| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC | CP009273 | 2,420,336 | +AAAA | intergenic (‑69/+152) | hisJ ← / ← argT | histidine/lysine/arginine/ornithine transporter subunit/lysine/arginine/ornithine transporter subunit |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 2420332 | 4 (0.070) | 47 (0.820) +AAAA |
39/280 | 0.4 | 92.3% | intergenic (‑65/+156) | hisJ/argT | histidine/lysine/arginine/ornithine transporter subunit/lysine/arginine/ornithine transporter subunit |
| ? | CP009273 | 2420333 = | 4 (0.070) | intergenic (‑66/+155) | hisJ/argT | histidine/lysine/arginine/ornithine transporter subunit/lysine/arginine/ornithine transporter subunit | |||||
TTGCGGAATCGCAGCAAACGCCGCAGTTGCGCTGGAGAAGGCCAGAACCAGAGAGAGCGATAGCACCAGTTTTTTCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTT‑ACAGGTTTGTTACACTTATCGTGCCAT‑‑‑‑A‑‑‑‑AAATTGACCATCAAGGCAAAATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAGGTACAGCTTCCCAGC > CP009273/2420190‑2420481 | tttgtggaatcgcagcacacgccgtagttgcgctggagaaggccagaaccagagagagcgatagcaccagttttttcttaatgtcctcaactgacagtctttttatagggaatatttacaggtttgttacacttatcgtaccataaaaa < 1:216742‑M2/1‑1 (MQ=255) cggaatcgcagcaaacgccgcagttgcgctggagaaggccagaaccagagagagcgatagcaccagttttttcataatgtcctcaactgacagtctttttatagggaatatttacaggtttgttacacttatcgtaccataaaaA‑‑‑‑AAAt > 1:761081‑M2/145‑149 (MQ=255) ggaatcgcagcaaacgccgcagttgcgctggagaaggccagaaccagagagagcgatagcaccagttttttcataatgtcctcaactgacagtctttttatagggaatatttacaggtttgttacacttatcgtcccataaaaA‑‑‑‑AAAtt > 2:68701‑M2/144‑149 (MQ=255) ggaatcgcagcaaacgccgcagttgcgctggagaaggccagaaccagagagagcgatagcaccagttttttcataatgtcctcaactgacagtctttttatagggaatatttacaggtttgttacacttatcgtaccataaaaA‑‑‑‑AAAtt > 1:95457‑M2/144‑149 (MQ=255) acacgcagcaaacgccgcagttgcgcgggagaaggccagaaccagagagagcgatagcaccagttttttcataatgtcctcaactgacagtctttttatagggaatatttacaggtttgttacacttatcgtaccataaaaA‑‑‑‑AAATTGa < 1:350855‑M2/8‑1 (MQ=255) aatcgcagcaaacgccgcagttgcgacggcgaaggccagaaccagagagagctatagcatcagtgttttcataatgtcctcaactgacagtctttttatagggaatatttacaggtttgttacacttatcgtaccataaaaA‑‑‑‑AAATTGa < 2:2643‑M2/8‑1 (MQ=255) tcgcagcaaccgccgccattgcgctggagaaggccagaaccagagagagcgatagcaccagttttttcataatgtcctcaactgacagtctgtttatagggaatatgtacgggtttgttacacttgtcgcaccatgaaaA‑‑‑‑AACTTGAcc > 2:185971‑M2/140‑149 (MQ=255) cagcaaacgccgcagttgcgctggagaaggccagaaccagagagagcgatagcaccagttttttcatcatgtcctcaactgacagtctttttatagggaatatttacaggtttgttacacttatcgtaccataaaaA‑‑‑‑AAATTAACCCTc > 1:688977‑M2/137‑149 (MQ=255) agcaaacgccgcagttgcgctggagaaggccagaaccagagagagcgatagcaccagttttttcataatgtcctcaactgacagtctttttatagggaatatttacaggtttgttacacttatcgtaccataacaA‑‑‑‑AAATTGACCATCa > 1:36476‑M2/136‑149 (MQ=255) caAACGCCGCAGTTGCCCTGGAGAAGGCCAGAACCAGAGAGAGCGATAGCACCAGTTTTTTCATCATGTACTCAACTCCAACTCTTTCTATATGGAATATTTGACA‑ATACTTTACACTTATCGTACCATAACAA‑‑‑‑AAATTGACCATCAAg < 2:917969/149‑1 (MQ=255) aaacgccgcagttgcgctggagaaggccagaaccagagagagcgatagcaccagtgttttcataatgtcctcaactgacagtctttttatagggaatatttacaggtttgttacacttaacgtaccataaaaA‑‑‑‑AAATTGACCATCAAgg > 2:610806‑M2/133‑149 (MQ=255) ccgcagttgcgctggagaaggccagaaccagagagagcgatagcaccagttttttcataatgtcctcaactgacagtctttttatagggaatatttacaggtttgttacacttatcgtaccataaaaA‑‑‑‑AAATTGACCATCAAGGCaaaa < 2:863721‑M2/22‑1 (MQ=255) ccgcagttgcgctggacaatgccagaaccagagagagcgatagcaccagttgtttcacaatgtcctcaactgacagtctttctatagggaatatttacaggtttgttacacttatcgtaccataaaaA‑‑‑‑AAATTGACCATCAAGGCaaaa < 2:250378‑M2/22‑1 (MQ=255) cgcagttgcgctggagaaggccagaaccagagagagcgatagcaccagttttttcataatgtcctccactagcagtctttttatagggaagatttccagggttgttacacttatcgtaccataaaaA‑‑‑‑AAATTGAACATCCGAGcaaaaa > 1:451165‑M2/127‑148 (MQ=255) gctggagaaggccagaaccagagagagcgatagcaccagttttttcataatgtcctcaactgacagtctttttatagggaatatttacaggtttgttacacttatcgtaccataaaaA‑‑‑‑AAATTGACCATCAAGGCAAAATATCCCGccc > 1:503299‑M2/118‑149 (MQ=255) aaggccagaaccagagagagcgatagcaccagttttttcataatgtcctcaactgacagtatttttatagggaatatttacaggtttgttacacttatcgtaccataaaaA‑‑‑‑AAATTGACCATCAAGGCAAAATATCCCGCCCCGTTAGa < 1:111660‑M2/39‑1 (MQ=255) aggacagaaccagagagagcgatagcaccagttttttcataatgtcctcaactgacagtctttttatagggaatatttacaggtttgttacacttatcgtaccataaaaA‑‑‑‑AAATTGACCATCAAGGCAAAATATCCCGCCCCGTTAGAc < 1:455109‑M2/40‑1 (MQ=255) gccagaaccagagagagcgatagcaccagttttttcataatgtcctcaactgacagtctttttatagggaatatttacaggtttgttacacttatcgtaccataaaaA‑‑‑‑AAATTGACCATCAAGGCAAAAAATCCCGCCCCGTTAGACGt > 2:368002‑M2/108‑149 (MQ=255) cagaaccagagagagcgatagcaccagttttttcataatgtcctcaactgacagtctttttatagggaatatttacaggtttgttacacttatcgtaccataaaaA‑‑‑‑AAATTGACCATCAAGGCAAAATATCCCGCCCCGTTAGACGtat > 1:45520‑M2/106‑149 (MQ=255) gcaccatagagatcgatagcaccagttttttcataatgtcctcaactgacagtctttttatagggaatatttacaggtttgttacacttatcgtaccataaaaA‑‑‑‑AAATTGACCATCAAGGCAAAATATCCCGCCCCGTTAGACGtatta < 2:761081‑M2/46‑1 (MQ=255) aaccagagagagcgatagcaccagttttttcataatgtcctcaactgacagtctttttatagggaatatttacaggtttgttacacttatcgtaccataaaaA‑‑‑‑AAATTGACCATCAAGGCAAAATATCCCGCCCCGTTAGACGtattat > 2:447759‑M2/103‑149 (MQ=255) ccagagagagcgatagcaccagttttttcataatgtcctcaactgacagtctttttatagggaatatttacaggtttgttacacttatcgtaccataaaaA‑‑‑‑AAATGGACCATCAAGGCAATATATCCCGCcccgttagacacatgtttt > 1:537205‑M2/101‑140 (MQ=255) gggagagcgatagaaccagttttctcataatgtcctcaactgacagtctttttatagggaatatttacaggtttgttacacttatcgtaccataaaaA‑‑‑‑AAATTGACCATCAAGGCAAAATATCCCGCCCCGTTAGACGTATTATTTTTc < 1:190330‑M2/52‑1 (MQ=255) gagagcgctatagcgcctgtttttgcagactggcctcagctgacagtctttttctagggaatatttacaggtttgtttcacttatcataccataaaaA‑‑‑‑AAATTGACCATCAAGGCAAAATATCCCGCCCCGTTAGACGTATTATTTTTc < 2:319099‑M2/52‑1 (MQ=255) gagagagcgatcgcaccagttttttcatattgtcctcaactgccagtctttataacacggttaatgacaggtttgttacacttatcgtaccataaaaA‑‑‑‑AAATTGACCATCAAGGCAAAATATCCCGCCCCGTTAGACGTATTATTTTTc < 1:938091‑M2/52‑1 (MQ=255) gagagagcgatagcaccagttttttcataatgtcctcaactgacagtctttttatagggaatatttccaggtatgttacacttatcgtaccataaaaA‑‑‑‑AAATTGACCATCAAGCCAAAATATCCCGCCCCATTAGACGTATTATTTTTc > 1:821554‑M2/98‑149 (MQ=255) gagagagcgatagcaccagttttttcataatgtcctcaactgacagtctttttatagggaatatttacaggtttgttacacttatcgtaccataaaaA‑‑‑‑AAATTGACCATCAAGGCAAAATATCCCGCCCCGTTGGACGTATTATTTTTc > 1:214014‑M2/98‑149 (MQ=255) gagagagcgatagcaccagttttttcataatgtcctcaactgacagtctttttatagggaatatttacaggtttgttacacttatcgtaccataaaaA‑‑‑‑AAATTGACCATCAAGGCAAAATATCCCGCCCCGTTAGACGTATTATTTTTc > 1:214035‑M2/98‑149 (MQ=255) agggggcgatagcaccagttttttcataatggtcgcaactgacagtctttttatagggaatatttacaggtttgttacacttatcgtaccataaaaA‑‑‑‑AAATTGACCATCAAGGCAAAATATCCCGCCCCGTTAGACGTATTATTTTTCa < 2:75768‑M2/53‑1 (MQ=255) agagagcgatagcaccagttttttcataatgtcctcaactgacagtctttttatagggaatatttacaggtttgttacacttatcgtaccataaaaA‑‑‑‑AAATTGACCATCAAGGCAAAATATCCCGCCCCGTTAGACGTATTATTTTTCa < 2:548829‑M2/53‑1 (MQ=255) agCGATAGCACCAGTTTTTTCATTTTTTTTTCAACCGAAAGTCTGCCTATAGGAAATATTT‑ACAGGTTTGTTGCACTCACCGTACCAT‑‑‑‑AAAAGAAATTGACCATCAAACCAAAATATCCTCCCCCTTTACACGTATAATTCTTCATCaa > 2:164812/1‑149 (MQ=255) agagtgcatgagttttttaatattgtcctgaactgacagtctttttataggtaatttttatatgtttgttacacttatcgtaccataaaaA‑‑‑‑AAATTGACCATCAAGGCAAAATATCCCGCCCCGTTAGACGTATTATTTTTCATTaaaa < 2:955897‑M2/59‑1 (MQ=255) caccagttttttcataatgtcctcaactgacagtctttttatagggaatatttacaggtttgttacacttatcggaacataaaaA‑‑‑‑AAATTGACCATCAAGGCAAAATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCtt < 1:76907‑M2/65‑1 (MQ=255) accagttttttcataatgtcctcaactgacagtctttttatagggaatatttacaggcttgtaacacgtatcgtatctgataaG‑‑‑‑AAATTGACCATCAAGGCAAAAGAGCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTa > 1:942747‑M2/84‑149 (MQ=255) tttggaTAAGGTCCGCAACGGACAGTCTTTACATAGGCAATATTT‑ATAGGTCTGTTACACTTATAAAAAAAAAAAAA‑‑‑‑AAATTGACCATCAAGGCAAAATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGc < 2:666203/144‑1 (MQ=255) ttttcataatgtcctcaactgacagtctttttatagggaatatttacaggtttgttacacttatcgtaccataaaaA‑‑‑‑AAATTGACCATCAAGGCAAAATATCCCGCCCCGTTAAACGTATTATTTTTCATTAAAAATGCTTACGTAtga > 2:151193‑M2/77‑148 (MQ=255) tttcataatgtcctcaactgacagtctttttatagggaatatttacaggtttgttacacttatcgtaccataaaaA‑‑‑‑AAATTGACCATCAAGGCAAAATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCa > 1:839986‑M2/76‑149 (MQ=255) taatgtcctcaactgacagtctttttatagggaatatttacaggtttgttacacttatcgtaccataaaaA‑‑‑‑AAATTGACCATCAAGGCAAAATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCATTTCa > 1:468821‑M2/71‑149 (MQ=255) ctgtcctctacggacggtctttgtatagggaatattttcaggtttgttacacttatcctaccataaaaA‑‑‑‑AAATTGACCTTCAAGGCAAAATATCCCGCCCCGGTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCATTTCAAt < 2:480523‑M2/81‑1 (MQ=255) actgacagtctttttatagggaatatttacaggtttgttacacttatcgtaccataaaaA‑‑‑‑AAATTGACCATCAAGGCAAAATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGa > 1:33432‑M2/60‑149 (MQ=255) cagtctttttatagggaatatttacaggtttgttacacttatcgtaccataaaaA‑‑‑‑AAATTGACCATCAAGGCAAAATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTg < 2:942747‑M2/95‑1 (MQ=255) tctttttatagggaatatttacaggtttgttacacttatcgtaccataaaaA‑‑‑‑AAATTGACCATCAAGGCAAAATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGcaa > 2:548966‑M2/52‑149 (MQ=255) cTTTTTATAGGGAATATTT‑ACAGGGTTGTTACACTTATCGTACCATAAAAA‑‑‑‑AAATTGACCATAAAGGGAAAATATCCCGCCCCGGTGGACGTATTATTTTTCATTAAGAATGCTTAAATATGCATTTCAAAGCACCACGAAAGaacaac > 1:91187/1‑149 (MQ=255) gggaataattacaggttggttacacttatcgtaccataaaaA‑‑‑‑AAATTGACCATCAAGGCAAAATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTAAGCATTTCAATGCGCCACGATAGTGCAACAAACCTGGc < 1:617991‑M2/108‑1 (MQ=255) tttgttacacttatcgtaccataaaaA‑‑‑‑AAATTGACCATCAAGGCAAAATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATgatgat > 1:244604‑M2/27‑149 (MQ=255) tgttacacttatcgtaccgtaaaaA‑‑‑‑AAATTGACCATCAAGGCAAAATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATCGTGCAACAACCCTGGCGTGCACCATGATGATCa < 1:610806‑M2/125‑1 (MQ=255) tgttacacttatcgtaccataaaaA‑‑‑‑AAATTGACCATCAAGGCAAAATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCa < 2:503299‑M2/125‑1 (MQ=255) ttacacttatcgtaccataaaaA‑‑‑‑AAATTGACCATCAAGGCAAAATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTAAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCAtt > 1:208821‑M2/23‑149 (MQ=255) acttatcgtaccataaaaA‑‑‑‑AAATTGACCATCAAGGCAAAATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGGGCAACAAACCTGGCGTGCACCGTGATGATCATTCCAt > 1:410893‑M2/19‑149 (MQ=255) atcgtaccataaaaA‑‑‑‑AAATTGACCATCAAGGCAAAATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAgg > 1:450644‑M2/15‑149 (MQ=255) ccaaaaaaA‑‑‑‑AAATTGACCATCAAGGCAAAATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAGGTACAGc < 1:292068‑M2/141‑1 (MQ=255) ccaaaaaaA‑‑‑‑AAATTGACCACCAAGGCAAAATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCATTCCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAGGTACAGc < 2:36476‑M2/141‑1 (MQ=255) cataaaaA‑‑‑‑AAATTGACCATCAAGGCAAAATATCCCGCCCCGTTAGACGTATTATTATTCATTAAAACTCGTTAAGTATGCATTTCGATGCACCACGATAGTGCAACAAACCTGGCGTGCCCCGGGATGCACATTCCATCAGGTAGAGCt > 2:108070‑M2/8‑149 (MQ=255) taaaaA‑‑‑‑AAATTGACCATCAAGGCAAAATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAGGTACAGCTTc > 1:857816‑M2/6‑149 (MQ=255) taaaaA‑‑‑‑AAAGTGGCCATAAAGGCAAAATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACTATgatgatcattccatacggtaggttgcc < 2:9670‑M2/144‑14 (MQ=255) aaA‑‑‑‑AAATTGACCATCAAGGCAAAATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAGGTACAGCTTCCCa > 1:823253‑M2/3‑149 (MQ=255) aA‑‑‑‑AAATTGACCATCAAGGCAAAATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCCCCATGATGATCATTCCATCAGGTACAGcttccagg > 1:628210‑M2/2‑146 (MQ=255) a‑‑‑‑aaaTTGTGCTTCAAGGCAAAAGATGCCGCCCCGTTAGACGTATTATTTTTCATTGAAAATGCTTAAGTATGCATTGCAATGCACCACGATAGTGCAACAAGCCTGGCGTGCACCATGATGATCATTCCATCAGGTACAGCTTCCCAGc < 1:775678/149‑1 (MQ=255) | TTGCGGAATCGCAGCAAACGCCGCAGTTGCGCTGGAGAAGGCCAGAACCAGAGAGAGCGATAGCACCAGTTTTTTCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTT‑ACAGGTTTGTTACACTTATCGTGCCAT‑‑‑‑A‑‑‑‑AAATTGACCATCAAGGCAAAATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAGGTACAGCTTCCCAGC > CP009273/2420190‑2420481 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |