New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 312194	NA (NA)	9 (0.180)	8/276	NT	11.0%	intergenic (+30/+3)	insF1/ykgA	IS3 transposase B/pseudogene, AraC family;putative regulator; Not classified; putative ARAC‑type regulatory protein
	?	CP009273	= 642348	73 (1.470)					coding (618/879 nt)	citG	2‑(5''‑triphosphoribosyl)‑3'‑dephosphocoenzyme‑A synthase

AACGGTGTTTAATTATATCGAATGTGATTACAATCGGTGGCGGCGGCACAGTTGGTGTGGCGGCCTCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/312062‑312194 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AGATCCTGAACTGGCATTGCTCGATACCTTGCTCCTACTGATGGCGATCAACGGCGATACCAACGTTGCATCGCGCGGTGGCGAGGGGGGCCTGCGCTGGCTACAGCGCGAGGCGCAAACATTATTGCAAAAAGGGGGCATTCG  <  CP009273/642348‑642205                                                                                                                                                                                                                                                                                       AACGGTGTTTAATGATATGGAATGTGATTACAATCGGTGGCGGCGGCACAGTTGGTGTGGCGGCCTCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAAGATCCTGAACTGGCA                                                                                                                                  <  2:738682/149‑1      tggtgAATTATGTGGAATGTGATTACAATCGGTGGCGGCGGCACAGTTGGTGTGGCGGCCTCAGACCGAAACAATTTGAAAACAAGAACCGCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAAGATCCTGAACTGGCATTGCT                                                                                                                             <  2:420424/144‑1                   cggggggGATTACAAGCGGTGGCGGCGGCACAGTTGGTGTGGCGGCCTCAGTCCGGAACAATGTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAAGATCCTGAACTGGCATTGCTCGATACCTTGCTC                                                                                                                <  2:346189/142‑1                      agcggagtagAATCGGTGGCGGCGGCACAGTTGGCGTGGCGGCCTCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAAGATCCTGAACTGGCATTGCTCGATACCTTGCTCCTA                                                                                                             <  2:686086/139‑1                                  TCGGTGGCGGCGGCACAGTTGGTGTGGCGGCCTCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAAGATCCTGGACTGGCGTTGCTCGATACCTTGCTCCTACTGTTGGCGATC                                                                                                 >  1:401349/1‑149                                                ACAGTTGGTGTGGCGGCCTCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAAGATCCTGAACTGGCATTGCTCGATACCTTGCTCCTACTGATGGCGATCAACGGCGATACCAA                                                                                   >  2:606267/1‑149                                                              GGCCTCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAAGATCCTGAACTGGCATTGCTCGATACCTTGCTCCTACTGATGGCGATCAACGGCGATACCAACGTTGCATCGCGCG                                                                     >  1:549265/1‑149                                                                                                        GCCTGTGTCCATATTACGTGGGTAGGATCAAGATCCTGAACTGGCATTGCTCGATACCTTGCTCCTACTGATGGCGATCAACGGCGATACCAACGTTGCATCGCGCGGTGGCGAGGGGCGCCTGCGCTGGCTACAGCGCGAGGCGCAAA                           >  2:825454/1‑149                                                                                                                         GTGGGGAGGATCAAGATCCTGAACTGGCATTGCTCGATACCTTGCTCCTACTGATGGCGATCAACGGCGATACCAACGTTGCATCGCGCGGTGGCGAGGGGGGCCTGCGCTGGCTACAGCGCGAGGCGCAAACATTATTGCAAAAAGGG          <  2:549265/149‑1                                                                                                                                 GATCAAGATCCTGAACTGGCATTGCTCGATACCTTGCTCCTACTGATGGCGATCAACGGCGATACCAACGTTGCATCGCGCGGTGGCGAGGGGGGCCTGCGCTGGCTACAGCGCGAGGCGCAAACATTATTGCAAAAAGGGGGCATTCG  >  2:265468/1‑149                                                                                                                                                                                                                                                                                       AACGGTGTTTAATTATATCGAATGTGATTACAATCGGTGGCGGCGGCACAGTTGGTGTGGCGGCCTCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/312062‑312194 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AGATCCTGAACTGGCATTGCTCGATACCTTGCTCCTACTGATGGCGATCAACGGCGATACCAACGTTGCATCGCGCGGTGGCGAGGGGGGCCTGCGCTGGCTACAGCGCGAGGCGCAAACATTATTGCAAAAAGGGGGCATTCG  <  CP009273/642348‑642205

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.