| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 2269346 | 20 (0.400) | 22 (0.440) | 19/276 | NT | 52.4% | coding (595/1026 nt) | yejE | microcin C transporter YejABEF, permease subunit; ABC family |
| ? | CP009273 | 3576788 = | NA (NA) | intergenic (+10/‑55) | yrhA/insA | pseudogene, interrupted by IS1E/IS1 repressor TnpA | |||||
ACTCTCTGTTCCAGCGTGATGGGCGTGCTGGCGGGGGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGACAACGCTTTATTGAAGTATGGTCGGGGATGCCGACGCTGTTTTTGATTATTTTACTTTCCAGCGTCGTACAGCCTAACTTCTGGTGGCTGCTGGCAATTACTGTCTTGTTTGGCTGGATGAGTCTGGTCGGCGTGGTGCGGGCGGAGTTTTTACGTACTCGTAATTTCGACTACATTCGTGCGGCACAGGCGCTTGGCGTCAGCGATCG > CP009273/2269202‑2269488 | aCTCTCTGTTCCAGCGTGATGGGCGTGCTGGCGGGGGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGACAACGCTTTATTGAAGTATGGTCGGGGATGCCGACGCTGTTTTTGATTATTTTACTTTCCAGCGTCGggtg > 2:600324‑M1/1‑145 (MQ=255)aCTCTCTGTTCCAGCGTGATGGGCGTGCTGGCGGGGGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGACAACGCTTTATTGAAGTATGGTCGGGGATGCCGACGCTGGTTTTGATTATTTTACTTTCCAGCGTCGggtg > 2:21871‑M1/1‑145 (MQ=255) ctctctGGTCCAGTGTGCTGGGCGGCGTGGCGGGGGCGCTGCAAGGCTATTACGGCTGTAAAGTCGAGCTCTGGGCACAACGCTTTATTGAAGTATGGTCGGGGATGCCGACGCTGTTTTTGATTATTTTACTTTCCAGCGTCGTACAg < 2:152198/149‑1 (MQ=255) tctctGTTCCGGCGGGGTGGGCGTGCTGGCGGGGGCGCGACAAGGATATTACGGCGGTAAAGTCGATCTCTGGGGACCACGCTTTATTGAAGTATGGTCGGGGATGCCGACGCTGTTTTTGATTATTTTACTTTCCAGCGTCGggtgat < 1:101916‑M1/149‑7 (MQ=255) tctctGTTCCAGCGTGATGGGCGTGCTGGCGGGGGCGCTACAAGGCTATTCCGGCGGTAAAGTCGATCTCTGGGGACAACGCTTTATTGAAGTATGGTCGGGGATGCCGACGCTGTTTTTGATTATTTTACTTTCCAGCGTCGTACAGc < 2:784165/149‑1 (MQ=255) tctctGTTCCAGCGTGATGGGCGTGCTGGCGGGGGCGCTACAAGGCTATTACGGCGGTAAAGTCGACCTCTGGGGACAACGCCTTATTGAAGTATGGTCGGGGCTGCCGCCGCTGTTTTTGATTATTTTACTTTCCAGCGACGTACAGc > 2:402687/1‑149 (MQ=255) cttCCAGCGTGAGGGGCGTGCTGGCGGGGGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGACAACGCTTTATTGAAGTATGGTCGGGGATGCCGACGCTGTTTTTGGGTATTTTACTTTCCCGGGTCGTACAGCCTCAc > 1:578262/2‑149 (MQ=255) gtgtggtgGGCGTGTGGGGGGGGGCTCTGCTAGGCTGTTACGGCCGTAAACTCGGTCGCGGGGGACAATGCTTTGTTGAGGTCTGGTCGGGGATGCCGACGCTGTTTTTGATTATTTTACTTTCCAGCGTCGTACAGCCTAACTTCtgg < 1:435163/147‑1 (MQ=255) gcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgatcataaaacactatcaataagttggagtcattaccCCAGCGTCGTACAGCCTAACTTCtggtg < 2:589391‑M1/28‑1 (MQ=255) gcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCCAGCGTCGTACAGCCTAACTTCtggtg < 1:590081‑M1/28‑1 (MQ=255) cagcacccggcacggctgggacggaagtcgctgtcgttctcaaaatcggcggagcggcatgacaaagtcatcgggcagtatctgaacataaaacactatcaataagttggagtcattaccCCAGCGTCGTACAGCCTAACTTCtggtgg > 2:97083‑M1/121‑149 (MQ=255) tggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCCAGCGTCGTACAGCCTAACTTCTGGTGGCTGCTgg > 1:282160‑M1/114‑149 (MQ=255) cGTGCTGGCGGGGGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGACAACGCTTTATTGAAGTATGGTCGGGGATGCCGACGCTGTTTTTGATTATTTTACTTTCCAGCGTCGTACAGCCTAACTTCTGGTGGCTGCTgg < 1:36533/149‑1 (MQ=255) gcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCCAGCGTCGTACAGCCTAACTTCTGGTGGCTGCTGGCa > 1:236691‑M1/112‑149 (MQ=255) tGGCGGGGGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGACAACGCTTTATTGAAGTATGGTCGGGGATGCCGACGCTGTTTTTGATTATTTTACTTTCCAGCGTCGggtgatgctgccaacttactgatttagtgtat > 1:763567‑M1/1‑117 (MQ=255) gggCGCTAGAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGGCAACGCTTTATTGAAGTATGGTCGGGGATGCCGACGCTGTGTTTGATTATTTTACTTTCCAGCGTCGGACAGCCTAACTGCTGGGGGCTGCTGGGATTGACTGTc > 1:286664/1‑149 (MQ=255) gggCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGACAACGCTTTATTGAAGTATGGTCGGGGATGCCGACGCTGTTTTTGATTATTTTACTTTCCAGCGTCGTACAGCCTAACTTCTGGTGGCTGCTGGCAATTACTGTc > 1:78375/1‑149 (MQ=255) acggaagtcgctgtcgttctcaaaatcggtggagttgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCCAGCGTCGTACAGCCTAACTTCTGGTGGCTGCTGGCAATTACTGTCtt > 2:509193‑M1/101‑149 (MQ=255) acggaagtcgctggcgttcgcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCCAGCGTCGTACAGCCTAACTTCTGGTGGCTGCTGGCAATTACTGTCtt > 2:509070‑M1/101‑149 (MQ=255) tACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGACAACGCTTTATTGAAGTATGGTCGGGGATGCCGACGCTGTTTTTGATAATTTTACTTTACAGCGTCGTACAGACTAACTTCTGGTGGCTGCTGGCAATTAATGTCTTGttt > 1:520463/1‑149 (MQ=255) tATTACGGCGGTAAAGTCGATCTCTGGGGACAACGCTTTATTGAAGTATGGTCGGGGATGCCGACGCTGTTTTTGATTATTTTACTTTCCAGCGTCGTACAGCCTAACTTCTGGTGGCTGCTGGCCATACCTGTCTTGTTTGGCTGGAt > 2:428411/1‑149 (MQ=255) tATTACGGCGGTAAAGTCGATCTATGGGGGAAGCGCTTTAATGAAGTATAGTCGGGGATGCCGACGCTGTTTTTGATTATTTTACTTTCCAGCATCGggtgctgctgccaacttactgatttagtgtatgatggtgtttttgaggggct > 2:641339‑M1/1‑97 (MQ=255) tcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCCAGCGTCGTACAGCCTAACTTCTGGTAGCTGCTGGCAATTACTGTCTTGTTTGGCTGGATg < 2:238812‑M1/62‑1 (MQ=255) ttctcaaaatcggtggagctgcatgacaaagtcatcgggcgttatctgaacataaaacactatcaataagttggagtcattaccCCAGCGTCGTACAGCCTAACTTCTGGTGGCTGCTGGCAATTACTGTCTTGTTTGGCTGGATGAGt < 2:186606‑M1/65‑1 (MQ=255) aCGGCGGTAAAGTCGATCTCTGGGGACAACGCTTTATTGAAGTATGGTCGGGGATGCCGACGCTGTTTTTGATTATTTTACTTTCCAGCGTCGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccag < 1:38671‑M1/149‑57 (MQ=255) aCGGCGGTAAAGTCGATCTCTGGGGACAACGCTTTATTGAAGTATGGTCGGGGATGCCGACGCTGTTTTTGATTATTTTACTTTCCAGCGTCGTACAGCCTAACTTCTGGTGGCTGCTGGCAATTACTGTCTTGTTTGGCTGGATGAGt < 2:562331/149‑1 (MQ=255) cggcggTAAAGTCGATCTCTGGGGACAACGCTTTATTGAAGTATGGTCGGGGATGCCGACGCTGTTTTTGATTATTTTACTTTCCAGCGTCGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagt < 1:609192‑M1/149‑58 (MQ=255) cggTGAAGTGGATCTCTGGGGACATCGCTTTATTGAAGGATGGCCGGGGATGGCGACGCTGTTTTTGATTATTTTACTTTCTAGCGTCGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggc < 1:136916‑M1/149‑61 (MQ=255) caaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCCAGCGTCGTACAGCCTAACTTCTGGTGGCTGCTGGCAATTACTGTCTTGTTTGGCTGGATGAGTCTgg < 2:153187‑M1/69‑1 (MQ=255) gaagTCGATCTCTGGGGACAACGCTTTATTGAAGTATGGTCGGGGATGCCGACGCTGTTTTTGATTATTTTACTTTCCAGCGTCGggtgatgctgccaacttactgatttagtgtctgatggtgtttttgaggtgctccagtggcttct < 1:195331‑M1/148‑65 (MQ=255) aGTCGATCTCTGGGGACAACGCTTTATTGAAGTATGGTCGGGGATGCCGACGCTGTTTTTGATTATTTTACTTTCCAGCGTCGTACAGCCTAACTTCTGGTGGCTGCTGGCAATTACTGTCTTGTTTGGCTGGATGAGTCTGGTCGGCg < 2:614190/149‑1 (MQ=255) gATCTCTGGGGACAACGCTTTATTGAAGTATGGTCGGGGATGCCGACGCTGTTTTTGATTATTTTACTTTCCAGCGTCGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttct > 2:168329‑M1/1‑79 (MQ=255) aTCTCTGGGGACAACGCTTTATTGAAGTATGGTCGGGGATGCCGACGCTGTTTTTGATTATTTTACTTTCCAGCGTCGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttcta > 1:761885‑M1/1‑78 (MQ=255) aTCTCTGGGGACAACGCTTTATTGAAGTATGGTCGGGGATGCCGACGCTGTTTTTGATTATTTTACTTTCCAGCGTCGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttcta > 1:501132‑M1/1‑78 (MQ=255) tctGGGGACAACCCTTTATTGAAGTAGGGTCGGGGATGCCGACGGTGTTTTTGATTATTTTACTTTCCAGCGTCGTACACCCTAACTTCTGGTGGCTGCTGGCAATTACTGTCTTGTTTGGCTGGATGAGTCTGGTCGGCGTGGTgcgg < 1:383425/149‑1 (MQ=255) tgcatgacaaagtcatcgggccttatctgcacataaaacactatcaataagttggagtcattaccCCAGCGTCGTACAGCCTAACTTCTGGTGGCTGCTGGCAATTACTGTCTTGTTTGGCTGAATGAGTCTGGTCGGCGTGGTgcggg > 2:434536‑M1/66‑149 (MQ=255) ggACAACGCTTTATTGAAGTATGGTCGGGGATGCTGACGCTGGTTTTGATTATTTTACTTTCCAGCGTCGTACAGCCTAACTTCTGGTGGCTGCTGGCAATTACTGTCTTGTTTGGCTGGATGAGTCTGGTCGGCGTGGTGCGGGCGGa < 2:454322/149‑1 (MQ=255) aaCGCTTTATTGAAGTATGGTCGGGGATGCCGACGCTGTTTTTGATTATTTTACTTTCGAGCGTCGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatccgctgtccct > 2:463198‑M1/1‑66 (MQ=255) aaCGCTTTATTGAAGTATGGTCGGGGATGCCGACGCTGTTTTTGATTATTTTACTTTCCAGCGTCGTACAGCCTAACTTCTGGTGGCTGCTGGCAATTACTGTCTTGTTTGGCTGGATGAGTCTGTTCGACGTGGTGCGGGTGGAGttt < 1:591796/149‑1 (MQ=255) caggcattgggcattatctgaacataaaacactagcaagaagttggagtcattaccCCAGCGTCGTACAGCCTAACTTCTGGTGGCTGCTGGCAATTACTGTCTTGTTTGGCTGGATGAGTCTGGTCGGCGTGGTGCGGGCGGAGtttt > 2:422993‑M1/57‑149 (MQ=255) tcatcgggcattatctgaacataaaacacaatcaataagttggagtcattaccCCAGCGTCGTACAGCCTAACTTCTGGTGGCTGCTGGCAATTACTGTCTTGTTTGGCTGGATGAGTCTGGGCGGCGTGGTGCGGGCGGAGGTTTTAc < 1:589055‑M1/96‑1 (MQ=255) taatcgggcattatctgaaaataaaacactatcaataagttggagtcattaccCCAGCGTCGTACAGCCTAACTTCTGGTGGCTGCTGGCAATTACTGTCTTGTTTGGCTGGATGAGTCTGGTCGGCGTGGTGCTGGCGGGGGTTTTAc < 1:839327‑M1/96‑1 (MQ=255) cTTTATTGAAGTATGGTCGGGGATGCCGACGCTGTTTTTGATTATTTTACTTTCCAGCGTCGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctg > 1:155808‑M1/1‑62 (MQ=255) atcgcagtatgGTCGGGGATGCCGACGCTGTTTTTGATTATTTTACTTTCCAGCGTCGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtgactctggttgctatcagctgtccctcctgttca < 1:618570‑M1/144‑92 (MQ=255) aTTGAAGTAGGGTCGGGGATGCCGACGCTGTTTTTGATTATTTTACTTTCCAGCGTCGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttca < 2:730649‑M1/149‑92 (MQ=255) ttGAAGTATGGTCGGGGATGCCGACGCTGTTTTTGATTATTTTACTTTCCAGCGTCGTACAGCCTAACTTCTGGTGGCTGCTGGCAATTACTGTCTTGTTTGGCTGGATGAGTCTGGTCGGCGTGGTGCGGGCGGGGTTTTTACGTACt > 2:478506/1‑149 (MQ=255) ttGAAGTATGGTCGGGGATGCCGACGCTGTTTTTGATTATTTTACTTTCCAGCGTCGTACAGCCTAACTTCTGGTGGCTGCTGGCAATTACTGTCTTGTTTGGCTGGATGAGTCTGGTCGGCGTGGTGCGGGCGGAGTTTTTACGTACt > 1:73382/1‑149 (MQ=255) ttGAAGTATGGTCGGGGATGCCGACGCTGTTTTTGATTATTTTACTTTCCAGCGTCGTACAGCCTAACTTCTGGTGGCTGCTGGCAATTACTGTCTTGTTTGGCTGGATGAGTCTGGTCGGCGTGGTGCGGGCGGAGTTTTTACGTACt > 2:45976/1‑149 (MQ=255) attatctgaacataaaacactatcaataagttggagtcattaccCCAGCGTCGTACAGCCTAACTTCTGGTGGCTGCTGGCAATTACTGTCTTGTTTGGCTGGATGAGTCTGGTCGGCGTGGTGCGGGCGGAGTTTTTACGTACTCGTa > 1:264461‑M1/45‑149 (MQ=255) attatctgaacataaaacactatcaataagttggagccattaccCCAGCGTCGTACAGCCTAACTTCTGGTGGCTGCTGGCAATTACTGTCTTGTTTGGCTGGATGAGTCTGGTCGGCGTGGTGCGGGCGGAGTTTTTACGTACTCGTa > 1:50600‑M1/45‑149 (MQ=255) ggggATGCCGACGCTGTTTTTGATTATTTTACTTTCCAGCGTCGggtgatgctgccaacttactgatttagtgtatgatggtgttaatatgtggttccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggt > 2:850261‑M1/1‑44 (MQ=255) gggATGCCGACGCTGTTTTTGATTATTTTACTTTCCAGCGTCGTACAGCCTAACTTCTGGTGGCTGCTGGCAATTACTGTCTTGTTTGGCTGGATGAGTCTGGTCGGCGTGGTGCGGGCGGAGTTTTTACGTACTCGTAATTTCGACTa < 2:840618/149‑1 (MQ=255) aaaacactatcaataagttggagtcattaccCCAGCGTCGTACAGCCTAACTTCTGGTGGCTGCTGGCAATTACTGTCTTGTTTGGCTGGATGAGTCTGGTCGGCGTGGTGCGGGCGGAGTTTTTACGTACTCGTAATTTCGACTACAt > 2:28956‑M1/32‑149 (MQ=255) aacactatcaataagttggagtcattaccCCAGCGTCGTTCAGCCTAACTTCTGGTGGCTTCTGGCAATTACTGTCTTGTTTGGCTGGATGAGTCTGGTCGGCGTGGTGCGGGCGTGGTTTTTACGTACTTGTAATTTTGTCTACATTc < 1:562825‑M1/120‑1 (MQ=255) cGACGCTGTTTTTGATTATTTTACTTTCCAGCGTCGggtgatgctgccaacttactgatttagtgtgtgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcatctactgacggggtggtgcgta > 2:148060‑M1/1‑36 (MQ=255) gTTTTTGATTCTTTTACTTTCCAGCGTCGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaa < 1:625836‑M1/149‑121 (MQ=255) aataagttggaggccttaccACGGCGTCGTACAGCCTAACTTCTGGTGGCTGCTGTCAAGTACTGTCTGGTTTGGCTGGATGAGTCTGGTCGGCGTGGTGCGGGGGGAGTTTTTGCGTACTCGTAATTTCGGCTAACGTCGTGCggcgc < 1:726171‑M1/129‑3 (MQ=255) tttttGATTATTTTACTTTCCAGCGTCGTACAGCCTAACTTCTGGTGGCTGCTGGCAATTACTGTCTTGTTTGGCTGGATGAGTCTGGTCGGCGTGGTGCGGGCGGGGTTTTTACGTACTCGTAATTTCGACTACATTCGTGCGGaaca > 2:429485/1‑149 (MQ=255) tttGATTATTTTACTTTCCAGCGTCGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctcctgacggggtggtgcgtaacggcaaaag > 1:176708‑M1/1‑26 (MQ=255) ttggtgtcatcgccCCGGCGTCGGACCGGCTAGCTTCTGGTGGCTGCTGGCAATTACTGTCTTGTTTGGCTGGATGAGTCTGGTCGGCGTGGTGCGGGCGGAGTTTTTACGTCCTCGTAATTTCGACTACATTCGTGCGGCACAGgcgc > 1:210846‑M1/15‑149 (MQ=255) ttggagtcattaccCCAGCGTCGTACAGCCTAACTTCTGGTGGCTGCTGGCAATTACTGTCTTGTTTGGCTGGATGAGTCTGGTCGGCGTGGTGCGGGCGGAGTTTTTACGTACTCGTAATTTCGACTACATTCGTTGGGCCCCGgcgc < 1:411683‑M1/135‑1 (MQ=255) gATTATTTTACTTTCCAGCGTCGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagccc > 1:84712‑M1/1‑23 (MQ=255) attTTACTTTCCAGCGTCGggtgatgctgccaacttactgatttagtgtattagggggtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgcc < 2:763567‑M1/149‑131 (MQ=255) ttttACTTTCCAGCGTCGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgccg > 2:365673‑M1/1‑18 (MQ=255) ttttACTTTCCAGCGTCGggtgatgctgccaacttactgaaatagtgtatgatggtgtttttgaggtgctccagcggcttctgcttctaccagctgtccctcctgttcagcttctgacagggtggtgcgtaacggcaatagcacccccc > 1:225915‑M1/1‑18 (MQ=255) tttCCTGGGTCGTACAGCCTAACTTCTGGTGGCTGCTGGCAATTACTGTCTTGTTTGGCTGGATGAGTCTGGTCGGCGTGGTGCGGGCGGAGTTTTTACGTACTCGTAATTTCGACTACATTCGTGCGGCACAGGCGCTTGGCGTCAGc < 2:291033/149‑1 (MQ=255) agcctgaacgggtgatgctgccaacttactgatttagtgtatgatggtgtttttgttgtgttccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgccggacatcag < 2:849787‑M1/141‑140 (MQ=255) ctgaacgggtgatgctgccgactttctgatttagtgtatgatggtgtttttggggggctccagtggcttctgtttctttgagctgtccgtgctgtgcagctactgacggggtggtgcgtaacggcaaaagcaccgccggacatcagcgc < 1:507678‑M1/144‑143 (MQ=255) ctgaacgggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgccggacatcagcgc < 1:695943‑M1/144‑143 (MQ=255) | ACTCTCTGTTCCAGCGTGATGGGCGTGCTGGCGGGGGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGACAACGCTTTATTGAAGTATGGTCGGGGATGCCGACGCTGTTTTTGATTATTTTACTTTCCAGCGTCGTACAGCCTAACTTCTGGTGGCTGCTGGCAATTACTGTCTTGTTTGGCTGGATGAGTCTGGTCGGCGTGGTGCGGGCGGAGTTTTTACGTACTCGTAATTTCGACTACATTCGTGCGGCACAGGCGCTTGGCGTCAGCGATCG > CP009273/2269202‑2269488 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |