Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
JC	CP009273	4,108,819:1	+TGT	5.4%	coding (440/486 nt)	rraA ←	ribonuclease E (RNase E) inhibitor protein

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 4108815	51 (1.060)	3 (0.060) +TTG	3/262	NT	5.4%	coding (444/486 nt)	rraA	ribonuclease E (RNase E) inhibitor protein
	?	CP009273	4108816 =	55 (1.110)					coding (443/486 nt)	rraA	ribonuclease E (RNase E) inhibitor protein

CATGGAAGAGGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACTGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCTTTCTTATCATTCAATATCCAGCGGATCTTCTGAAAGAATAATCCCGGTATTGTCGGCATAAAGATGGTCGCCGGAGAAGAAGGTGACACCGCCAAAATTGACGCGGACATCGCTTTCGCCAATGCCTTCGCCAGCGGCACCAACCGGAATTGCCGCCATCGCCTGGATGCCGATATCCAACTCTTCCAGGTCATCTA  >  CP009273/4108673‑4108963                                                                                                                                                |                                                                                                                                                    cATGGAAGAGGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACTGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCTTTCTTATCATTCAATATCCAGCGGATCTTCTGAAAGAATAATCCCGGTATTGTCg                                                                                                                                                >  2:310883/1‑149 (MQ=255)   tGGAAGAGGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACTGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCTTTCTTATCATTCAATATCCAGCGGATCTTCTGAAAGAATAATCCCGGTATTGTCGGc                                                                                                                                              <  2:843718/149‑1 (MQ=255)   tGGAAGAGGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACTGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCTTTCTTATCATTCAATATCCAGCGGATCTTCTGAAAGAATAATCCCGGTATTGTCGGc                                                                                                                                              >  2:559231/1‑149 (MQ=255)           gTCTGATTACGCTTCATCTTCCGCGTCATTTGTTTTGTTGGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCTTTCTTATCATTCAATATCCAGCGGATCTTCTGAAAGAATAATCCCGGTATTTTCGGCATAAAAAt                                                                                                                                      >  1:188614/1‑149 (MQ=255)           gTCTGATTACGCGTCATCTTCCGCGTAATTTCTTTACTGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCTTTCTTATCATTCAATATCCAGCGGATCTTCTGAAAGAATAATCCCGGTATTGTCGGCATAAAGAt                                                                                                                                      >  1:751482/1‑149 (MQ=255)              tGATTACGCTTCATCTTCCGCGTAATTTCTTTACTGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCTTTCTTATCATTCAATATCCAGCGGATCTTCTGAAAGAATAATCCCGGTATTGTCGGCATAAAGATGGt                                                                                                                                   >  1:161266/1‑149 (MQ=255)                 ttACGCTTCATCTTCCGCGTAATTTCTTTACTGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCTTTCTTATCATTCAATATCCAGCGGATCTTCTGAAAGAATAATCCCGGTATTGTCGGCATAAAGATGGTCGc                                                                                                                                <  2:597249/149‑1 (MQ=255)                  tACGCTTCATCTTCCGCTGAATTTCTTTACTGTGTAGGCCAACAGGTAACTCAGAAAAAAGGCCCCTTGCGGTGCCTTTCTTATCATTCAATATCCAGAGGATCTTCTGAAAGAATAATCCCGGTATTGTCGGCATAAAGATGGTCGcc                                                                                                                               <  1:119166/149‑1 (MQ=255)                   cttcatcttccgcgtaatttctttactgtgtaggccaacaggtaacgcagaaaaaaggcaccttgcggtgcctttcttatcattcaatatccagcggatcttctgaaagaataatcccggtattgTTGTCGGCATAAAGATGGTCGCCg                                                                                                                              <  2:424314‑M2/24‑1 (MQ=255)                      cTTGATCTTCCCCGTTACTTCCGTACTGTGTAGCCCAACCAGTAACGCAGAAAAAAGGCCCCTTGCGGTGCCTTTCTTATCATTCAATGTCCAGCGGATCTTCTGAAAGAATAATCCCGGTATTGCCGGCATAAAGATGGTCGCCGgag                                                                                                                           <  1:810837/149‑1 (MQ=255)                       ttCATCTTCCGCGTAATTTCTTTACTGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCTTTCTTATCATTCAATATCCAGCGGATCTTCTGAAAGAATAATCCCGGTATTGTCGGCATAAAGATGGTCGCCGgaga                                                                                                                          >  1:171702/1‑149 (MQ=255)                        gcATCTTCCGCGTAATTTCTTTACTGTGTAGGCCAACAGGTAACGCAGATAAAAGGCACCTTGCGGTGCCTTTCTTATCATTCAATATCCAGCGGATCTTCTGAAAGAATAATCCCGGTATTGTCAGCATAAAGATGGTCGCCGGagaa                                                                                                                         <  1:595310/148‑1 (MQ=255)                        acattctCCTCGTAATTTCTTTCCTGTGCAGGCCGACAGGTACCGCAGAAAAAAGGAACCTTGCGGTGCCTCTCTTATCATTCAATAACCAGCGGATCTTCTGAAAGAATAATCGCGGTACTGTCGGCATAAAGATGGTCGCCGGagaa                                                                                                                         <  1:201712/143‑1 (MQ=255)                             ttCCGCGTAATTTCTTTACTGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCTTTCTTATCATTCAATATCCAGCGGATCTTCTGAAAGAATAATCCCGGTATTGTCGGCATAAAGATGGTCGCCGGAGAAGAAgg                                                                                                                    >  2:309470/1‑149 (MQ=255)                             ttCCGCGTAATTTCTTTACTGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCTTTCTTATCATTCAATATCCAGCGGATCTTCTGAAAGAATAATCCCGGTATTGTCGGCATAAAGATGGTCGCCGGAGAAGAAgg                                                                                                                    >  2:576739/1‑149 (MQ=255)                             ttCCGCGTAATTTCTTTACTGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCTTTCTTATCATTCAATATCCAGCGGATCTTCTGAAAGAATAATCCCGGTATTGTCGACATAAAGATGGTCGCCGGAGAAGAAgg                                                                                                                    >  2:254156/1‑149 (MQ=255)                               ccGCGTAATTTCTTTACTGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCTTTCTTATCATTCAATATCCAGCGGATCTTCTGAAAGAATAATCCCGGTATTGTCGGCATAAAGATGGTCGCCGGagaagatgttg                                                                                                                  >  1:867247/1‑144 (MQ=255)                                cgcgTAACTTCTTTACGGGGTATGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCTTTCTTATCATTCAATATCCAGCGGATCTTCTGAAAGAATAATCCCGGTATTGTCGGCATAAAGATGGTCGCCGGAGAAGAAGGTGa                                                                                                                 <  2:311164/149‑1 (MQ=255)                                              aCTGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCTTTCTTATCATTCAATATCCAGCGGATCTTCTGAAAGAATAATCCCGGTATTGTCGGCATAAAGATGGTGGCCGGAGAAGAAGGTGACACCGCAAAAATTg                                                                                                   >  2:155015/1‑149 (MQ=255)                                              aCTGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCTTTCTTATCATTCAATATCAAGCGGATCTTCTGAAAGAATAATCCCAATATTGTAGACATACAGCTGAACGACGGCGACGGAGGCGGCACCCACAAAAttc                                                                                                   >  1:816616/1‑148 (MQ=255)                                                tgtgTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCTTTCTTATCATTCAATATCCAGCGGATCTTCTGAAAGAATAATCCCGGTATTGTCGGCATAAAGATGGTCGCCGGAGAAGAAGGTGACACCGCCAAAATTGAc                                                                                                 <  1:69373/149‑1 (MQ=255)                                                 taggccaacaggtaacgcagaaaaaaggcaccttgcggtgcctttcttatcattcaatatccagcggatcttctgaaagaataatcccggtattgTTGTCGGCATAAAGATGGTCGCCGGAGAAGAAGGTGACACCGCCAAAATTGAcg                                                                                                >  1:488335‑M2/96‑149 (MQ=255)                                                     aGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCTTTCTTATCATTCAATATCCAGCGGATCTTCTGAAAGAATAATCCCGGTATTGTCGGCATCAAGATGGTCGCCGGAGAAGAAGGTGACACCGCCAAAATTGACGCGGa                                                                                            >  2:240699/1‑149 (MQ=255)                                                     aGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCTTTCTTATCATTCAATATCCAGCGGATCTTCTGAAAGAATAATCCCGGTATTGTCGGCATAAAGATGGTCGCCGGAGAAGAAGGTGACACCGCCAAAATTGACGCGGa                                                                                            >  2:795228/1‑149 (MQ=255)                                                      ggCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCTTTCTTATCATTCAATATCCAGCGGATCTTCTGAAAGAATAATCCCGGTATTGTCGGCATAAAGATGGTCGCCGGAGAAGAAGGTGACACCGCCAAAATTGACGCGGAc                                                                                           >  2:603941/1‑149 (MQ=255)                                                       aacaggtaacgcagaaaaaaggcaccttgcggtgcctttcttatcattcaatatccagcggatcttctgaaagaataatcccggtattgTTGTCGGCATAAAGATGGTCGCCGGAGAAGAAGGGGACACCGCCAAAATTGACGCGGACa                                                                                          >  2:428922‑M2/90‑149 (MQ=255)                                                              ggTAACGCAGAAAAAAGGCACCTTGCGGTGCCTTTCTTATCATTCAATATCCAGCGGATCTTCTGAAAGAATAATCCCGGTATTGTCGGCATAAAGATGGTCGCCGGAGAAGAAGGTGACACCGCCAAAATTGACGCGGACATCGCttt                                                                                   <  2:313685/149‑1 (MQ=255)                                                              ggTAACGCAGAAAAAAGGCACCTTGCGGTGCCTTTCTCATCATTCAATATCCAGCGGATCTTCTGAAAGAATAATCCCGGAATTATCGGCATACAGCTGGTCGCAGAAGACGAAGGTGACACAGGCAAAATAGAcgcgaccaccaccta                                                                                   >  1:474572/1‑138 (MQ=255)                                                                tcaCGCAGAAAAAAGGCCCCTTGCGGTGCCTTTCTTCGCGTTCAATATCCAGCTGATCTTCTGAGAGAATAATACCTGTATTGTCAGCATAAAGCTGGTCGTCGGAGAAGAAGGTGACACCGCCCAAATTGCCGCGGACATCGCTTTCg                                                                                 <  1:430095/147‑1 (MQ=255)                                                                 aaCGCAGAAAAAAGGCACCGTGCGGTGCCTTTCTTATCATTCAATATCCCGCGGATCTTCTGAAAGAATAATCCCGGTATTGTCGGCATAAAGATGGTCGCCGGAGAAGAAGGTGACACCGCCAAAATTGACGCGGACATCGCTTTCGc                                                                                <  2:323532/149‑1 (MQ=255)                                                                    gCAGAAAAAAGGCACCTTGCGGTGCCTTTCTTATCATGCAATATCCAGCGGATCTTCTGAAAGAATAATCCCGGTATTGTCGGCATAAAGATGGTCGCCGGAGAAGAAGGTGACACCGCCAAAATTGACGCGGACATCGCTTTCGCCaa                                                                             <  1:6772/149‑1 (MQ=255)                                                                      aGAAAAAAGGCACCTTGCGGTGCCTTTCTTATCATTCAATATCCAGCGGATCTTCTGAAAGAATAATCCCGGTATTGTCGGCATAAAGATGGTCGCCGGAGAAGAAGGTGACACCGCCAAAATTGACGCGGACATCGCTTTCGCGaaag                                                                           >  1:778870/1‑147 (MQ=255)                                                                                   ctggCGGGGCCTGTCTTAGCATTCAATATCCCGCGGATCTTCTGAAAGAATAATCGCGGTATTGTCGGCATAAAGATGGTCGCCGGAGAAGAAGGTGACACCGCCAAAATTGACGCGGACATCGCTTTCGCCCATGCCTTCGCCAGCgg                                                              <  2:180602/146‑1 (MQ=255)                                                                                   cTTGCGGTGCCTTTCTTATCATTCAATATCCAGCGGATCTTCTGAAAGAATAATCCCGGTATTGTCGGCATAAAGATGGTCGCCGGAGAAGAAGGTGACACCGCCAAAATTGACGCGGACATCGCTTTCGCCAATGCCTTCGCCAGCgg                                                              <  2:180600/149‑1 (MQ=255)                                                                                       cGGTGCCTTTCTTATCATTCAATATCCAGCGGATCTTCTGAAAGAATAATCCCGGTATTGTCGGCATAAAGATGGTCGCCGGAGAAGAAGGTGACACCGCCAAAATTGACGCGGACATCGCTTTCGCCAATGCCTTCGCCAGCGGCAcc                                                          <  2:171702/149‑1 (MQ=255)                                                                                         gTGCCTTTCTTATCATTCAATTTCGAGGGGGTCTTGTGAGAGGGTAAGCCCTGTTTTTTCGGCATAAATATTTTCGCCGTAGAAGAAGGTGACACCGCCAAAATTGACGCGGCCATCGCTTTCGCCAATGCCTTCGCCAGCGGCACCaa                                                        >  1:726058/1‑149 (MQ=255)                                                                                                  ttATCATTCAATATCCAGCGGATCTTCTGAAAGAATAATCCCGGTATTGTCGGCATAAAGATGGTCGCCGGAGAAGAAGGTGACACCGCCAAAATTGACGCGGACATCGCTTTCGCCAATGCCTTCGCCAGCGGCACCAACCGGAATTg                                               >  2:166842/1‑149 (MQ=255)                                                                                                   tATCATTCAATATCCAGCGGATCTTCTGAAAGAATAATCCCGGTATTGTCGGCATAAAGATGGTCGCCGGAGAAGAAGGTGACACCGCCAAAATTGACGCGGACATCGCTTTCGCCAATGCCTTCGCCAGCGGCCCCAACCGGAATTgc                                              >  2:282829/1‑149 (MQ=255)                                                                                                   tATCATTCAATATCCAGCGGATCTTCTGAAAGAATAATCCCGGTATTGTCGGCATAAAGATGGTCGCCGGAGAAGAAGGTGACACCGCCAAAATTGACGCGGACATCGCTTTCGCCAATGCCTTCGCCAGCGGCACCAACCGGAATTgc                                              >  2:541281/1‑149 (MQ=255)                                                                                                   tATCATTCAATATCCAGCGGATCTTCTGAAAGAATAATCCCGGTATTGTCGGCATAAAGATGGTCGCCGGAGAAGAAGGTGACACCGCCAAAATTGACGCGGACATCGCTTTCGCCAATGCCTTCGCCAGCGGCACCAACCGGAATTgc                                              >  1:146466/1‑149 (MQ=255)                                                                                                      cATTCAAAATCCAGCGGATCTTCTGAAAGAATAATCCCGGTATTGTCGGCATAAAGATGGTCGCCGGAGAAGAAGGTGACACCGCCAAAATTGACGCGGACATCGCTTTCGCCAATGCCTTCGCCAGCGGCACCAACCGGAATTgccgc                                           <  1:845240/149‑1 (MQ=255)                                                                                                       aTTCAATATCCAGCGGATCTTCTGAAAGAATAATCCCGGTATTGTCGGCATAAAGATGGTCGCCGGAGAAGAAGGTGACACCGCCAAAATTGACGCGGACATCGCTTTCGCCAATGCCTTCGCCAGCGGCACCAACCGGAATTgccgcc                                          >  2:343598/1‑149 (MQ=255)                                                                                                                 cAGCCGATCTTCTGAAAGAATAATCCCGGTATTGTCGGCATAAAGATGGTCGCCGGAGAAGAAGGTGACACCGCCAAAATTGACGCGGACATCGCTTTCGCCAATGCCTTCGCCAGCGGCACCAACCGGAATTGCCGCCATCGCCTGGa                                <  1:753090/149‑1 (MQ=255)                                                                                                                     ggATCTTCTGAAAGAATAATCCCGGTATTGTCGGCATAAAGATGGTCGCCGGAGAAGAAGGTGACACCGCCAAAATTGACGCGGACATCGCTTTCGACAATGCCTTCGCCAGCGGCACCAACCGGAATTGCCGCCATCGCCTGGATGcc                            <  1:309470/149‑1 (MQ=255)                                                                                                                     ggATCTTCTGAAAGAATAATCCCGGTATTGTCGGCATAAAGATGGTCGCCGGAGAAGAAGGTGACACCGCCAAAATTGACGCGGACATCGCTTTCGACAATGCCCTCGCCAGCGGCACCAACCGGAATTGCCGCCATCGCCTGGATGcc                            <  1:254156/149‑1 (MQ=255)                                                                                                                     ggATCTTCTGAAAGAATAATCCCGGGATTGTCGGCATAAAGATGGTCGCCGGAGAAGAAGGTGACACCGCCAAAATTGACGCGGACATCGCTTTCGACAATGCCTTCGCCAGCGGCACCACCCGGAATTGCCGCCATCGCCTGGATGcc                            <  1:576739/149‑1 (MQ=255)                                                                                                                       aTCTTCTGAAAGAATAATCCCGGTATTGTCGGCATAAAGATGGTCGCCGGAGAAGAAGGTGACACCGCCAAAATTGACGCGGACATCGCTTTCGCCAATGCCTTCGCCAGCGGCACCAACCGGAATTGCCGCCATCGCCTGGATGCCGa                          <  1:559231/149‑1 (MQ=255)                                                                                                                       aTCTTCTGAAAGAATAATCCCGGTATTGTCGGCATAAAGATGGTCGCCGGAGAAGAAGGTGACACCGCCAAAATTGACGCGGACATCGCTTTCGCCAATGCCTTCGCCAGCGGCACCAACCGGAATTGCCGCCATCGCCTGGATGCCGa                          <  1:603163/149‑1 (MQ=255)                                                                                                                         cttctGAAAGAATAATCCCGGTATTGTCGGCATAAAGATGGTCGCCGGAGAAGAGGGTGACACCGCCACAATTGACGCGGACATCGCTTTCGCCAATGCCTTCGCCAGCCGCCCCAACCAGAATTGCCGCCCTGGCCTGGATGCCGata                        >  2:70962/1‑149 (MQ=255)                                                                                                                         cttctGAAAGAATAATCCCGGTATTGTCGGCATAAAGATGGTCGCCGGAGAAGACGGTGACACCGCCACAATTGACGCGGACATCGCTTTCGCCAGCGCCTTCGCCAGCGGCACCAACCGGAATTGCCGCCATCGCCTGGATCCCGtta                        >  2:764426/1‑149 (MQ=255)                                                                                                                         cttctGAAAGAATAATCCCGGTATTGTCGGCATAAAGATGGTCGCCGGAGAAGAAGGTGACACCGCCAAAATTGACGCGGACATCGCTTTCGCCAATGCCTTCGCCAGCGGCACCAACCGGAATTGCCGCCATCGCCTGGCTGCCGata                        >  2:779083/1‑149 (MQ=255)                                                                                                                              gAAAGAATAATCCCGGTATTGCCGGCATAAAGATGGTCGCCGGAGAAGAAGGTGACACCGCCAAAATTGACGCGGACATCGCTTTCGCCAATGCCTTCGCCAGCGGCACCAACCGGAATTGCCGCCATCGCCTGGATGCCGATATCCaa                   <  1:310883/149‑1 (MQ=255)                                                                                                                               aaaGAATAATCCCGGTATTGTCGGCATAAAGATGGTCGCCGGAGAAGAAGGTGACACCGCCAAAATTGACGCGGACATCGCTTTCGCCAATGCCTTCGCCAGCGGCACCAACCGGAATTGCCGCCATCGCCTGGATGCCGATATCCAAc                  >  1:721875/1‑149 (MQ=255)                                                                                                                                    atacttccGGTCTTGTCGGCATAAAGATGGTCGCCGGAGAAGAAGGTGACACCGCCAAACTTGACGCGGACATCGCTTTCGCCTATGCCTTCGCCAGCGGCACCAACCGGAATTGCCGCCATCGCCTGGATGCCGATATCCAACTCTTc             <  1:802079/143‑1 (MQ=255)                                                                                                                                    ataatCCCGGTATTGTCGGCATAAAGATGGTCGCCGGAGAAGAAGGTGACACCGCCAAAATTGACGCGGACATCGCTTTCGCCAATGCCTTCGCCAGCGGCACCAACCGGAATTGCCGCCATCGCCTGGATGCCGATATCCAACTCTTc             <  1:616591/149‑1 (MQ=255)                                                                                                                                    agcatCCCGGTATTGTCGGCATAAAGATGGTCGGCGGAGAAGAAGGTGACACCGCCAAAATTGACGCGGACATCGCTTTCGCCAAGGCCTTCGCTAGCGGCACCAACCGGAATTGCCGCCATCGCCTGGATGCCGATATCCAACTCTTc             <  1:100785/146‑1 (MQ=255)                                                                                                                                       atCCCGGTATTGTCGGCATAAAGATGGTCGCCGGAGAAGAAGGTGACACCGCCAAAATTGACGCGGACATCGCTTTCGCCAATGCCTTCGCCAGCGCCACCAACCGGAATTGCCGCCATCACCTGGATGCCGAGATCCAACTCTTCCaa          >  2:359342/1‑148 (MQ=255)                                                                                                                                        tCCCGGTATTGTCGGCATAAAGATGGTCGCCGGAGAAGAAGGTGACACCGCCAAAATTGACGCGGACATCGCTTTCGCCAATGCCTTCGCCAGCGGCACCAACCGGAATTGCCGCCATCGCCTGGATGCCGATATCCAACTCTTCCAgg         <  1:656114/149‑1 (MQ=255)                                                                                                                                           cGGTATTGTCGGCATAAAGATGGTCGCCGGCGAAGAAGGTGACACCGCCAAAATTGACGCGGACATGGCTATCGCGAATGCATTAGCCAGCGGCACCAACCGGAATTGCCGCCATCGCCTGGATGCCGATAGCCAACTCTTCCAGGTCa      >  1:723188/1‑149 (MQ=255)                                                                                                                                           cGGTATTGTCGGCATAAAGATGGTCGCCGGAGAAGAAGGTGACACCGCCAAAATTGACGCGGACATCGCTTTCGCCAATGCCTTCGCCAGCGGCACCAACCGGAATTGCCGCCATCGCCTGGATGCCGATATCCAACTCTTCCAGGTCa      >  1:229309/1‑149 (MQ=255)                                                                                                                                            attgTTGTCGGCATAAAGATGGTCGCCGGAGAAGAAGGTGACACCGCCAAAATTGACGCGGACATCGCTTTCGCCAATGCCTTCGCCAGCGGCACCAACCGGAATTGCCGCCATCGCCTGGATCCCGATATCCAACTCTTCCAGGTCAt     <  2:488335‑M2/145‑1 (MQ=255)                                                                                                                                               gTTGTCGGCATAAAGATGGTCGCCGGAGAAGAAGGTGACACCGCCAAAATTGACGCGGACATCGCTTTCGCCAATGCCTTCGCCAGCGGCACCAACCGGAATTGCCGCCATCGCCTGGATGCCGATATCCAACTCTTCCAGGTCATCTa  >  2:286991‑M2/2‑149 (MQ=255)                                                                                                                                                |                                                                                                                                                    CATGGAAGAGGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACTGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCTTTCTTATCATTCAATATCCAGCGGATCTTCTGAAAGAATAATCCCGGTATTGTCGGCATAAAGATGGTCGCCGGAGAAGAAGGTGACACCGCCAAAATTGACGCGGACATCGCTTTCGCCAATGCCTTCGCCAGCGGCACCAACCGGAATTGCCGCCATCGCCTGGATGCCGATATCCAACTCTTCCAGGTCATCTA  >  CP009273/4108673‑4108963

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.