New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 = 1391495NA (NA)118 (0.980) 82/294 0.3 97.5% intergenic (+146/‑127) insH1/ynaJ IS5 transposase and trans‑activator/DUF2534 family putative inner membrane protein
?CP009273 = 1972751 3 (0.030)intergenic (‑297/‑483) flhD/uspC flagellar class II regulon transcriptional activator, with FlhC/universal stress protein

Only 100 of 106 total aligned reads displayed.

CTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACTGAAGT  >  CP009273/1391353‑1391643
                                                                                                                                              |                                                                                                                                                    
cTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCctaact                                                                                                                                                >  2:1212410/1‑149 (MQ=11)
  ggggATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCctaactaa                                                                                                                                              >  1:1512515/1‑149 (MQ=32)
      aTAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAAGCaa                                                                                                                                          >  2:856582/1‑149 (MQ=17)
        aaCGCCCTAAATCGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATg                                                                                                                                        <  2:1556137/149‑1 (MQ=255)
         aCGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAACGAAATGACTCAGCCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGc                                                                                                                                       <  2:328888/149‑1 (MQ=255)
            ccTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGtt                                                                                                                                    <  2:1716759/149‑1 (MQ=40)
                aaagcgCGAAGAAACCGCCTAAATAGGCTGATGTAAGGCATTTACGGGAGAAAAAACCCGCTCAAACACGAAGAAATGAAACCACTGAGTCACCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGAtt                                                                                                                                <  2:126024/144‑1 (MQ=14)
                aaaTGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGAtt                                                                                                                                <  1:679894/149‑1 (MQ=255)
                 aaTGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAACGCATTGAtta                                                                                                                               <  2:1480354/149‑2 (MQ=255)
                  aTGGGGAAGTAACTGTCTAAATAGGCTGATTCAAGGCATGTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGt                                                                                                                              <  2:868839/149‑1 (MQ=255)
                  aTGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGt                                                                                                                              <  2:1721045/149‑1 (MQ=255)
                       gaagaaACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATc                                                                                                                         >  2:1117387/1‑149 (MQ=255)
                       gaagaaACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCAACTTCCCTAACTAATCAATGCGTTGATTGTAAATc                                                                                                                         >  2:1943028/1‑149 (MQ=255)
                         agaaACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCa                                                                                                                       <  2:1063356/149‑1 (MQ=255)
                           aaaCGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTGATTCGCACCTTCCCTTTCTAATCTATGCGTTGATTGTAAATCCAGc                                                                                                                     <  2:1363292/149‑1 (MQ=255)
                           aaaCGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATAGGCTCACGCATGAAGAAATGAAATGCCAGAGTCCGCCGATAAGAATGTCCTCACTTCTTCGCACCTTCCCTAACTCATCAATGCGTTGATCGTAAATCCAGc                                                                                                                     <  2:497323/149‑1 (MQ=14)
                           aaaCGGTCTAAAGCGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAGCTAATCAATGCGTTGATTGTAAATCCAGc                                                                                                                     <  1:1238846/149‑1 (MQ=255)
                             aCGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGATGAAAACGGCTCAAACATGAAGAAGTGATAAGACTGAGTCCGCCGAGAAGAATTTCCCCGCTTGTTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTTAATCCCGCTa                                                                                                                   >  1:1834711/1‑149 (MQ=17)
                                 tCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAagag                                                                                                               >  2:971441/1‑149 (MQ=255)
                                    aagtAGGCTGGTGTAGGGCATTTACGGGAGAAAAGATCGGCGCAAACATGAAGAAATGAGATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCGCCTTCCCTAACTAGTCGAGGCGTTGATTGTAAATCCAGCTAAgaggtg                                                                                                            <  2:365739/146‑1 (MQ=17)
                                       tAGGCTGATTCAAGGCAGTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCTCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAgaggtgagg                                                                                                         <  2:1062781/149‑1 (MQ=255)
                                        aGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCTGCTTATTCGCACCTTCCCTAACTAATCAATGCGCCGATTGTAAATCCAGCTAAgaggtgaggt                                                                                                        <  1:1280246/149‑1 (MQ=255)
                                          gCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACCTTTAGAAATCAAATGGATGAATCTGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGttt                                                                                                      >  2:1390459/1‑149 (MQ=18)
                                          gCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGttt                                                                                                      >  1:1819006/1‑149 (MQ=255)
                                          gCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGttt                                                                                                      >  2:1093107/1‑149 (MQ=255)
                                           cggATTTAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAACGCCTGAGTCAGCCGAGAAGAATTTCCCCGCTCATTCGCACCTTCCCTAACTAATCATTGCGTTGATTGTAAATCCAGCTATGAGGTGAGGtttt                                                                                                     <  2:1206790/147‑1 (MQ=18)
                                           cTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGtttt                                                                                                     >  1:446597/1‑149 (MQ=255)
                                             gATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCa                                                                                                   <  2:744650/149‑1 (MQ=255)
                                                tCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCagag                                                                                                >  2:1327963/1‑149 (MQ=255)
                                                 cAAGGCATTTACGGGAGAAAACATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGc                                                                                               <  2:1783293/149‑1 (MQ=255)
                                                  aaGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGGGAGGTTTTCAGAGCa                                                                                              >  1:1025319/1‑149 (MQ=255)
