| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 2269346 | 14 (0.790) | 13 (0.730) | 11/276 | NT | 48.1% | coding (595/1026 nt) | yejE | microcin C transporter YejABEF, permease subunit; ABC family |
| ? | CP009273 | 3576788 = | NA (NA) | intergenic (+10/‑55) | yrhA/insA | pseudogene, interrupted by IS1E/IS1 repressor TnpA | |||||
CTGACTCTCTGTTCCAGCGTGATGGGCGTGCTGGCGGGGGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGACAACGCTTTATTGAAGTATGGTCGGGGATGCCGACGCTGTTTTTGATTATTTTACTTTCCAGCGTCGTACAGCCTAACTTCTGGTGGCTGCTGGCAATTACTGTCTTGTTTGGCTGGATGAGTCTGGTCGGCGTGGTGCGGGCGGAGTTTTTACGTACTCGTAATTTCGACTACATTCGTGCGGCACAGGCGCTTGGCGTCAGCGATC > CP009273/2269199‑2269487 | cTGACTCTCTGTTCCAGCGTGATGGGCGTGCTGGCGGGGGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGACAACGCTGTATTGAAGTATGGTCGGGGATGCCGACGCTGTTTTTGATTATTTTACTTTCCAGcggcgt > 1:253565/1‑149 (MQ=255) tctctGTTCCAGCGTGATGGGCGTGCTGGCGGGGGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGACAACGCTTTATTGAAGTATGGTCGGGGGTGCCGACGCTGTTTTTGGTTATTTTACTTTCCAGCGTCGTACAGc > 2:185170/1‑149 (MQ=255) tctctGTTCCAGCGTGATGGGCGTGCTGGCGGGGGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGACAACGCTTTATTGAAGTATGGTCGGGGATGCCGACGCTGTTTTTGATTATTTTACTTTCCAGCGTCGTACAGc > 2:37479/1‑149 (MQ=255) ttCCAGCGTGATGGGCGTGCTGGCGGGGGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGACAACGCTTTATTGAAGTATGGTCGGGGATGCCGACGCTGTTTTTGATTATTTTACTTTCCAGCGTCGggtgatgctgcc > 2:131233‑M1/1‑137 (MQ=255) ttCCAGCGTGATGGGCGTGCTGGCGGGGGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGACAACGCTTTATTGAAGTATGGTCGGGGATGCCGACGCTGTTTTTGATTATTTTACTTTCCAGCGTCGggtgatgctgcc > 1:245302‑M1/1‑137 (MQ=255) agagTGACGGGCGTGCTGGCGGGGGCGCGAGAAGGCTATTACGGCGGTGAAGTCGATCGCTGGGGACAACGCGTTATTGAAGGATGGTCGGGGATGCCTACGCTGTTTTTGATTATTTTACTTTCCGGGGGCGTACAGCCTAACTTCtg > 1:207370/4‑149 (MQ=255) aGCGTGATGGGCGTGCCGGCGGGGGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGACAACGCTTTATTGAAGTATGGTCGGGGATGCCGACGCTGTTTTTGATTATTTTACTTTCCAGCGTCGggtgatgctgccaact < 2:97648‑M1/149‑17 (MQ=255) cGTGATGGGCGTGCTGGCGGGGGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGACAACGCTTTATTGGAGTATGGTCGGGGATGCGGACGCTGTTTTTGATTATTTTACTTTCCAGAGGCGggtggtgctgccaactta > 2:21941‑M1/1‑131 (MQ=255) gTGATGGGCGTGCTGGCGGGGGCGCTACAAGGCTAGTACGGCGGTAAAGTCGATCTCTGGGGACAACGCTTTATTGAAGTATGGTCGGGGATGCCGACGCTGTTTTTGATTATTTTACTTTCCGGCGTCGTACAGCCTAACTTCtggtg < 2:156548/149‑1 (MQ=255) tggcacctggcacggctgggacggaagtcgcttttgttctcaaaatcggtggagctgcatgacaaagccatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCCAGCGTCGTACAGCCTAACTTCtgttgg > 1:207656‑M1/121‑149 (MQ=255) gATGGGCGTGCTGGCGGGGGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGACAACGCTTTATTGAAGTATGGTCGGGGATGCCGACGCTGTTTTTGATTATTTTACTTTCCAGCGTCGggtgatgctgccaacttactg > 2:66745‑M1/1‑128 (MQ=255) ggctgggccggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCCAGCGTCGTACAGCCTAACTTCTGGTGGCTGCTGGCAATTa > 1:97969‑M1/108‑149 (MQ=255) ggCGGGGGCGCTACAAGGCTATTACAGCGGTAAAGTCGATCTCTGGGGACAACGCTTTATTGAAGTATGGTCGGGGATGCCGACGCTGTTTTTGATTATTTTACTTTCCAGCGTCGggtgatgctgccgacttactgatttagtgtatg > 1:157598‑M1/1‑116 (MQ=255) gcTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGACAACGCTTACTTGAAGTATGGTCGGGGATGCCGACGCTGTTTTGTGTTATTTTAATTTCCAGCGACGTACAGCCTAACTTCTCGTGGCTGATGGACATTACTACCTTGt > 1:129667/1‑149 (MQ=255) gCTATTACGGCGGTAAAGTCGATCTCTGGGGACAACGCTTTATTGAAGTATGGTCGGGGATGCCGGCGCTGTTTTTGATTATTTTACTTTCCAGCGTCGTACAGCCCAACTTCTGGTGGCTGCTGGCAATTACTGTCTCGTTTGCCTgg > 1:46831/1‑149 (MQ=255) gCTATTACGGCGGTAAAGTCGATCTCTGGGGACAACGCTTTATTGAAGTATGGTCGGGGATGCCGACGCTGTTTTTGATTATTTTACTTTCCAGCGTCGTACAGCCTAACTTCTGGTGGCTGCTGGCACTTACTGTCTTTTTTGGCTgg > 1:116348/1‑149 (MQ=255) gTCGATCTCTGGGGACAACGCTTTATTGAAGTATGGTCGGGGATGCCGACGCTGTTTTTGATTATTTTACTTTCCAGCGTCGTACAGCCTAACTTCTGGTGGCTGCTGGCAATTACTGTCTTGTTTGGCTGGATGAGTCTGGTCGGCgt > 2:17246/1‑149 (MQ=255) gTCGATCTCTGGGGACAACGCTTTATTGAAGTATGGTCGGGGATGCCGACGCTGTTTTTGATTATTTTACTTTCCAGCGTCGTACAGCCTAACTTCTGGTGGCTGCTGGCAAGTGCTGTCTTGTTTGGCTGGATCACTCTGGGCGGGgt > 1:267975/1‑149 (MQ=255) aaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCCAGCGTCGTACAGCCTAACTTCTGGTGGCTGCTGGCAATTACTGTCTTGTTTGGCTGGATGAGTCTGGTCAGCGTGGTGCGGGCGGAGttt < 1:70910‑M1/92‑1 (MQ=255) aaCGCTTTATTGAAGTATGGTCGGGGATGCCGACGCTGTTTTTGATTATTTTACTTTCCAGCGTCGggtgatgctgccaacttactgatctagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccct > 1:223948‑M1/1‑66 (MQ=255) cTTTATTGAAGTATGGTCGGGGATGCCGACGCTGTTTTTGATTATTTTACTTTCCAGCGTCGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctg < 1:66745‑M1/149‑88 (MQ=255) tATTGAAGTGTGGTCGGGGATGCCGACGCTGTTTTTGATTATTTTACTTTCCAGCGTCGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttc < 1:134701‑M1/149‑91 (MQ=255) ctgaacataaaacactatcaataagttggagtccttaccCCAGCGTCGTACAGCCTAACTTCTGGTGGCTGCTGGCAATTACTGTCTTGTTTGGCTGGATGAGTCTGGTCGGCGTGGTGCGGGCGGAGTTTTTACGTACTCGTAATTTc < 2:228004‑M1/110‑1 (MQ=255) gATGCCGACGCTGTTTTTGATTATTTTACTTTCCAGCGTCGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtgtctatcagctgtccctcctgttcagctactgacggggtggt > 2:294784‑M1/1‑41 (MQ=255) tGCCGAAGCTGTTTTTGATTATTTTACTTTCCAGCGTCGTACAGCCTAACTTCTGGTGGCTGCTGGCAATTACTGTCTTGTTTGGCTGGATGAGTCTGGTCGGCGTGGTGCGGGCGGAGTTTTTACGTACTCGTAATTTCGACtccctt > 1:37771/1‑144 (MQ=255) actataaataagctgcaggcattaccCCAGCGTCGTACAGCCTAACTTCTGGTGGCTGCTGGCAATTACTGTCTTGTTTGGCTGGATGAGTCTGGTCGGCGTGGTGCGGGCGGAGTTTTTACGTACTCGTAATTTCGACTACATTCGTg < 1:115128‑M1/123‑1 (MQ=255) cGCTGTTTTTGATTATTTTACTTTCCAGCGTCGTACAGCCTAACTTCTGGTGGCTGCTGGCAATTACTGTCTTGTTTGGCTGGATGAGTCTGGTCGGCGTGGTGCGGGCGGAGTTTTTACGTACTCGTAATTTCGACTACATTCGTGCg < 2:205596/149‑1 (MQ=255) tGTTTTTGATTATTTTACTTTCCAGCGTCGTACAGCCTAACTTCTGGTGGCTGCTGGCACTTACTGTCTTGTTTGGCTGGCTGGGTCTGGTCGGCGTGGGGCGGGCGGGGGTTGTACGGACTCTTCATTTCGACTACCTTCGGGCCGcc > 1:107750/1‑148 (MQ=255) tttttGATTATTTTACTTTCCAGCGTCGgatgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtatttatcagctgtccctcctgttcagctactgccgtgatggttggtgacgacata > 1:171394‑M1/1‑28 (MQ=255) ttttACTTTCCAGCGTCGTACAGCCTAACTTCTGGTGGCTGCTGGCAATTACTGTCTTGTTTGGCTGGATGAGTCTGGTCGGCGTGGTGCGGGCGGAGTTTTTACGTACTCGTAATTTCGACTACATTCGTGCGGCACAGGCGCTTGGc > 2:120393/1‑149 (MQ=255) tttACTTTCCAGCGTCGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgccgg < 2:245302‑M1/149‑133 (MQ=255) tttCCAGCGTCGTACAGCCTAACTTCTGGTGGCTGCTGGCAATTACTGTCTTGTTTGGCTGGATGAGTCTGGTCGGCGTGGTGCGGGCGTAGTTTTTACGTACTCGTAATTTCGACTACATTCGTGCGGCACAGGCGCTTGGCGTCAGc < 2:207370/149‑1 (MQ=255) ccCCAGCGTCGTACAGCCTAACTTCTGGTGGCTGCTGGCAATTACTGTCTTGTTTGACTGGATGAGTCTGGTCGGCGTGGTGCGGGCGGTGTTTTTGCGTACTCGTAGTTTCGACTACATTCGTGCGGCACAGGCGCTTGGCGTCAGCg < 1:194837‑M1/147‑1 (MQ=255) cCCAGCGTCGGCGAGCCTAACTTGTGGTGGCTGCTGGCAATTGCTGTCTTGTTTGGCTGGATGAGTCTGGTCGGCGTGGTGCGGGCGGAGTTTTTACGTACTCGTAATGTCGACTACATTCGTGCGGCACAGGCGCTTGGCGTCAGCGa > 1:117472‑M1/2‑149 (MQ=255) cAGCGTCGggtgatgctgcctacttactgatttagtgtctgatggtgttcttgaggtgctccagtggcgtctgtttctatcagctgtccctcctcttcagctactgacggggtggtgcgtaacggcaaaagcaccgccggacatcaccg < 1:21941‑M1/149‑142 (MQ=255) | CTGACTCTCTGTTCCAGCGTGATGGGCGTGCTGGCGGGGGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGACAACGCTTTATTGAAGTATGGTCGGGGATGCCGACGCTGTTTTTGATTATTTTACTTTCCAGCGTCGTACAGCCTAACTTCTGGTGGCTGCTGGCAATTACTGTCTTGTTTGGCTGGATGAGTCTGGTCGGCGTGGTGCGGGCGGAGTTTTTACGTACTCGTAATTTCGACTACATTCGTGCGGCACAGGCGCTTGGCGTCAGCGATC > CP009273/2269199‑2269487 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |