGCTGGGGTAATGACTCCAGCTTACGGATGGTGTTTTATTTTCAGAGAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGATCGACATCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCCGGTTATGCCG  <  1:3635/147‑1                                                                                                                                             GACGCGGGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCG  >  1:436615/1‑149                                                                                                                                                                                                                                                                                                   TCGCTGACGCCAAGCGCCTGTGCCGCACGAATGTAGTCGAAATTACGAGTACGTAAAAACTCCGCCCGCACCACGCCGACCAGACTCATCCAGCCAAACAAGACAGTAATTGCCAGCAGCCACCAGAAGTTAGGCTGTACGACGCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP009273/2269485‑2269338 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCG  <  CP009273/3577555‑3577415

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.