New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	2269338 =	20 (0.400)	23 (0.460)	18/276	NT	53.5%	coding (587/1026 nt)	yejE	microcin C transporter YejABEF, permease subunit; ABC family
	?	CP009273	= 3577555	NA (NA)					intergenic (+15/‑1)	insB1/yrhA	IS1 transposase B/pseudogene, interrupted by IS1E

ATTGAGCGGCATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAATATATTCAGTTCGTTTAGTGATTTCTCTTCATTCTTAAACGAAATCATGGACAGTTGTTCATAATAATCAAAAGGAAACAAAAATCATTGTA  >  CP009273/3577409‑3577697                                                                                                                                                   |                                                                                                                                               aTTGAGCGGCATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGa                                                                                                                                              <  2:555140/149‑1 (MQ=31)  ttGAGCGGCATAACCCGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGTAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGAc                                                                                                                                             <  1:789365/149‑1 (MQ=17)       cGGCATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTaa                                                                                                                                        >  1:150420/1‑149 (MQ=35)         gCATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTaaaa                                                                                                                                      <  2:744121/149‑1 (MQ=35)            tAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTAACGACATTAAAAGTa                                                                                                                                   >  1:509332/1‑149 (MQ=37)            tAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTACCTGTACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTa                                                                                                                                   >  2:811519/1‑149 (MQ=255)                cTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACtt                                                                                                                               >  1:84600/1‑149 (MQ=40)                   aataagAGGCAGCACCTGGCACGGCGGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCGTTACCGACATTAAAAGTGACtattt                                                                                                                            >  1:795944/6‑149 (MQ=11)                   aaTCTGAGGCAGCACCTGGCACGGCAGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACttttt                                                                                                                            >  2:487721/1‑149 (MQ=255)                      gtGAGGCAGCACCGGCCACGGCGGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGa                                                                                                                         <  2:314446/148‑1 (MQ=255)                           gcagcaCCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTa                                                                                                                    >  2:19582/1‑149 (MQ=255)                           gcagcaCCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAACTGCATGACAAAGGCATCGGGCATTATCTGAACATAAAACACTATAAATCAGTTGAAGTCAGTACCGACATTAAAAGTAACTTTTTTGAAATTa                                                                                                                    >  1:51919/1‑149 (MQ=17)                                aCCGGGCACGGCTGGGACGGAAGTCGCTGTCGTTCCCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGat                                                                                                               <  1:2257/149‑1 (MQ=255)                                      cACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGTATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATAtt                                                                                                         >  2:844843/1‑149 (MQ=255)                                       aCGGCTGGGACGGAAGTCGCGGTCGGTCACAAAATCGGTGGAGCTGGATGACAATGTCACCGTGCAGTATCTGAACATAAATGTCGCTAAATAATTTGGAGACATTACCGACATTAAAAGTAACTTTTCTGAAATTAGAGCTAATATTg                                                                                                        >  1:220415/1‑149 (MQ=17)                                        cGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTgg                                                                                                       <  2:762819/149‑1 (MQ=255)                                        cGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTgg                                                                                                       <  2:214606/149‑1 (MQ=255)                                        cGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTgg                                                                                                       <  2:603769/149‑1 (MQ=255)                                        cGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTgg                                                                                                       <  1:767599/149‑1 (MQ=255)                                         ggCTGGGACGGAAGTCGCTGTAGTTCTCAAAGTCGGTGGAGCTGCATGACAGTATCAGCGGGCATTATCTGAACATAAAATGCTATCGTTATCTGGTAGGCATTACTGTCATTAAAAGTAACTTTTTTGAAATTAGAGAGAATATTGGc                                                                                                      <  1:45189/149‑1 (MQ=17)                                                 cGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGaaaa                                                                                              <  1:665352/149‑1 (MQ=255)                                                  tgggttgggtGTCGTTGTCAAAATCGGTGGAGCTGCATGACAAAGTCAGCGGGCATTATCTGAACATAAAACACTATCAATAGGTTGGAGTCATTACCGACATTAAAAGTAAGTTTTTTGAAATTAGAGATAATATTGGCACAGAAAat                                                                                             <  1:166894/140‑1 (MQ=18)                                                    aaGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCCGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAaaat                                                                                           >  2:259754/1‑149 (MQ=255)                                                               gTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAATATATTCAGTTCGt                                                                                >  1:233561/1‑149 (MQ=255)                                                                    cAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAATATATTCAGTTCGTTTAGt                                                                           >  2:151421/1‑149 (MQ=255)                                                                          cGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAAAATATTCAGTTCGTTTAGTGATTtc                                                                     >  1:582897/1‑149 (MQ=255)                                                                            ttGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACAGAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTGTGAAATTAGAGATAATATTGGCACAGAAAATTTATTCAGTTCGTTGAGTGATTtttc                                                                   <  1:303985/148‑1 (MQ=25)                                                                                    gCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAATATATTCAGTTCGTTTAGTGATTTCTCTTCATTCt                                                           <  2:90021/149‑1 (MQ=255)                                                                                    gCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAATATATTCAGTTCGTTTAGTGATTTCTCTTCATTCt                                                           <  1:19582/149‑1 (MQ=255)                                                                                         aCAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGCACTCAGATTGGTGCAGAAAATATATTCAGTTCGTTTAGTGATTTCTCTTCATTCTTAAAc                                                      >  2:416574/1‑149 (MQ=25)                                                                                          cAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAATATATTCAGTTCGTTTAGTGATTTCTCTTCATTCTTAAACg                                                     >  1:557388/1‑149 (MQ=255)                                                                                           aaaGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAATATATTCAGTTCGTTTAGTGATTTCTCTTCATTCTTAAACGa                                                    <  2:84600/149‑1 (MQ=255)                                                                                           aaaGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACAGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAATATATTCAGTTCGTTTAGTGATTTCTCTTCATTCTTAAACGa                                                    >  2:341867/1‑149 (MQ=255)                                                                                            aaGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAATATATTCAGTTCGTTTAGTGATTTCTCTTCATTCTTAAAAGaa                                                   >  2:523111/1‑149 (MQ=255)                                                                                                 aTCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAATATATTCAGTTCGTTTAGTGATTTCTCTTCATTCTTAAACGAAATCAt                                              >  1:307304/1‑149 (MQ=255)                                                                                                  tCGGGCATTATCTGAACAAAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATGTTGGCACAGAAAATATATTCAGTTCGTTTAGTGATTTCTCTTCATTCTTAAACGAAATCATg                                             >  2:638656/1‑149 (MQ=255)                                                                                                   caaggaTTATCCGAACATATAACACTTTCAATAAGTTGTAGTCATTACCGACATTAAAAGTAACTCTTTTGAAATTAGCGATAATATTGGCCCAGAAAATATATTCAGTTCGTCTAGTGATTTCTCTTCATTCTTACACGAAATCATgg                                            <  1:164347/144‑1 (MQ=255)                                                                                                    gggCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTGCCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAATATATTCAGTTCGTTTAGTGATTTCTCTTCATTCTTAAACGAATTCATGGa                                           >  2:367374/1‑149 (MQ=255)                                                                                                       cATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGTTATTTTTGTTAATATTAGCACAGAAAATATATTCAGTTAGTTTATTGATTTCTCTTCATTCTTAAAATAATTCATGAACAg                                        >  1:3257/1‑149 (MQ=25)                                                                                                                    tAAAACCCTTTGAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAATATATTCAGTTCGTTTAGTGATTTCTCTTCATTCTTAAACGAAATCATGGACAGTTGTTCAtaataa                           <  1:30309/149‑1 (MQ=255)                                                                                                                     aaaaCACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAATATATTCAGTTCGTTTAGTGATTTCTCTTCATTCTTAAACGAAATCATGGACAGTTGTTCATaataat                          <  1:787910/149‑1 (MQ=255)                                                                                                                          acTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAATATATTCAGTTCGTTTAGTGATTTCTCTTCATTCTTAAACGAAATCATGGACAGTTGTTCATAATAATCaaaa                     <  2:461542/149‑1 (MQ=255)                                                                                                                          acTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAATATATTCAGTTCGTTTAGTGATTTCTCTTCATTCTTAAACGAAATCATGGACAGTTGTTCATAATAATCaaaa                     <  2:422599/149‑1 (MQ=255)                                                                                                                          acTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAATATATTCAGTTCGTTTAGTGATTTCTCTTCATTCTTAAACGAAATCATGGACAGTTGTTCATAATAATCaaaa                     <  2:347919/149‑1 (MQ=255)                                                                                                                              tCAATACGTTGGATTCATTATCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAATATATTCAGTTCGTTTAGTGATTTCTCTTCATTCTTAAACGAAATCATGGACAGTTGTTCATAATAATCAAAAGGaa                 <  1:678171/149‑1 (MQ=255)                                                                                                                               cAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAATATATTCAGTTCGTTTAGTGATTTCTCTTCATTCTTAAACGAAATCATGGACAGTTGTTCATAATCATCAAAAGGaaa                <  2:626387/149‑1 (MQ=255)                                                                                                                                         gAGTCATTACCGACATTAAAAGTACCTTTTTTGAAATTAGAGATAATATTGGCACAGAAAATATATTCAGTTCGTTTAGTGATTTCTCTTCATTCTTAAACGAAATCATGGACAGTTGTTCATAATAATCAAAAGGAAACAAAAATCAt      >  2:648405/1‑149 (MQ=255)                                                                                                                                             cATTACCGACATTAAAAGTAACTTCTTTGAAATTAGAGATAATATTGGCACAGAAAATATATTCAGTTCGTTTAGTGATTTCTCTTCATTCTTAAACGAAATCATGGACAGTTGTTCATGATAATCAAAAGGAAACAAAAATCATTGTa  <  2:530709/149‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                               ATTGAGCGGCATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAATATATTCAGTTCGTTTAGTGATTTCTCTTCATTCTTAAACGAAATCATGGACAGTTGTTCATAATAATCAAAAGGAAACAAAAATCATTGTA  >  CP009273/3577409‑3577697

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.