New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	310940 =	52 (1.040)	7 (0.140) +TC	7/272	NT	10.3%	intergenic (+1/‑62)	eaeH/insE1	pseudogene, attaching and effacing protein homology;factor; Not classified/IS3 transposase A
	?	CP009273	642345 =	72 (1.450)					coding (621/879 nt)	citG	2‑(5''‑triphosphoribosyl)‑3'‑dephosphocoenzyme‑A synthase

CGTTCAGCAAGCTTCAGGGCTTCACTGCGAAATTCAGGCGAATGCTGTTTACGGGGTTTTTTACTGGTTGATACTGTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP009273/311087‑310940 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ATCTAACCCCTGATCCAGCAGAGTGAGGTAATGCGGCAAGGCGTGATTGATCACCAGTGGATAACCCGCTTCGGCTTCACCGCGTGCGCCGGTAAGGCCAAGCTGTTGGTACAAC  >  CP009273/642345‑642459                                                                                                                                                     ||                                                                                                                    CGTTCAGCAAGCTTCAGGGCTTCACTGCGAAATTCAGGCGAATGCTGTTTACGGGGTTTTTTACTGGTTGATACTGTTTTTGTCATGTGAGTCACCTCTGACTGGGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGAT                                                                                                                      <  2:40843/149‑1  GTTCAGCAAGCTTCAGGGCTTCACTGCGAAATTCAGGCGAATGCTGTTTACGGGGTTTTTTACTGGTTGATACTGTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATC                                                                                                                     >  2:569526/1‑149   TTCATCAAGCTACAGGGCTTCACTGCGAAATTCATGCGAATGCTGTTTACGGGGTTTTTTACTGGTTGATACTGTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCA                                                                                                                    <  1:491401/149‑1    TCAGCTAGCTTCAGGGCTTCACTGCGAAATTCAGGCGAATGCTGTTTACGGGGTTTTTTACTGGTTGATACTGTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAT                                                                                                                   <  2:723325/149‑1                          TGCGAAATTCAGGCGAATGCTGTTTACGGGGTTTTTTACTGGTTGATACTGTTTTTGTCCTGCGAGTTACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTCTTGCTGGGTAAGATCATCTAACCCCTGAGCCAGCCGAGc                                                                                             >  2:813259/1‑148                                            GCTGTTTACGGGGTTTTTTACTGGTTGATACTGTTTTTGTCATGTTAGTCACCTCTGACTGAGGGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCATCTAACCCCTGTTCCAGCAGGGTGAGGGAATGCGGCGAGGC                                                                           >  2:408117/1‑149                                                      GGGTTTTTTACTGGTTGCTCCTGTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTCTTGCTGGGTAAGATCATCTAACCCCTGATCCAGCAGAGTGAGGTAATGCGGCAAGGCGTGATTGATC                                                                 <  1:316497/149‑1                                                           tttgtcttGTTGATAATGTTCTTGTCAGGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCATCTAACCCCTGATCCAGCAGAGTGAGGTAATGCGGCAAGGCGTGATTGATCACCAG                                                            <  2:666547/141‑1                                                                                         gcatccCCTCGGAGTGAGAGTGTTCGCCCTTAGCCGGGTGTCCACGATTGCTGGGTAAGATCATCTAACCCCTGAGCCAGCAGAGTGAGGTAATGCGGCAAGGCGTGATTTATCACCAGTGGATAACCCGCTTCGGCTTCACCGCGTGC                              <  2:804520/143‑1                                                                                                              TTACTCACTTGGCCCGGCGTCCACGATTGCTGGGGAAGATCATCTAACCCCTGATCCAGCAGAGTGAGGTAATGCGGCAAGGCGTGATTGATCACCAGTGGATAACCCGCTTCGGCTTCACCGCGTGCGCCGGTAAGGCCAAGCTGTTG         <  1:813259/149‑1                                                                                                                     gttcGCCGCGTGTCCACTATTCCTGGGTAAGATCATCTAACCCCTGACCCAGCAGAGGGAGGTAATGCGGCAAGGCGGGAGTGATCACCAGTGGATAACCCGCTTCGGCTTCACCGCGTGCGCCGGTAAGGCCAAGCTGTTGGTACAAC  <  1:328395/145‑1                                                                                                                                                     ||                                                                                                                    CGTTCAGCAAGCTTCAGGGCTTCACTGCGAAATTCAGGCGAATGCTGTTTACGGGGTTTTTTACTGGTTGATACTGTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP009273/311087‑310940 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ATCTAACCCCTGATCCAGCAGAGTGAGGTAATGCGGCAAGGCGTGATTGATCACCAGTGGATAACCCGCTTCGGCTTCACCGCGTGCGCCGGTAAGGCCAAGCTGTTGGTACAAC  >  CP009273/642345‑642459

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.