New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 287112	NA (NA)	46 (1.020)	34/296	0.4	100%	noncoding (1/768 nt)	IS1	repeat region
	?	CP009273	= 2269346	0 (0.000)					coding (595/1026 nt)	yejE	microcin C transporter YejABEF, permease subunit; ABC family

GATAGCGCTGATGTCCGGCAGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/286967‑287112 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGACGCTGGAAAGTAAAATAATCAAAAACAGCGTCGGCATCCCCGACCATACTTCAATAAAGCGTTGTCCCCAGAGATCGACTTTACCGCCGTAATAGCCTTGTAGCGCCCCCGCCAGCACGCCCATCACGCTGGAACAGAGAGT  <  CP009273/2269346‑2269202                                                                                                                                                                                                                                                                                                     GATAGCGCTGATGTCCGGCAGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACCGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCGA                                                                                                                                                <  2:668449/149‑1    AGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAACACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCGACGC                                                                                                                                             <  1:28019/149‑1        CTGCTGTCCGGCGGTGCCTGTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGTACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACGCCATGTCTGTAAGTTGGCAGCATCACCCGACGCTGGA                                                                                                                                         <  1:728618/149‑1         TGATGTCCGGCGGTGCTTTTACCGTTACGCACCACCCCGTCAGGAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCGACGCTGGAA                                                                                                                                        <  1:603562/149‑1                  gccGTGCTTTTGCCGTTACGCACCACCCCGTCAATAGCTGAACAGGAGGGACAGCTGATACAAACACAAGCCACTCGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGTCAGCATCACCCGACGCTGGAAAGTAAAATA                                                                                                                               <  2:263756/146‑1                   cgGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAACCAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTACGTTGGCAGCATCACCCGGCGCGAGAACGGAAAAaac                                                                                                                              >  2:213189/3‑146                     GTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCGACGCTGGCAGGTAAAAAAATC                                                                                                                            >  2:127827/1‑149                      TGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAACCAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCCTCACCCGACGCTGGAAAGTAACATAATCA                                                                                                                           >  2:139131/1‑149                                 TTACGCACCACCCCGTCAGTAGCTGAACAGGAGGAACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCGACGCTGGAAAGTAAAATAATCAAAAACAGCGTC                                                                                                                >  2:198566/1‑149                                    CGCACCACCCCGTCAGTATCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCGACGCTGGAAAGTAAAATAATCAAAAACAGCGTCGGC                                                                                                             <  1:10871/149‑1                                    CGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCGACGCTGGAAAGTAAAATAATCAAAAACAGCGTCGGC                                                                                                             <  1:434609/149‑1                                             CCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAACCACCATCATACCCTAAATCAGTAAGTTGGCAGCATCACCCGACGCTGGAAAGTAAAATAATCAAAAACAGCGTCGGCATCCCCGAC                                                                                                    <  1:619978/149‑1                                                  AGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCGACGCTGGAAAGTAAAATAATCAAAAACAGCGTCGGCATCCCCGACCATAC                                                                                               >  2:104248/1‑149                                                    TAGCTGAACAGGAGGGACAGCGGATATAAACAGAAGCCACTGGGGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCGACGCTGGAAAGTAAGATAATAAAAAACCGCGTCGGCATCCCGCACCATACTT                                                                                             >  2:359591/1‑149                                                        TGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCGACGCTGGAAAGTAAAATAATCAAAAACAGCGTGGGCCTCCCCGACCATACTTCAAT                                                                                         >  2:16713/1‑149                                                        TGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCGACGCTGGAAAGTAAAATAATCAAAAACAGCGTCGGCAGCCCCGCCCACACTTCAAT                                                                                         >  2:492436/1‑149                                                              GGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCGACGCTGGAAAGTAAAATAATCAAAAACAGCGTCGGCATCCCCGACCATACTTCAATAAAGCG                                                                                   >  1:317227/1‑149                                                               GAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCGACGCTGGAAAGTAAAATAATCAAAAACAGCGTCGGCATCCCCGACCATACTTCACTAAAGCGT                                                                                  >  1:434230/1‑149                                                                AGGGACAGCTGAGAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCACCATACACTAAATCAGTAAGTTGGCAGCATCACCCGACGCTGGAAAGTAAAATAATCAAAAACAGCGTCGGCATCCCCGACCATACTTCAATAAAGCGTT                                                                                 <  2:504296/149‑1                                                                       GCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCGACGCTGGAAAGTAAAATAATCAAAAACAGCGTCGGCATCCCCGACCATACTTCAATAAAGCGTTGTCCCCA                                                                          <  2:707737/149‑1                                                                           ATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCGACGCTGGAAAGTAAAATAATCAAAAACAGCGTCGGCATCCCCGACCATACTTCAATAAAGCGTTGTCCCCAGAGA                                                                      >  1:129856/1‑149                                                                            TAGAAACAGAAGCCACTGGAGCACCTCACAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCGACGCTGGAAAGTAAAATAATCAAAAACAGCGTCGGCATCCCCGACCATACTTCAATAAAGCGTTGTCCCCAGAGAT                                                                     <  1:685304/149‑1                                                                                       GCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCGACGCTGGGAAGTAAGATAATCAAAAACAGCGTCGGCATCCCCGACCATACTTCACTAAAGCGGTGTCCCCAGAGATCGACCTTACCG                                                          >  2:223417/1‑149                                                                                          ACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCGACGCTGGAAAGTAAAATAATCAAAAACAGCGTCGGCATCCCCGACCATACTTCAATAAAGCGTTGTCCCCAGAGATCGACTTTACCGCCG                                                       >  1:583537/1‑149                                                                                          ACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCGACGCTGGAAAGTAAAATAATCAAAAACAGCGTCGGCATCCCCGACCATACTTCAATAAAGCGTTGTCCCCAGAGAGCGACTTTACCGCCG                                                       >  1:304527/1‑149                                                                                            TGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCGACGCTGGAAAGTAAAATAATCAAAGACGGCGTTGGCATCCCCGACCATACTTACCTAAAGCGTTGTCCCCAGAGATCGACTTTACCGCCGTA                                                     <  1:689712/149‑1                                                                                              GAGCACCTCAAAAACACCATCCTACACTTAATCAGTAAGTTGGCAGCATCACCCGACGCTGGAAAGTAAAATCATCAACCACAGCGTTGGCAGCCCCGACCATACTTCAATAAAGCGTTGTCCCCAGAGATCGACTTTACCGCCGTAAT                                                   <  2:591543/149‑1                                                                                                  ACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCGACGCTGGAAAGTAAAATAATCAAAAACAGCGTCGGCATCCCCGACCATACTTCAATAAAGCGTTGTCCCCAGAGATCGACTTTACCGCCGTAATAGCC                                               >  1:214446/1‑149                                                                                                    CTCAAAAACACCATCATACACTAAATCAGTACGTTGGCAGCATCACCCGACGCTGGAAAGTAAAATAATCAAAAACAGCGTCGGCATCCCCGACCATACTTCAATAAAGCGTTGTCCCCAGAGATCGACTTTACCGCCGTAATAGCCTT                                             <  1:198566/149‑1                                                                                                    CTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCGACGCTGGAAAGTAAAATAATCAAAAACAGCGTCGGCATCCCCGACCATACTTCAATAAAGCGTTGTCCCCAGAGATCGACTTTACCGCCGTAATAGCCTT                                             >  1:634884/1‑149                                                                                                       AAAAACCCCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCGACGCTGGAAAGTAAAATAATCAAAAACAGCGTCGGCATCCCCGACCATACTTCAATAAAGCGTTGTCCCCAGAGATCGACTTTACCGCCGTAATAGCCTTGTA                                          <  2:349585/149‑1                                                                                                         AAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCGACGCTGGAAAGTAAAATAATCAAAAACAGCGTCGGCATCCCCGACCATACTTCAATAAAGCGTTGTCCCCAGAGATCGACTTTACCGCCGTAATAGCCTTGTAGC                                        <  1:73312/149‑1                                                                                                               CATCATACACTAAATCAGTAAGTTGGCAGCATCACCCGACGCTGGACCGTGACATAATCCACAACAGCGGCGGCACCCCCGATCATACTTCGATTAGTCGTTGTCCCCAGAGATCGACTTTACCGCCGTAATAGCCTTGTAGCGCCCCC                                  >  1:147531/1‑149                                                                                                               CATCATACACTAAATCAGTAAGTTGGCAGCATCACCCGACGCTGGAAAGTAAAATAATCAAGAACAGCGTCGGCATCCCCGACCATACTTCAATAAAGCGTTGTCCCCAGAGATCGACTTTACCGCCGTAATACCCTTGTAGCGCCCCC                                  >  2:292239/1‑149                                                                                                               CATCATACACTAAATCAGTAAGTTGGCAGCATCACCCGACGCTGGAAAGTAAAATAATCAAAAACAGCGTCGGCATCCCCGACCATACTTCAATAAAGCGTTGTCCCCAGAGATCGACTTTACCGCCGTAATAGCCTTGTAGCGCCCCC                                  >  2:104884/1‑149                                                                                                               CATCATACACTAAATCAGTAAGTTGGCAGCATCACCCGACGCTGGAAAGTAAAATAATCAAAAACAGCGTCGGCATCCCCGACCATACTTCAATAAAGCGTTGTCCCCAGAGATCGACTTTACCGCCGTAATAGCCTTGTAGCGCCCCC                                  >  1:677694/1‑149                                                                                                                              CAGTAAGTTGGCAGCATCCCCCGACGCTGGAAAGTAAAATAATCAAAAACAGCGTCGGCATCCCCGACCATACTTCAATAAAGCGTTGTCCCCAGAGATCGACTTTACCGCCGTAATAGCCTTGTAGCGCCCCCGCCAGCACGCCCATC                   <  1:52933/149‑1                                                                                                                                  AAGTTGGCAGCATCACCCGACGCTGGAAAGTAAAATAATCAAAAACAGCGTCGGCATCCCCGACCATACTTCAATAAAGCGTTGTCCCCAGAGATCGACTTTACCGCCGTAATAGCCTTGTAGCGCCCCCGCCAGCACGCCCATCACGC               >  1:357815/1‑149                                                                                                                                   AGTTGGCAGCAGCACCCGACGCTGGAAAGTAAAATAATCAAAAACCGCGTCGGCATCCCCGACCATACTTCAATAAAGCGTTGTCCCCAGAGATCGACTTTCCCGCCGTAATAGCCTTGTAGCGCCCCCGCCAGCACGCCCATCACGCT              <  1:474705/149‑1                                                                                                                                    GTTGGCAGCATCACCCGACGCTGGAAAGTAAAATAATCAAAAACAGCGTCGGCATCCCCGACCATACTTCAATAAAGCGTTGTCCCCAGAGATCGACTTTACCGCCGTAATAGCCTTGTAGCGCCCCCGCCAGCACGCCCAACACGCTG             >  2:141913/1‑149                                                                                                                                     TTGGCAGCATCACCCGCCGCTGGAAAGTAAAATAATCAAAAACAGCGTCGGCATCCCCGACCATACTTCAATAAAGCGTTGTCCCCAGAGATCGGCTTTACCGCCGTAGTAGCCTTGTAGCGCCCCCGCCAGCACGCCCATCACGCTGG            >  2:423190/1‑149                                                                                                                                      tgtCAGCCTCACCCGCCGCTGGAAAGCAACATAATCCAAAACAGCGTCGGCATCCCCGACCATACTTCAATAAAGCGTTGTCCCCAGAGATCGACTTTACCGCCGTAATAGCCTTGTAGCGCCCCCGCCAGCACGCCCATCACGCTGGA           <  2:154440/146‑1                                                                                                                                       GGCAGCCACCCCCGGCGCTGGAAATTAAAATAACCAAAAACCGCGTCGGCATCGCCGACCATCCTTCAATCAAGCGTTGTCCCCAGAGATCGACTTTACCGCCGTAATAGCCTTGTAGCGCCCCCGCCAGCACGCCCATCACGCTGGAA          <  2:207705/149‑1                                                                                                                                       GGCAGCATCACCCGACGCTGGAAAGTAAAATAATCAAAAACAGCGTCGGCATCCCCGACCATACTTCAATAAAGCGTTGTCCCCAGAGATCGACTTTACCGCCGTAATAGCCTTGTAGCGCCCCCGCCAGCACGCCCATCACGCTGGAA          <  1:104248/149‑1                                                                                                                                       GGCAGCAGCACCCGACGCAGGAAAATAAAATAATCAAAAACAGCGTCGGCATCCCCGACCATACTTCAATAAAGCGTGGTCACCAGAGATCAACTTTACCGCCGTAATAGCCTTGTAGCGCCCCCGCCAGCACGCCCATCACGCTGGAA          <  1:555846/149‑1                                                                                                                                               CACCCGACGCTGGAAAGTAAAATAATCAAAAACAGCGTCGGCATCCCCGACCATACTTCAATAAAGCGTTGTCCCCAGAGATCGACTTTACCGCCGTAATAGCCTTGTAGCGCCCCCGCCAGCACGCCCATCACGCTGGAACAGAGAGT  <  2:317227/149‑1                                                                                                                                                                                                                                                                                                     GATAGCGCTGATGTCCGGCAGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/286967‑287112 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGACGCTGGAAAGTAAAATAATCAAAAACAGCGTCGGCATCCCCGACCATACTTCAATAAAGCGTTGTCCCCAGAGATCGACTTTACCGCCGTAATAGCCTTGTAGCGCCCCCGCCAGCACGCCCATCACGCTGGAACAGAGAGT  <  CP009273/2269346‑2269202

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.