                                                   aGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACAAAGCCGAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGGTTTCAGAGCAg                                                                                             >  1:1431664/1‑149 (MQ=18)
                                                     gCATTTACGGGAGAAAAAATCGGCTCAAACATGACGCAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGAc                                                                                           >  1:964069/1‑149 (MQ=255)
                                                       aTTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACaa                                                                                         >  1:1507679/1‑149 (MQ=255)
                                                       aTTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGCTGAGGTTTTCAGAGCAGACaa                                                                                         >  2:588892/1‑149 (MQ=255)
                                                           cgcggAGAAAAAATCGGCCCAAACATCAAGAACTGAAATGCCTGAGTCAGCCCAGAAGAATTTCCCCGCTTATTCGCACCTTCCCCAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGt                                                                                     <  1:63748/146‑1 (MQ=25)
                                                             gggAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAGCGGTGa                                                                                   >  1:53995/1‑149 (MQ=255)
                                                                agaAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCt                                                                                                                    <  2:1008609/113‑1 (MQ=255)
                                                                agaAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCt                                                                                                                    >  1:1008609/1‑113 (MQ=255)
                                                                  aaaaaaTCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGt                                                                              >  2:1379572/1‑149 (MQ=255)
                                                                  aaaaaaTCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAAAAGAATTACCAAGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCGAAGCGGCGAGGTTATCAGAGCAGACAACTGTGAAATgg                                                                              >  2:1344643/1‑148 (MQ=21)
                                                                   aaaaaTCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTc                                                                             <  1:1385683/149‑1 (MQ=255)
                                                                    aaaaTCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCTATAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCa                                                                            <  1:856582/149‑1 (MQ=255)
                                                                    aaaaTCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCTGTCAACGGTGAAATGTCa                                                                            <  2:1695975/149‑1 (MQ=255)
                                                                    aaaaTCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCa                                                                            <  1:1117387/149‑1 (MQ=255)
                                                                      aaTCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATg                                                                          <  2:955968/149‑1 (MQ=255)
                                                                               aaaCATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGACATGTCCTGGTATTGttg                                                                 >  2:1797121/1‑148 (MQ=255)
                                                                                 aCATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAACTGTCATGGTATTGTTGCg                                                               >  1:924960/1‑149 (MQ=255)
                                                                                  cATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGt                                                              <  2:1783134/149‑1 (MQ=255)
                                                                                    tGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGttt                                                            <  1:1212410/149‑1 (MQ=255)
                                                                                     gaagaaATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTa                                                           >  1:1327787/1‑149 (MQ=255)
                                                                                     gaagaaATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTa                                                           >  2:688984/1‑149 (MQ=255)
                                                                                     gaagaaATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTa                                                           >  1:1123333/1‑149 (MQ=255)
                                                                                     gaagaaATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGGTTTCAGAGCAGACAAAGGTGAAATGTCATGGTATTGTTACGTTTa                                                           >  2:1249215/1‑149 (MQ=255)
                                                                                     gaagaaATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATACGTTGATTGTAAATCCAGCTAAGAGGTGAGGCTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTCTa                                                           >  1:1711518/1‑149 (MQ=255)
                                                                                      aagaaATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGTTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAg                                                          >  1:1608161/1‑149 (MQ=255)
                                                                                      aagaaATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAg                                                          >  1:145805/1‑149 (MQ=255)
                                                                                      aagaaATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAg                                                          >  2:1317381/1‑149 (MQ=255)
                                                                                      aagaaATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAACCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAg                                                          <  2:1834711/149‑1 (MQ=255)
                                                                                       agaaATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAgg                                                         <  1:1886677/149‑1 (MQ=255)
                                                                                          aatgaaatgaCTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTaa                                                      <  1:202578/149‑1 (MQ=255)
                                                                                          aatgaaatgaCTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTaa                                                      <  1:1515624/149‑1 (MQ=255)
                                                                                          aatgaaaagaCTGAGTCAGCCGCGACGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTaa                                                      <  2:1290756/149‑1 (MQ=255)
                                                                                             gaaatgaCTGAGTGAGCCGAGAAGAATTTCCCCGCATATTCGCACCTTCCCTAACTAAGCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCCGACAACGGTGAAATGCCAAGGTCTTGTTACGCTTAGGTAACaa                                                   >  2:1197179/1‑149 (MQ=37)
                                                                                              aaatgaCTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAg                                                  <  2:1829216/149‑1 (MQ=255)
                                                                                              aaatgaCTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAg                                                  <  2:465143/149‑1 (MQ=255)
                                                                                               aatgaCTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGa                                                 >  2:1597494/1‑149 (MQ=255)
