| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 683479 | NA (NA) | 6 (0.350) | 6/266 | NT | 36.1% | noncoding (1023/1195 nt) | IS5 | repeat region |
| ? | CP009273 | 684510 = | 11 (0.620) | intergenic (‑41/+289) | insH1/lnt | IS5 transposase and trans‑activator/apolipoprotein N‑acyltransferase | |||||
AAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATATTGCTGTTTTATTGTTTGTTTTTGCGAGATGCGCCGCACCATTCCGAAGCAAAATTCTTAAAATGCACTCTTTTAGTGCTACCGCTGGATTACTGTGG > CP009273/684363‑684634 | cttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgttatccccagtttttagtgagagctctcccactgacgtatCa < 2:38301‑M2/2‑1 (MQ=255) ttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttttcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccttttaattcgttatccccactttttagggacttccgacccaccgccgtatcga > 1:311600‑M2/147‑147 (MQ=255) ttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgcattgaatcagcctatttagaccgtttcttcgccatttaaggcgttatccccagtttttagtgagatctctccccctgacgtatCAt > 2:121102‑M2/147‑149 (MQ=255) aaTCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGTACGTAAGTTGATGACTCATGATGAACACTGGTCTATGGATCCAGATGACAAACATGATGTCATATCGGGGACTAGTTCGCACCTTCCTTAGGTAACAtt > 1:53068/1‑149 (MQ=11) ctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgttatccccagtttttagtgagatttctcccacttaggtatCAttt > 1:166960‑M2/145‑149 (MQ=255) aTCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTAACAttt < 2:95795/149‑1 (MQ=35) ctctTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGCTGACAAACAGGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTAACATTTAg < 2:138267/149‑1 (MQ=255) ttcatgtttgagccgattttttctcccgtaaatgccttgaatcatcctatttagaccgtttcttcgccatttaaggcggaatacccagtttttagtgaggtctatcccaaggacgtacCATTTAGTTTGGCTAAATGTAAAGAAATTGc > 1:150456‑M2/119‑149 (MQ=255) ttCACTGTCGGCGAAGGTAGGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATATTGCTGTTTTAtt > 2:123532/1‑149 (MQ=255) ttCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTAACATTTAGTTTGGCTAAATGTACAGATATTGCTGTTTTAtt > 2:123536/1‑149 (MQ=255) ttCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATATTGCTGTTTTAtt < 1:205830/149‑1 (MQ=255) ttCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATATTGCTGTTTTAtt < 2:160687/149‑1 (MQ=255) cGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATATTGCTGTTTTATTGTTTGTTTTTg > 2:186805/1‑149 (MQ=255) aatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgttatccccagtttttagtgagatctctcccactgacgtatCATTTAGTTTGGCTAAATGTAACGCTATTTCTGTTTTATTGTTTGTTTTTGCGAGATgcgc < 1:67673‑M2/61‑1 (MQ=255) ttgaatcagcctatttagaccgtttcttcgccatttaaggcgttatcccaagtatttattgagatctctcccacggacgtatGAGTTAGTTTGGCTAAATGTAGAGATATTGCTGTTTTATTGTTTGTTTTTGTGAGATGCGCCGCAcc > 2:184421‑M2/83‑149 (MQ=255) tCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATATTGCTGTTTTATTGTTTGTTTTTGCGTGATGCGCCGCACCAt > 1:268264/1‑149 (MQ=255) tcagcctatttagaccgtttcttcgccatttaaggcgttatccccagtttttagtgagatctctcccactgacgtatCATTTAGTTTGGCTAAATGTAAAGATATTGCTGTTTTATTGTTTGTTTTTTCGAGATGAGCCGCACCCTTcc > 1:50039‑M2/78‑149 (MQ=255) cagcctatttagaccgtttcttcgccatttaaggcgttatccccagtttttagtgagatctctcccactgacgtatCATTTAGTTTGGCTAAATGTAAAGATATTGCTGTTTTATTGTTTGTTTTTGCGAGATGCGCCGCACCATTCCg > 2:102837‑M2/77‑149 (MQ=255) gcctatttagaccgtttcttcgccatttaaggcgttatcgccagttttttgtgagatgtctcacacagacgcatCATTTAGTTTGGCTTTGTTTAAAGGTATTGCTGTTTTATTGTTTGTTTTTGCGAGATGCGCCGCACCATTCCGaa < 2:150456‑M2/75‑1 (MQ=255) tATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATATTGCTGTTTTATTGTTTGTTTTTGCGAGATGCGCCGCACCATTCCGAAGCAAAATTCTTa < 2:254364/149‑1 (MQ=255) aaCATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATATTGCTGTTTTATTGTTTGTTTTTGCGAGATGCGCCGCACCATTCCGAAGCAAAATTCTTAAAATGCACTCTTTTAGt < 2:264895/149‑1 (MQ=255) cAGGGACTTGTTCGCACCTTCCTTAGGTAACATTCAGTTTGGCTAACTGTAAAGATATTGCTGTTTTATTGTTTGTTTTTGCGAGATGCGCCGCACCATTCCGAAGCAAAATTCTTAAAATGCACTCTTTTAGTGCTACCGCTGGATTa < 2:92245/149‑1 (MQ=255) cTTGTTCGCACCTTCCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATATTGCTGTTTTATTGTTTGTTTTTGCGAGATGCGCCGCACCATTCCGAAGCAAAATTCTTAAAATGCACTCTTTTAGTGCTACCGCTGGATTACTgtgg < 2:10082/149‑1 (MQ=255) | AAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATATTGCTGTTTTATTGTTTGTTTTTGCGAGATGCGCCGCACCATTCCGAAGCAAAATTCTTAAAATGCACTCTTTTAGTGCTACCGCTGGATTACTGTGG > CP009273/684363‑684634 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |