New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 1046001	48 (1.070)	29 (0.640)	23/296	1.2	53.2%	intergenic (+15/+418)	insB1/cspH	IS1 transposase B/stress protein, member of the CspA‑family
	?	CP009273	2269338 =	3 (0.070)					coding (587/1026 nt)	yejE	microcin C transporter YejABEF, permease subunit; ABC family

AGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/1045879‑1046001 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCAGCGTCGTACAGCCTAACTTCTGGTGGCTGCTGGCAATTACTGTCTTGTTTGGCTGGATGAGTCTGGTCGGCGTGGTGCGGGCGGAGTTTTTACGTACTCGTAATTTCGACTACATTCGTGCGGCACAGGCGCTTGGCGTCAGCGA  >  CP009273/2269338‑2269485                                                                                                                                                                                                                                                                                 AGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCCAGCGTCGTCCAGCCTAACTTCTGG                                                                                                                            >  2:657405/1‑149       CACCTGGCACGGCTGGGACGGAAGACGCTGTCGTACTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCCAGCGTCGTACAGCCTAACTTCTGGTGGCTG                                                                                                                      >  1:371848/1‑149          CTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCCAGCGTCGTACAGCCTAACTTCTGGTGGCTGCTG                                                                                                                   <  2:599177/149‑1           TGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCCAGCGTCGTAAAGCCTAACTTCTGGTGGCTGCTGc                                                                                                                  >  2:669950/1‑148               ACGCCTGCGACGCAAGCCGCTGGCGTTCTCAAAATCGGTGGAGCCGAATGACAAAGTCACCGGGCATTATCTGCACATACAACACTATCAATAAGTTGGAGTCATTACCCCAGCGTCGTACAGCCTAACTTCTGGTGGCTGCTGGCAgt                                                                                                              <  1:474515/149‑3                     GGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCCAGCGTCGTACAGCCTAACTTCTGGTGGCTGCTGGCAATTACTGT                                                                                                        >  1:661419/1‑149                                cgccggCGTTCCCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCCAGCGTCGTACAGCCTAACTTCTGGTGGCTGCTGGCAATTACTGTCTTGTTTGGCT                                                                                             <  1:233324/143‑1                                      ctTTCTCAAAAGCGGTGGAGCTGCAGGACAAAGTCATCGGTCATTATGTGAACATTACACTCTATCAATAAGTTGGAGTCATTGTCTCAGCGTCGTACTGCCTAAGTTCTGGTGGCTGCTGGCAATTACTGTCTTGTTTGGCTGGATGA                                                                                       <  2:203374/147‑1                                      CGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCCAGCGTCGTACAGCCTAACTTCTGGTGGCTGCTGGCAATTACTGTCTTGTTTGGCTGGATGA                                                                                       <  1:88903/149‑1                                      CGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCCAGCGTCGTACAGCCTAACTTCTGGTGGCTGCTGGCAATTACTGTCTTGTTTGGCTGGATGA                                                                                       <  1:88636/149‑1                                           TCAAACTCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCCAGCGTCGTACAGCCTAACTTCTGGTGGCTGCTGGCAATTACTGTCTTGTTTGGCTGGATGAGTCTG                                                                                  <  2:60581/149‑1                                               AATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCCAGCGTCGTACAGCCTAACTTCTGGTGGCTGCTGGCAATTACTGTCCTGGTTTTCTGCGTGAGTCTGGTCG                                                                              >  1:682489/1‑149                                                    GTGGAGCTGCATGACAAAGTCATCGTGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCCAGCGTCGTACAGCCTAACTTCTGG                                                                                                                            <  1:718049/98‑1                                                    GTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCCAGCGTCGTACAGCCTAACTTCTGG                                                                                                                            >  2:718049/1‑98                                                       GAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCCAGCGTCGTACAGCCTAACTTCTGTTCGCTTCTTGCTTTTACTGTCTTGTTTGGCTGGATGAGTCTGGTCGGCGTGGTG                                                                      >  1:606359/1‑149                                                            GCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCCAGCGTCGTTCAGCCCAACGTCTGGTGGCTGCTGGCAATTACTGTCTTGTTTGGCTGGATGAGTCTGGTCGGCGTGGTGCGGGC                                                                 >  1:2805/1‑149                                                                GACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCCAGCGTCGTACAGCCTAACTTCTGGTGGCTGCTGGCAATTACTGTCTTGTTTGGCTGGATGAGTCTGGTCGGCGTGGTGCGGGCGGAG                                                             <  1:28498/149‑1                                                                  CAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCCAGCGTCGTACAGCCTAACTTCTGGTGGCTGCTGGCAATTACTGTCTTGTTTGGCTGGATGAGTCTGGTCGGCGTGGTGCGGGCGGAGTT                                                           >  2:173653/1‑149                                                                  CAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCCAGCGTCGTACAGCCTAACTCCTGGTGGCTGCGGGGCATTACTGTCTTGTTAGGCGGGCTGGGTTTGGTCGGCGTGGTGCGGGCGGAGTT                                                           >  2:660996/1‑149                                                                   AAAGTCATCGGGCATTGTCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCCAGCGTCGTACAGCCTAACTTCTGGTGGCTGCTGGCAATTACTGTCTTGTTTGGCTGGATGAGTCTGGTCGGCGCGGGGCGGGCGGAGTTT                                                          >  1:460743/1‑149                                                                      ggCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCCAGCGTCGTACAGCCTAACTTCTGGTGGCTGCTGGCAATTACTGTCTTGTTTGGCTGGATGAGTCTGGTCGGCGTGGTGCGGGCGGAGTTTTTA                                                       <  1:27281/147‑1                                                                      GTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCCAGCGTCGTACAGCCTAACTTCTGGTGGCTGCTGGCAATTACTGTCTTGTTTGGCTGGATGAGTCTGGTCGGCGTGGTGCGGGCGGAGTTTTTA                                                       <  1:77588/149‑1                                                                             GGCATTACCTGGACATAAAACACTATCATTAAGTTGGTGTGCTTACCCCAGCGTCGTTCAGCCTAACTTCTGGTGGCTGTTGGCAATTACTGTCTTGTTTGGCTGGATGAGTCTGGTCGTCGTGGTGCGGGCGGAGTTTTTACGTACTC                                                <  2:14844/149‑1                                                                                ATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCCAGCGTCGTACAGCCTAACTTCTGGTGGCTGCTGGCAATTACTGTCTTGTTTGGCTGGATGAGTCTGGTCGGCGTGGTGCGGGCGGAGTTTTTACGTACTCGTA                                             >  1:699172/1‑149                                                                                     aagcACATGAAACACTATCAATAAGTTGGAGTCATTACCCCAGCGTCGTACAGCCTAACTTCTGGTGGCTGCTGGCAATTACTGTCTTGTTTGGCTGGATGAGTCTGGTCGGCGTGGTGCGGGCGGAGTTTTTACGTACTCGTAATTTC                                        >  2:558219/5‑149                                                                                       GAACATAAAACACTATCAAGAAGTTGGAGTCATTACCCCAGCGTCGTACAGCCTAACTTCTGGGGGCTGCTGGCAATTACTGTCTTGTTTGGCTGGATGAGTCTGGTCGGCGTGGTGCGGGCGGAGTTTTTACGTACTCGTAATTTCGA                                      <  1:27467/149‑1                                                                                                                 GAGTCATTACCCCAGCGTCGTACAGCCTAACTTCTGGTGGCTGCTGGCAATTACTGTCTTGTTTGGCTGGATGAGTCTGGTCGGCGTGGTGCGGGCGGAGTTTTTACGTACTCGTAATTTCGACTACATTCGTGCGGCACAGGCGCTTG            <  1:328651/149‑1                                                                                                                    TCATTACCCCAGCGTCGTACAGCCTAACTTCTGGTGGCTGCTGGCAATTCCTGTCTTGTTTGGCTGGATGAGTCTGGTCGGCGTGGTGCGGGCGGAGTTTTTACGTACTGGTAATTTCGACTAGATTCGTGCGGTACAGGCGCTTGGCG         >  2:660162/1‑149                                                                                                                           CCCAGCGTCGTACAGCCTAACTTCTGGTGGCTGCTGGCAATTACTGTCTTGTTTGGCTGGATGAGTCTGGTCGGCGTGGTGCGGGCGGAGTTTTTACGTACTCGTAATTTCGACTACATTCGTGCGGCACAGGCGCTTGGCGTCAGCGA  <  1:632734/149‑1                                                                                                                                                                                                                                                                                 AGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/1045879‑1046001 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCAGCGTCGTACAGCCTAACTTCTGGTGGCTGCTGGCAATTACTGTCTTGTTTGGCTGGATGAGTCTGGTCGGCGTGGTGCGGGCGGAGTTTTTACGTACTCGTAATTTCGACTACATTCGTGCGGCACAGGCGCTTGGCGTCAGCGA  >  CP009273/2269338‑2269485

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.