                                                                                                 tgaCTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGaaa                                               <  1:29134/149‑1 (MQ=255)
                                                                                                    cTGAGTCAGCCGATAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCACACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAAttt                                            <  1:1406227/149‑1 (MQ=255)
                                                                                                     tGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTg                                           >  1:1112543/1‑149 (MQ=255)
                                                                                                     tGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTGTCAGAGCAGACAACGGTGAAATGTCCTGGTATTGTTACGTTTAGGTAACAAGAAATTTg                                           >  2:1413283/1‑149 (MQ=255)
                                                                                                       aGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTc                                         >  2:724511/1‑149 (MQ=255)
                                                                                                        gTCAGCCGAGAAGAATTTCCCCGCTTATTTGCACCTTCCCTAACTAATCCATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCt                                        <  2:1061260/149‑1 (MQ=255)
                                                                                                          cAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGc                                      <  1:717773/149‑1 (MQ=255)
                                                                                                           attggataagaaTTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGca                                     <  1:1903092/142‑1 (MQ=255)
                                                                                                           aGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGca                                     >  1:1075900/1‑149 (MQ=255)
                                                                                                            gCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAAACCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGcac                                    >  2:909229/1‑149 (MQ=255)
                                                                                                                agaagaATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCTGAGCAGACAACGGTGAAACGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAgg                                <  1:971441/149‑1 (MQ=255)
                                                                                                                agaagaATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAgg                                <  1:1594105/149‑1 (MQ=255)
                                                                                                                  aagaaTTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGAt                              >  1:222553/1‑149 (MQ=255)
                                                                                                                  aagaaTTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGGCTGCACAAGGAt                              >  1:333158/1‑149 (MQ=255)
                                                                                                                   agaaTTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGAtt                             >  1:1785593/1‑149 (MQ=255)
                                                                                                                   agaaTTCCCCCGCTTATGTGCACCTTCCCTAACTGATCAATGCGTTGGTTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGAtt                             <  2:444354/149‑1 (MQ=255)
                                                                                                                         tCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGGTTAGGTACCAAGAAATTTTGCTGCACAAGGATTAcatca                       >  2:1684357/1‑149 (MQ=255)
                                                                                                                            cgacTTATTCCCACCCTCCCAAACTAATCAGTTCGTTGAGTGTAAATCCAGCTAAGAGGTTATGTTTTCAGAGCAGACAACGGTGAAATGTCATTGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGa                    <  2:1278742/146‑1 (MQ=255)
                                                                                                                            ccGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGa                    >  2:382668/1‑149 (MQ=255)
                                                                                                                            ccGCTTATTCGCACCTTCCCTAACGAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGa                    >  1:1463807/1‑149 (MQ=255)
                                                                                                                                ttatccgatccTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTAt                <  2:1181693/140‑1 (MQ=255)
                                                                                                                                 tATTCGCCCCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATg               <  2:751862/149‑1 (MQ=255)
                                                                                                                                  aTTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATgg              >  1:337710/1‑149 (MQ=255)
                                                                                                                                  aTTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAAGGTCATGGTATTGTTACGGTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATgg              >  2:1569356/1‑149 (MQ=255)
                                                                                                                                  aTTCGCACCTTCCCGAACTAATCGCTGCGTGGATTGTAAATCCAGCTAAGAGGTGAGGTTGTCAGAGCAGACAACGGCGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATgg              <  1:528514/149‑1 (MQ=255)
                                                                                                                                     cGCACCTCCCCTAACTAATCCATGCGTTGATTGTAAACCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGa           <  2:1419104/149‑1 (MQ=255)
                                                                                                                                      gCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTCACAAGAAATTTGTCTGCACAAGGATTACATCCTGATTATGGCGaa          >  2:753300/1‑149 (MQ=255)
                                                                                                                                      gCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGaa          >  1:605192/1‑149 (MQ=255)
                                                                                                                                        gccTTCCCTAACTAATCAATGCGTTGATTGTAAGTCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTAGGTTAAGGTATCAAGAAATTTGTTTGCACAAGGATTACATCATGATTATGGCGaaaa        >  2:508456/2‑148 (MQ=255)
                                                                                                                                         ccTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACt       >  1:1572093/1‑149 (MQ=255)
                                                                                                                                          cTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTGCATCATGATTATGGCGAAACTg      >  1:670083/1‑149 (MQ=255)
                                                                                                                                              ccTGACTAACCAATGCGTTGATTGTAAATCCAGCTAAGAGGTAATGGTTCCAGAGCAGACAACTGGGAAATTTCATTGTATTGTTACGTTTAGGTAACAAGAAATGAGTCTGCACAAGGTTTACATCATGATTATGGCTAAACTGAAGt  <  2:502163/149‑1 (MQ=255)
                                                                                                                                              ccTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACTGAAGt  >  1:1830409/1‑149 (MQ=255)
                                                                                                                                              |                                                                                                                                                    
CTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACTGAAGT  >  CP009273/1391353‑1391643

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.