New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 454255	3 (0.070)	37 (0.890)	31/288	0.4	92.7%	intergenic (+99/‑89)	clpX/lon	ATPase and specificity subunit of ClpX‑ClpP ATP‑dependent serine protease/DNA‑binding ATP‑dependent protease La
	?	CP009273	= 604803	NA (NA)					intergenic (+170/+112)	insL1/entD	IS186 transposase/phosphopantetheinyltransferase component of enterobactin synthase multienzyme complex

ATCTGGAGCTTACAGGTGGCCATTCGTGGGACAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTGCGGGCGAATCGTACCAGATGTTGTCAATTAATCGTGTTGGCACAGCGTTATGACTATCTTTTC  >  CP009273/604662‑604950                                                                                                                                              |                                                                                                                                                    aTCTAGAGCTTACAGGTGGCCATTCGTGGGACAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTa                                                                                                                                              >  1:655694/1‑149 (MQ=17)       aggtgaCAGGTGGCCATTCGTGGGACAGTATCCCTGACAGCCTAGAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTTGCGATTATGTTAGTAATcccc                                                                                                                                        <  2:600991/144‑1 (MQ=11)        gCTTACAGGTGGCCATTCGTGGGACAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCTCCg                                                                                                                                       <  2:297490/149‑1 (MQ=25)         cTTACAGGTGGCCATTCGTGGGACAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGc                                                                                                                                      <  1:45849/149‑1 (MQ=38)                gTGGCCATTCGTGGGACAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTGGCGCTTATGGGAGTAATCCCCGCATATCCg                                                                                                                               >  1:154914/1‑149 (MQ=255)                       ttCGTGGGACAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTgtca                                                                                                                        >  1:227467/1‑149 (MQ=255)                           tGGGACAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTgtccggtc                                                                                                                    >  1:565656/1‑149 (MQ=255)                                     tCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCAACCTCGTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTaa                                                                                                          >  1:511397/1‑149 (MQ=255)                                       ccTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAgg                                                                                                        <  2:254084/149‑1 (MQ=255)                                        cTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGc                                                                                                       <  2:227467/149‑1 (MQ=255)                                        cTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGGCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTGATCCCCGCATATCCGGGTGGACGGTCAGGCTGGTAAGGc                                                                                                       >  1:341557/1‑149 (MQ=17)                                        cTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGAGGCTGCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGAGGGTAAGGc                                                                                                       >  1:687013/1‑149 (MQ=18)                                         tGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCa                                                                                                      >  2:202061/1‑149 (MQ=255)                                             aGCCTACAAAGCGCAATTCAAGAACGCGGGGCATCGCCGGAACGAGGCACCGAGGCGTCACCTACTTAAGATGGTCCAACACCTAAGTTACGGCTTATGGGAGTAACCCCCGCATACCCGGTTGGCGGGTCAGGATCGTAAGGACCCTg                                                                                                  >  2:330495/1‑149 (MQ=12)                                                    aaaaCGCAATGGAAGAACCCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTaca                                                                                           <  2:630980/149‑1 (MQ=255)                                                        cGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGCATACGTGGCTTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACttt                                                                                       >  1:165844/1‑149 (MQ=25)                                                               gaagaaCGCGGGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATTCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGACCGt                                                                                <  2:512618/149‑1 (MQ=255)                                                                        gAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTgc                                                                       >  1:290336/1‑148 (MQ=255)                                                                                 tCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATACGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTGCgg                                                              >  2:248248/1‑149 (MQ=255)                                                                                  cTTAACGCGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTGCggg                                                             <  1:102100/149‑1 (MQ=255)                                                                                                 aGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTGCGGGCGAATCGTACCAGAt                                              >  1:178959/1‑149 (MQ=255)                                                                                                       cGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTGCGGGCGAATCGTACCCGATGGTGTc                                        <  2:565029/149‑1 (MQ=255)                                                                                                                       ttCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTGCGGGCGACTCGTACCAGATGTTGTCAATTAATCGTGTTGGc                        <  2:165844/149‑1 (MQ=255)                                                                                                                       ttCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTGCGGGCGAATCGTACCAGATGTTGTCAATTAATCGGGTTGGc                        >  2:536749/1‑149 (MQ=255)                                                                                                                            cccTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGACCGTGTTCAGTGATGGCTGCGGGCGCGTCGTACCTGATGTTGTCATTTATTCGTTTTGGCACAGc                   <  2:511397/149‑1 (MQ=255)                                                                                                                             ccTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCTGGTTGTGAGGTCAGGATGGTACGGCACCTGCTTTACACCTTCGCCGGTGGGCAGTGATGGCTGCAGGCGGATGGTACCGGTGCTTGTCCATTAATCGTGTTgtgacggcg                  >  2:79143/1‑141 (MQ=255)                                                                                                                             ccTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCACGATGGTAAGGCGCCTGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTGCGGGCGACTCGTACCAGATGTTGTCAATTAATCGTGTTGGCACAGct                  >  2:423510/1‑148 (MQ=255)                                                                                                                                    ttAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTGCGGGCGAATCGTACCAGATGTTGTCAATTAATCGTGTTGGCACAGCGTTATGAc           >  1:245813/1‑149 (MQ=255)                                                                                                                                    tgaGCGCTGATGGGAGTAAGCCCCGCTTATGCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTGCGGGCGAATCGTAGCAGATGCTGTCAATTAATCGTGTTGGCACAGCGTTATGAc           <  2:43712/147‑1 (MQ=255)                                                                                                                                      aGCGCTTATGGGAGTAATCCCCGCATATCCGGTAGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTGCGGGCGAATCGTACCAGATGTTGTCAATTAATCGTGTTGGCACCGCGTTATGACTa         >  1:73097/1‑149 (MQ=255)                                                                                                                                          cTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTGCGGGCGAATCGTACCAGATGTTGTCAATTAATCGTGTTGGCACAGCGTTATGACTAtctt     >  2:412968/1‑149 (MQ=255)                                                                                                                                           ttATGGGAGTAATCCCCGCATCTCCGGTTGTCAGGTCAGGATGGTCAGGCACCTGCTTTACACTTTCGCCAGTGGTCAGTGATGGCTGCGGGCGAATCATACCAGATGTTGGCAATTAATCGTGTTGGCACAGCGTTATGACTAtcttt    >  2:207236/1‑149 (MQ=255)                                                                                                                                           gtATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCGGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTGCGGGCGAATCGTACCAGATGTTGTCAATTAATCGTGTTGGCACAGCGTTATGACTAtcttt    <  2:614693/148‑1 (MQ=255)                                                                                                                                             aTGGGAGTAATCCCCGCATATCCGGTGGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTGCGGGCGAATCGTACCAGATGTTGTCAAGTAATCGTGTTGGCACAGCGTTATGACTAtcttttc  <  1:256795/149‑1 (MQ=255)                                                                                                                                              |                                                                                                                                                    ATCTGGAGCTTACAGGTGGCCATTCGTGGGACAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTGCGGGCGAATCGTACCAGATGTTGTCAATTAATCGTGTTGGCACAGCGTTATGACTATCTTTTC  >  CP009273/604662‑604950

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.