| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| JC | CP009273 | 2,420,942:1 | +CGT | 23.8% | coding (329/783 nt) | argT ← | lysine/arginine/ornithine transporter subunit |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 2420939 | 42 (0.860) | 13 (0.270) +CGT |
12/264 | NT | 23.8% | coding (332/783 nt) | argT | lysine/arginine/ornithine transporter subunit |
| ? | CP009273 | 2420940 = | 42 (0.840) | coding (331/783 nt) | argT | lysine/arginine/ornithine transporter subunit | |||||
ACATCCACGCCTTTACTACGCCAGGTCTCGTTAGCGTAAGCTTCCTGGGTTGATCCCTGCAGCACACCAACATGTTTACCTTTCAGTGAATCCAGCGTTGGCTGAATCGGTGAACCTTTGGCCGCAATCAAACGAGAATCTGCGGCGTACAGCTTGTCGGAGAAGGCAATCTCCTGCTGACGTTTATCGGTAATGGAAAGCGACGAAATAATAGCGTCGATTTTTTTCGCTTTCAGTGAGGGGATCAGCGCGTCAAAGTCACTGGCAACCCAGGTACATTTCA > CP009273/2420795‑2421077 | acaTCCACGCCTTTACTACGCCAGGTCTCGTTAGCGTAAGCTTCCTGGGTTGATCCCTGCAGCACACCAACATGTTTACCTTTCAGTGAATCCAGCGTTGGCTGAATCGGTGAACCTTTGGCCGCAATCAAACGAGAATCTGCGGCGTa < 2:250625/149‑1 (MQ=255) ccACGCCTTTACTACGCCAGGTCTCGTTAGCGTAAGCTTCCTGGGTTGATCCCTGCAGCACACCAACATGTTTACCTTTCAGTGAATCCAGCGTTGGCTGAATCGGTGAACCTTTGGCCGCAATCAAACGAGAATCTGCGGCGTACAGc < 1:110268/149‑1 (MQ=255) ctttactacgccaggtctcgttagcgtaagcttcctgggttgatccctgcagcacaccaacatgtttacctttcagtgaatccagcgttggctgaatcggtgaacctttggccgcaatcaaacgagaatctgcggcgtCGTACAGCTTg > 2:275494‑M2/139‑149 (MQ=255) ccTTTACTACGCCAGGTCTCGTTAGCGTAAGCTTCCTGGGTTGATCCCTGCAGCACACCAACATGTTTACCTTTCAGTGAATCCAGCGTTGGCTGAATCGGTGAACCTTTGGCCGCAATCAAACGAGAATCTGCGGCGTACAGCTTGTc < 2:756847/149‑1 (MQ=255) cTTTACTACGCCAGGTCTCGTTAGCGTAAGCTTCCTGGGTTGATCCCTGCAGCACACCAACATGTTTACCTTTCAGTGAATCCAGCGTTGGCTGAATCGGTGAACCTTTGGCCGCAATCAAACGAGAATCTGCGGCGTACAGCTTGTCg < 1:739443/149‑1 (MQ=255) ccAGGTCTCTTTAGCGTAAGCTTCCTGGGTTGACCCCTGCAGCACACCAACATGTTTACCTTTCAGTGAATCCAGCGTTGGCTGAATCGGTGAACCTTTGGCCGCAATCAAACGAGAATCTGCGGCGTACAGCTTGTCGGAGAAGGCaa < 2:662668/149‑1 (MQ=255) gTCTCGTTAGCGTAAGCTTCCTGGGTTGATCCCTGCAGCACACCAACATGTTTACCTTTCAGTGAATCCAGCGTTGGCTGAATCGGTGAACCTTTGGCCGCAATCAAACGAGAATCTGCGGCGTACAGCGTGTCGGAGAAGGCAAtctc > 2:430381/1‑149 (MQ=255) gttagcgtaagcttcctgggttgatccctgcagcacaccaacatgtttacctttcagtgaatccagcgttggctgaatcggtgaacctttggccgcaatcaaacgagaatctgcggcgtCGTACAGCTTGTCGGAGAAGGCAATCTCct > 2:668724‑M2/120‑149 (MQ=255) gttagcgtaagcttcctgggttgatccctgcagcacaccaacatgtttacctttcagtgaatccagcgttggctgaatcggtgaacctttggccgcaatcaaacgagaatctgcggcgtCGTACAGCTTGTCGAAGAAGGCAATCTCct > 2:445377‑M2/120‑149 (MQ=255) tagcgtaagcttcctgggttgatccctgcagcacaccaacctgtttacctttcagtgaatccagcgttggctgaatcggtgaacctttggccgcaatcaaacgagaatctgcggcgtCGTACAGCTTGTCGGAGAAGGCAATCTCctgc < 2:196820‑M2/32‑1 (MQ=255) cgtaagcttcctgggttgatccctgcagcacaccaacatgtttacctttcagtgaatccagcgttggctgaatcggtgaacctttggccgcaatcaaacgagaatctgcggcgtCGTACAGCTTGTCGGAGAAGGCAATCTCCTGCTGa < 1:552397‑M2/35‑1 (MQ=255) gCGTAAGCTTCCTGGGTTGATCCCTGCAGCACACCAACATGTTTACCTTTCAGTGAATCCAGCGTTGGGTGAATCGGTGAACCTTTGGCCGAAATCAAGCGAGAATCTGCGGCGTACAGCTTGTCGGAGAAGGCAATCTCCTGCTGagg > 2:288545/1‑147 (MQ=255) agcttcctgggttgatccctgcagcacaccaacatgtttacctttcagtgaatccagcgttggctgaatcggtgaacctttggccgcaatcaaacgagaatctgcggcgtCGTACAGCTTGTCGGAGAAGGCAATCTCCTGCTGACGtt < 1:92087‑M2/39‑1 (MQ=255) cctgggttgatccctgcagcacaccaacatgtttacctttcagtgaatccagcgttggctgaatcggtgaacctttggccgcaatcaaacgagaatctgcggcgtCGTACAGCTTGTCGGAGAAGGCAATCTCCTGCTGACGTTTATCg < 2:227900‑M2/44‑1 (MQ=255) ctgggttgatccctgcagcacaccaacatgtttacctttcagtgaatccagcgttggctgtgtcggtgaacctttggccgcaatcaaacgagaatctgcggcgtCGTACAGCTTGTCGGAGAAGGCAATCTCCTGCTGACGTTTATCgg > 2:677764‑M2/105‑149 (MQ=255) tggggctaTCCCTGCAGCACACCAACATGTTTACCTTTACGTGAATCCAGCGTTGGCTGAATCGGTGAACCTTTGGCCGCAATCAAACGAGAATCTGCGGCGTACAGCTTGTCGGAGAAGGCAATCTCCTGCTGACGTTTATCGGTAAt < 2:55495/142‑1 (MQ=255) gggTTGATCCCTGCAGCACACCAACATGTTTACCTTTCAGTGAATCCAGCGTTGGCTGAATCGGTGAACCTTTGGCCGCAATCAAACGAGAATCTGCGGCGTACAGCTTGTCGGAGAAGGCAATCTCCTGCTGACGTTTATCGGTAATg < 1:474999/149‑1 (MQ=255) ggTTGATCCCTGCAGCACACCAACATGTTTACCTTTCAGTGAATCCAGCGTTGGCTGAATCGGTGAACCTTTGGCCGCAATCAAACGAGAATCTGCGGCGTACAGCTTGTCGGAGAAGGCAATCTCCTGCTGACGTTTATCGGTAATgg < 1:537947/149‑1 (MQ=255) aTCCCTGCAGCACACCAACATGTTTACCTTTCAGTGAATCCAGCGTTGGCTGCATCGTTGACCCTTTGCCCGCAATCAAACGAGAATCTGCGTCGGACAGCTTGTCGGAGAAGGCAATCTCCTGCTGACGTTTATCGGTAATGGAAAGc > 2:602791/1‑149 (MQ=255) cccTGCAGCACACCAACATGTTTACCTTTCAGTGAATCCAGCGTTGGCTGAATCGGTGAACCTTTGGCCGCAATCAAACGAGAATCTGCGGCGTACAGCTTGTCGGAGAAGGCAATCTCCTGCTGACGTTTATCGGTAATGGAAAGcga < 1:674463/149‑1 (MQ=255) ccgcagcaCACCAACATGTTTACCTTTCAGTGAATCCAGCGTTGGCTGAATCGGTGAACCTTTGGCCGCAATCAAAAGAGAATCTGCGGCGTACAGCTTGTCGGAGAAGGCAATCTCCTGCTGACGTTTATCGGTAATGGAAAGcgacg < 1:351384/147‑1 (MQ=255) acCAACATGTTTACCTTTCAGTGAATCCAGCGTTGGCTGAATCGGTGAACCTTTGGCCGCAATCAAACGAGAGTCTGCGGCGTACAGCTTGTCGGAGAAGGCAATCTCCTGCTGACGTTTATCGGTAATGGAAAGCGACGGAATAATAg > 2:51363/1‑149 (MQ=255) acCAACATGTTTACCTTTCAGTGAATCCAGCGTTGGCTGAATCGGTGAACCTTTGGCCGCAATCAAACGAGAATCTGCGGCGTACAGCTTGTCGGAGAAGGCAATCTCCTGCTGACGTTTATCGGTACTGGAAAGCGACGCACTAATAg > 2:220114/1‑149 (MQ=255) acCAACATGTTTACCTTTCAGTGAATCCAGCGTTGGCTGAATCGGTGAACCTTTGGCCGCAATCAAACGAGAATCTGCGGCGTACAGCTTGTCGGAGAAGGCAATCTCCTGCTGACGGTTACCGGTAATGGAAAGCGACGAAATAATAg > 1:765951/1‑149 (MQ=255) aaCATGTTTACCTTTCAGTGAATCCAGCGTTGGCTGAATCGGTGAACCTTTGGCCGCAATCAAACGAGAATCTGCGGCGTACAGCTTGTCGGAGAAGGCAATCTCCTGCTGACGTTTATCGGTAATGGAAAGCGACGAAATAATAGCGt < 2:695809/149‑1 (MQ=255) tACCTTTCAGTGAATCCAGCGTTGGCTGAATCGGTGAACCTTTGGCCGCAATCAAACGAGAATCTGCGGCGTACAGCTTGTCGGAGAAGGCAATCTCCTGCTGACGTTTATCGGTAATGGAAAGCGACGAAATAATAGCGTCGAttttt < 2:107969/149‑1 (MQ=255) tACCTTTCAGTGAATCCAGCGTTGGCTGAATCGGTGAACCTTTGGCCGCAATAAACCAACGATCTGCGGCGTACAGCTTGTCGGAGAAGGCAATCTCCTGCTGACGTTTATCGGTAATGGAAAGCGACGAAATAATAGCGTCGAttttt < 2:850220/149‑1 (MQ=255) ctttcagtgaatccagcgttggctgaatcggtgaacctttggccgcaatcaaacgagaatctgcggcgtCGTACAGCTTGTCGGAGAAGGCAATCTCCTGCTGACGTTTATCGGTAATGGAAAGCGACGAAATAATAGCGTCGAttttt < 1:558014‑M2/80‑1 (MQ=255) ctttcagtgaatccagcgttggctgaatcggtgaacctttggccgcaatcaaacgagaatctgcggcgtCGTACAGCTTGTCGGAGAAGGCAATCTCATGCTGACGTTTATCGGTAATGGAAAGCGACGAAATAATAGCGTCGAttttt > 1:214731‑M2/70‑149 (MQ=255) ttCAGTGAATCCAGCGTTGGCTGAATCGGTGAACCTTTGGCCGCAATCAAACGAGAATCTGCGGCGTACAGCTTGTCGGAGAAGGCAATCTCCTGCTGACGTTTATCGGTAATGGAAAGCGACGAAATAATAGCGTCGATTTTTTTCGc > 2:55946/1‑149 (MQ=255) cAGTGAATCCCTCGTTGGCCGAATCGGTGAACCTTTGGCCGCAATCAAACGAGAATCTGCGGCGTACAGCTTGTCGGAGAAGGCAATCTCCTGCTGACGTTTATCGGTAATGGAAAGCGACGAAATAATAGCGTCGATTTTTTTCGCtt < 1:282925/149‑1 (MQ=255) aGTGAATCCAGCGTTGGCTGAATCGGTGAACCTTTGGCCGCAATCAAACGAGAATCTGCGGCGTACAGCTTGTCGGAGAAGGCAATCTCCTGCAGGCGATTGTCGGTAATGGAAAGCGACGAAATAATAGCGTCGGTTGTTTTCGCttt > 2:201693/1‑149 (MQ=255) aGTGAATCCAGCGTTGGCTGAATCGGTGAACCTTTGGCCGCAATCAAACGAGAATCTGCGGCATCCAGCTTGTCGGAGAAGGCAATCTCATGCCGACCACGATCGTTAACTGAAAGCGACGAAATAATAGCGTCGATTTTTTTCGCttt > 1:184360/1‑149 (MQ=255) gTGAATCCAGCGTTGGCTGAATCGGTGAACCTTTGGCCGCAATCAAACGAGAATCTGCGGCGTACAGCTTGTCGGAGAAGGCAATCTCCTGCTGACGTTTATCGGTAATGGAAAGCGACGAAATAATAGCGTCGATTTTTTTTGttttt > 1:29198/1‑148 (MQ=255) tGAATCCAGCGTTGGCTGAATCGGTGAACCTTTGGCCGCAATCAAACGAGAATCTGCGGCGTACAGCTTGTCGGAGAAGGCAATCTCCTGCTGACGTTTATCGGTAATGGAAAGCGACGAAATAATAGCGTCGAGTGTTTTCGCTTTCa > 2:759183/1‑149 (MQ=255) tGAATCCAGCGTTGGCTGAATCGGTGAACCTTTGGCCGAAATCAAACGAGAATCTGCGGCGTACAGCTTGTCGGAGAAGGCAACATCCTGCAGACCTTACCCGGCAATGGAAAGCGACGAAATAATAGCGGCGCTTTTTTTCGCTTTCa > 1:91697/1‑149 (MQ=255) cttcgCTGACTCGGTGAACCTGTGGCCGCAATCAAACGAGAATCTGCGGCGTACAGCTTGTCGGAGAAGGCAATCTCCTGCGTACGCTTATCGGTAATGGAAAGCGACGAAATAATAGCGTCGATTTTTTTCGCTTTCAGTGAGGGGAt < 1:198947/145‑1 (MQ=255) ttGGCTGAATCGGTGAACCTTTGGCCGCAATCAAACGAGAATCTGCGGCGTACAGCTTGTCGGAGAAGGCAATCTCCTGCTGACGTTTATCGGTAATGGAAAGCGACGAAATAATAGCGTCGATGTGTTTCGCTTTCAGTGAGGGGATc > 2:855206/1‑149 (MQ=255) tgcgtaaaTCGGTGAACCTTTGGCCGCAATCAAACGAGAATCTGCGGCGTACAGCTTGTCGGAGAAGGCAATCTCCTGCTGACGTTTATCGGTAATGGAAAGCGACGAAATAATAGCGTCGATTTTTTTCGCTTTCAGTGAGGGGATCa < 1:142572/143‑1 (MQ=255) ggCTGAATCGGTGAACCTTTGGCCGCAATCAAACGAGAATCTGCGGCGTACAGCTTGTCGGAGAAGGCAATCTCCTGCTGACGTTTATCGGTAATGGAAAGCGACGAAATAATAGCGTCGATTTTTTTCGCTTTCAGTGAGGGGATCAg < 1:396257/149‑1 (MQ=255) atcggtgaacctttggccgcaatcaaacgagaatctgcggcgtCGTACAGCTTGTCGGAGAAGGCAATCTCCTGCTGACGTTTATCGGTAATGGAAAGCGACGAAATAATAGCGTCGATTTTTTTCGCTTTCAGTGAGGGGATCAgcgc < 2:757698‑M2/106‑1 (MQ=255) aagcGGTGCACCTTTGGCCGCGATCAAACGAGAATCTGCGGGGTACAGCTTGTCGGAGAAGGCAATCTCCTGCTGACGTTTATCGGTAATGGAAAGCGACGAAATAATAGCGTCGATTTTTTTCGCTTTTAGTGAGGGGATCAGCGCGt < 2:668555/146‑1 (MQ=255) aTCGGTGAACCTTTGGCCGCAATCAAACGAGAATCTGCGGCGTACAGCTTGTCGGAGAAGGCAATCTCCTGCTGACGTTTATCGGTAATGGAAAGCGACGAAATAATAGCGTCGATTTTTTTCGCTTTCAGTGAGGGGATCAGCGCGTc > 2:793773/1‑149 (MQ=255) tgaacctttggccgcaatcaaacgagaatctgcggcgtCGTACAGCTTGTCGGAGAAGGCAATCTCCTGCTGACGTGGATCGGTAATGGAAAGCGACGAAATAATAGCGTCGATATTTTTCGCATTCAGCGAGGGGGACAGCGCGTcac > 1:169219‑M2/39‑148 (MQ=255) ggTGAACCTTTGGCCGCAATCAAACGAGAATCTGCGGCGTACAGCTTGTCGGAGAAGGCAATCTCCTGCTGACGTTTATCGGTAATGGAAAGCGACGAAATAATAGCGTCGATTTTTTTCGCTTTCAGTGAGGGGATCAGCGCGTCaaa < 2:283017/149‑1 (MQ=255) ggTCAACCCTTCGCCGCAATCAAACGAGAATCTGCGGCGTACAGCTTGTCGGAGAAGGCAATCGCCTGCTGACGTTTATCGGTAATGGAAAGCGACGAAATAATAGCGTCGATTTTTTTCGCTTTCAGTGAGGGGATCAGCGCGTCaaa < 2:268216/149‑1 (MQ=255) atcccttGGCCGCAATGAAACGAGAATCTGCGGCGTACAGCTTGTCGGAGAACGCAATCTCCTGCTGACGTTTATCGGTAATGGAAAGCGACGAAATAATAGCGTCGATTTTTTTCGCTTTCAGTGAGGGGATCAGCGCGTCAAAGTCa < 1:514841/144‑1 (MQ=255) aaCCTTTGGCCGCAATCAAACGAGAATCTGCGGCGTACAGCTTGTCGGAGAAGGCAATGTCCTGCTGACGTTTATCGGTAATGGAAAGCGACGAAATAATAGCGTCGATTTTTTTCGCTTTCAGTGAGGGGATCAGCGCGTCAAAGTCa < 1:119005/149‑1 (MQ=255) aaCCTTTGGCCGCAATCAAACGAGAATCTGCGGCGTACAGCTTGTCGGAGAAGGCAATCTCCTGCTGACGTTTATCGGTAATGGAAAGCGACGAAATAATAGCGTCGATTTTTTTCGCTTTCAGTGAGGGGATCAGCGCGTCAAAGTCa < 2:145969/149‑1 (MQ=255) aaTCAAACGAGAATCTGCGGCGTACAGCTTGTCGGAGAAGGCAATCTCCTGCTGATGTTTATCGGTAATGGAAAGCGACGAAATAATAGCGTCGATTTTTTTCGCTGTCAGTCAGGGGATCAGCGCGTCAAAGTAACTGGAAACCCAgg > 2:612908/1‑149 (MQ=255) aaTCAAACGAGAATCTGCGGCGTACAGCTTGTCGGAGAAGGCAATCTCCTGCTGACGTTTATCGGTAATGGAAAGCGACGAAATAATAGCGTCGATTTTTTTCGCTTTTTGTGAAGGGATAAACGCGTCAAAGTCACTGGCAAACCggg > 1:611948/1‑149 (MQ=255) aaacgagaatctgcggcgtCGTACAGCTTGTCGGAGAAGGCAATCTCCTGCTGACGTTTATCGGTAATGGAAAGCGACGAAATAATAGCGTCGATTTTTTTCGCTTTCAGTGAGGGGATCAGCGCGTCAAAGTCACTGGCAACCCAGGt < 1:275494‑M2/130‑1 (MQ=255) aaaCGAGAATCTGCGGCGTACAGCTTGTCGGAGAAGGCAATCTCCTGCTGACGTTTATCGGTAATGGAAAGCGACGAAATAATAGCGTCGATTTTTTTCGCTTTCAGTGAGGGGATCAGCGCGTCAAAGTCACTGGCAACCCAGGTACa > 2:844208/1‑149 (MQ=255) aaaCGAGAATCTGCGGCGTACAGCTTGTCGGAGAAGGCAATCTCCTGCTGACGTTTATCGGTAATGGAAAGCGACGAAATAATAGCGTCGATTTTTTTCGCTTTCAGTGAGGGGATAAGCGCGTCAAAGTCACTGGCAACCCAGGTACa > 2:845255/1‑149 (MQ=255) aaaCGAGAATCTGCGGCGTACAGCTTGTCGGAGAAGGCAATCTCCTGCTGACGTTTATCGGTAATGGAAAGCGACGAAATAATAGCGTAGATTTTTTTCGCTTTCAGTGAGGGGATCAGCGCGTCAAAGTCACTGGCAACCCAGGTACa > 2:855268/1‑149 (MQ=255) agaATCTGCGGCGTACAGCTGGGCGGAGAAGGCAATCTCCTGCTGACGTTTATCGGTAATGGAAAGCGACGAAATAATAGCGTCGATTTTTTTCGCCTTCAGTGAGGGGATCAGCGCGTCAAAGTCACTGGCAACCCAGGTACATTTCa < 1:602791/149‑1 (MQ=255) | ACATCCACGCCTTTACTACGCCAGGTCTCGTTAGCGTAAGCTTCCTGGGTTGATCCCTGCAGCACACCAACATGTTTACCTTTCAGTGAATCCAGCGTTGGCTGAATCGGTGAACCTTTGGCCGCAATCAAACGAGAATCTGCGGCGTACAGCTTGTCGGAGAAGGCAATCTCCTGCTGACGTTTATCGGTAATGGAAAGCGACGAAATAATAGCGTCGATTTTTTTCGCTTTCAGTGAGGGGATCAGCGCGTCAAAGTCACTGGCAACCCAGGTACATTTCA > CP009273/2420795‑2421077 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |