Predicted mutation | ||||||
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evidence | seq id | position | mutation | annotation | gene | description |
RA | CP009273 | 4,183,494 | C→A | R4L (CGT→CTT) | thiF ← | adenylyltransferase, modifies ThiS C‑terminus |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | CP009273 | 4,183,494 | 0 | C | A | 98.3% | 183.6 / NA | 59 | R4L (CGT→CTT) | thiF | adenylyltransferase, modifies ThiS C‑terminus |
Reads supporting (aligned to +/- strand): ref base C (0/1); major base A (25/32); minor base G (0/1); total (25/34) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
CAGCGCCCGCCAGGTACAGCGCAGCAGGTGTACCCAGCCCGCCCAGACCGATAATCAGCACCTGGCTGTCGAGCAGTTTTTGCTGCCCGTCCAGAGCGATATCGTCGAGCAGGATTTGGCGGCTATAACGCATAAAGTCACGGTCATTCATCGCCAACTCCTGCAATTTCCAGCAACTGTGCCGTTGCCAAACGCCAGTCTGCGGCTTGAGTAATGGCGCTGACGACGGCGATACTGCCGACACCCGTTGCTATCACCGCAGGCGCGCGTGCCAGACTGAT > CP009273/4183354‑4183634 | cAGCGCCCGCCAGGTACAGCGCAGCAGGTGTACCCAGCCCGCCCAGACCGATAATCAGCACCAGCCTGTCGAAAAGTTTTTGCTGCCCGTCCAGAGCGATATCGTCGAGCAGGATTTGGCGGCTATAACACATCAAGTCAAGGacattc > 1:219035/1‑149 (MQ=255) gcgcCCGCCAGGTACAGCGCAGCAGGTGTACCCAGCCCGCCCAGACCGATAATCAGCACCTGGCTGTCGAGCAGTTTTTGCTGCCCGTCCAGAGCGATATCGTCGAGCAGGATTTGGCGGCTATAACGCATAAAGTCAAGGtcattcat < 1:143478/149‑1 (MQ=255) gccAGGTACAGCGCAGCAGGTGTACCCAGCCCGCCCAGACCGATAATCAGCACCTGGCTGTCGAGCAGTTTTTGCTGCCCGTCCAGAGCGATATCGTCGAGCAGGATTTGGCGGCTATAACGCATAAAGGCAAGGtcattcat > 2:306467/1‑143 (MQ=255) aGGTACAGCGCAGTAGGTGTACCCAGCCCGCCCAGACCGACAATCAGCACCTGGCTGTCGAGCAGTTTTTGCTGCCCGTCCAGAGCGATATCGTCGAGCAGGATTTGGCGGCTATAACGCATAAAGTCAAGGTCATTCATCGCCAACTc < 1:759564/149‑1 (MQ=255) gTACCGCGCAGCAGGTGTACCCAGCCCGCCCAGACCGATAATCAGCACCTGGCTGTCGAGCAGTTTTTGCTGCCCGTCCAGAGCGATATCGTCGAGCAGGATTTGGCGGCTATACCGCATAAAGTCAAGGTCATTCATCGCCAACTCCt < 1:722183/149‑1 (MQ=255) gTACAGCGCAGCAGGTGTACCCAGCCCGCCCAGACCGATAATCAGCACCTGGCTGTCGAGCAGTTTTTGCTGCCCGTCCAGAGCGATATCGTCGAGCAGGATTTGGCGGCTATAACGCATAAAGTCAAGGTCATTCATTGCCAACTCCt > 1:332106/1‑149 (MQ=255) cgcAGCAGGTGTACCCAGCCCGCCCAGACCGATAATCAGCACCTGGCTGTCGAGCAGTTTTTGCTGCCCGTCCAGAGCGATATCGTCGAGCAGGATTTGGCGGCTATAACGCATAAAGTCAAGGTCATTCATCGCCAACTCCTGCaact > 1:795790/1‑147 (MQ=255) cagcagGTGTACCCAGCCCGCCCAGACCGATAATCAGCACCTGGCTGTCGAGCAGTTTTTGCTGCCCGTCCAGAGCGATATCGTCGAGCAGGATTTGGCGGCTATAACGCATAAAGTCAAGGTCATTCATCGCCAACTCCTGCAATTTc < 1:877631/149‑1 (MQ=255) agcagGTGTACCCAGCCCGCCCAGACCGATAATCAGCACCTGGCTGTCGAGCAGTTTTTGCTGCCCGTCCAGAGCGATATCGTCGAGCAGGATTTGGCGGCTATAACGCATAAAGTCAAGGTCATTCATCGCCCACTCGTGCa > 2:488471/1‑143 (MQ=255) cagGTGTACCCAGCCCGCCCAGACCGATAATCAGCACCTGGCTGTCGAGCAGTTTTTGCTGCCCGTCCAGAGCGATATCGTCGAGCAGGATTTGGCGGCTATAACGCATAAAGTCAAGGTCATTCATCGCCAACTCCTGCAATTTCCAg < 1:724184/149‑1 (MQ=255) tgtACCCAGCCCGCCCCGACCGATGATCAGCACCTGGCGGTCGAGCAGTTTTTGCTGCCCGTCCAGAGCGATATCGTCGAGCAGGATTTGGCGGCTATAACGCATAAAGTCAAGGTCATTCATCGCCAACTCCTGCAATTTCCAGCAAc < 1:776685/149‑1 (MQ=255) tgtACCCAGCCCGCCCAGACCGATAATCAGCACCTGGCTGTCGAGCAGTTTTTGCTGCCCGTCCAGAGCGATATCGTCGAGCAGGATTTGGCGGCTATAACGCATAAAGTCAAGGTCATTCATCGCCAACTCCTGCAATTTcc < 2:137680/143‑1 (MQ=255) accccctcccgcccAGACCGATAATCAGCCCCGGGCTGTCGAGCAGTTTTTGCTGCCCGTCCAGAGCGATATCGTCGAGCAGGATTTGGCGGCTATAACGCATAAAGTCAAGGTCATTCATCGCCAACTCCTGCAATTTCCAg < 2:398505/136‑1 (MQ=255) cAGCCCGCCCAGACCGATAATCAGCACCTGGCTGTCGAGCAGTTTTTGCTGCCCGTCCAGAGCGATATCGTCGAGCAGGATTTGGCGGCTATAACGCATAAAGTCAAGGTCATTCATCGCCAACTCCTGCAATTTCCAGCAACTGTGcc > 1:755106/1‑149 (MQ=255) cAGCCCGCCCAGACCGATAATCAGCACCTGGCTGTCGAGCAGTTTTTGCTGCCCGTCCAGAGCGATATCGTCGAGCAGGATTTGGCGGCTATAACGCATAAAGTCAAGGTCATTCATCGCCAACTCCTGCAATTTCCAGCAACTGTGcc > 1:806636/1‑149 (MQ=255) aGCCCGCCCAGACCGATAATCAGCACCTGGCTGTCGAGCAGTTTTTGCTGCCCGTCCAGAGCGATATCGTCGAGCAGGATGTGGCGGCTATAACGCATAAAGTCAAAGTCCTTCATCGCCAACTCCGGCAATTTCCACCAACt > 2:121706/1‑143 (MQ=255) ccgcccAGACCGATAATCAGCACCTGGCTGTCGAGCAGTTTTTGCTGCCCGTCCAGAGCGATATCGTCGAGCAGGATTTGGCGGCTATAACGCATAAAGTCAAGGTCATTCATCGCCAACTCCTGCAATTTCCAGCAACTGTGCCGTTg > 1:369058/1‑149 (MQ=255) ccgcccAGACCGATAATCAGCACCTGGCTGTCGAGCAGTTTTTGCTGCCCGTCCAGAGCGATATCGTCGAGCAGGATTTGGCGGCTATAACGCATAAAGTCAAGGTCATTCATCGCCAACTCCTGCAAGTTCCAGCACCTGTGCCGTTg > 1:249714/1‑149 (MQ=255) cAGGCCGCTAATCACCACCTGTCTGTCGAGCAGTTTTTGCTGCCCGTCCAGAGCGATATCGTCGAGCAGGATTTGGCGGCTATAACGCATATAGTCAAGGTCATTCATCGCCAACTCCTGCAATTTCCAGCATCTGTGCCGtt < 2:151688/143‑1 (MQ=255) cAGACCGATAATCAGCACCTGGCTGTCGAGCAGTTTTTGCTGCCCGTCCAGAGCGATATCGTCGAGCAGGATTTGGCGGCTATAACGCATAAAGTCAAGGTCATTCATCGCCAACTCCTGCAATTTCCAGCAACTGTGCCGtt < 2:727788/143‑1 (MQ=255) aCCGATAATCAGCACCTGGCTGTCGAGCAGTTTTTGCTGCCCGTCCAGAGCGATATCGTCGAGCAGGATTTGGCGGCTATAACGCATAAAGTCAAGGTCATTCATCGCCAACTCCTGCAATTTCCAGCAACTGTGCCGTTGCCCAACGc > 1:552264/1‑149 (MQ=255) ccGATAATCAGCACCTGGCTGTCGAGCAGTTTTTGCTGCCCGTCCAGAGCGATATCGTCGAGCAGGATTTGGCGGCTATAACGCATAAAGTCAAGGTCATTCATCGCCAACTCCTGCAATTTCCAGCAACTGTGCCGTTGCCa < 2:688563/143‑1 (MQ=255) gATAATCAGCACCTGGCTGTCGAGCATTTTTTGCTGCCCGTCCAGAGCGATATCGTCGAGCAGGATTTGGCGGCTATAACGCATAAAGTCAAGGTCATTCATCGCCAACTCCTGCAATTTCCAGCAACTGTGCCGTTGCCaaa < 2:174332/143‑1 (MQ=255) gATAAGCAGCGCCTGGCTGGCGAGCAGTTTTTGCTGCCCGTCCAGAGCGATATCGTCGAGCAGGATTTGGCGGCTATAACGCATAAAGTCAAGGTCATTCATCGCCAACTCCTGCAATTTCCAGCAACTGTGCCGTTGCCaaa < 2:621926/143‑1 (MQ=255) tgaaTCTGTACCTGGTTGTCGACCAGTTTTTGCTGCCCGTCCAGAGCGATATCGTCGAGCAGGATTTGGCGGCTATAACGCATAAAGCCAAGGCCAGTCATCGCCAACTCCTGCAATTTCCAGCAACTGTGCCGTTGCCAAAc < 2:323191/141‑1 (MQ=255) aTCAGCACCTGGCTGTCGAGCAGTTTTTGCCGAGAGTATACAGCGATATCGTCGAGCAGGATTTGGCGGCTATAACGCATAAAGTCAAGGTCATTCATCGCCAACTCCGGCAAGTTCCAGCAACTGTGGCGTTGCCAAACGCCAGTCTg > 1:448793/1‑149 (MQ=255) cAGCACCTGGCTGTCGAGCAGTTTTTGCTGCCCGTCCAGAGCGATATCGTCGAGCAGGATTTGGCGGCTATAACGCATAAAGTCAAGGTCATTCATCGCCAACTCCTGCAATTTCCAGCAACTGTGCCGTTGCCAAACGCCAGTCTGCg > 1:661360/1‑149 (MQ=255) cAGCACCTGGCTGTAGAGCAGTTTTTGCTGCCCGTCTAGAGCCATATCGTCGAGCAGGATTTGGCGGCTATAACGCATAAAGTCAAGGTCATTCATCGCCAACTCCTGCAATTTCCAGCAACTGTGCCGTTGCCACACGCCAGTCTGCg < 1:647237/149‑1 (MQ=255) cccgggCTGTCGAGCCGTTTTCGCTGCCCGTCCAGAGCGCTCTCGCCGAGCAGGATTTGGCGGCTATAACTCAGAACGCAAGGGTCATGCTTCGCCAACTCCTGCAATTTCCAGCAACTGTGCCGTTGCCAAACGCCAGTCTGCGGCtt < 1:217587/145‑1 (MQ=255) ccTGGCTGGCGAGCAGTTTTTGCTGCCCGTCCAGAGCGATATCGTCGAGCAGGATTTGGCGGCTATAACGCATAAAGTCAAGGTCATTCATCGCCAACTCCTGCAATTTCCAGCAACTGTGCCGTTGCCAAACGCCAGTCTGc < 2:522748/143‑1 (MQ=255) cTGTCGAGCAGTTTTTGCTGCCCATCCAGAGCGATATCGTCGAGCAGGATTTGGCGGCTATAACGCATAAAGTCAAGGTCATTCATCGCCAACTCCTGCAATTTCCAGCAACTGTGCCGTTGCCAAACGCCAGTCTGCGGCtt < 2:526590/143‑1 (MQ=255) aGCAGTTTTTGCTGCCCGTCCAGAGCGATATCGTCGAGCAGGATTTGGCGGCTATAACGCATAAAGTCAAGGTCATTCATCGCCAACTCCTGCAATTTCCAGCAACTGTGCCGTTGCCAAACGCCAGTCTGCGGCTTGAGTaa < 2:817540/143‑1 (MQ=255) gTTTTTGCTGCCCGTCCAGAGCGATATCCTCGAGCAGGATTTGGCGGCTATAACGCATAAAGTCAAGGTCATTCATCGCCAACTCCTGCAATTTCCAGCAACTGTGCCGTTGCCAAACGCCAGTCTGCGGCTTGAGTAATGGCGCTgac < 1:887234/149‑1 (MQ=255) tttttGCTGCCCGTCCAGAGCGATATCGTCGAGCAGGATTTGGCGGCTATAACGCATAAAGTCAAGGTCATTCATCGCCAACCCCTGCAATTTCCAGCAACTGTGCCGTTGCCAAACGCCACTCTGCGGCTTGAGTAATgggg > 2:471165/1‑141 (MQ=255) tttttGCGGCCCGTCCAGAGCGATATCGTCGAGCAGGATTTGGCGGCTATAACGCATAAAGTCAAGGTCATTCATCGCCAACTCCTGCAATTTCCAGCAACTGTGCCGTTGCCAAACGCCAGTCTGCGGCTTGAGTAATGgcg < 2:735674/143‑1 (MQ=255) gctgcCCGTCCAGAGCGATATCGTCGAGCAGGATTTGGCGGCTATAACGCATAAAGTCAAGGTCATTCATCGCCAACTCCTGCAATTTCCAGCAACTGTGCCGTTGCCAAACGCCAGTCTGCGGCTTGAGTAATGGCGCTGACGACGGc > 1:639882/1‑149 (MQ=255) gcCCGTCCAGAGCGATATCGTCGAGCAGGATTTGGCGGCTATAACGCATAAAGTCAAGGTCATTCATCGCCAACTCCTGCAATTTCCAGCAACTGTGCCGTTGCCAAACGCCAGTCTGCGGCTTGAGTAATGGCGCTGACGACGGCGAt < 1:201250/149‑1 (MQ=255) cccGTCCAGAGCGATATCGTCGAGCAGGATTTGGCGGCTATAACGCATAAAGTCAAGGTCATTCGTCGCCAACTCCTGCAATTTCCAGCAACTGTGCCGTTGCCAAACGCCAGTCTGCGGCTTGAGTAATGGCGCTGacgacg > 2:313651/1‑143 (MQ=255) cccGGCCAGAGCGATATCGGCGAGCAGGATTTGGCGGCTATAACGCATAAAGTCAAGGTCATTCATCGCCAACTCCTGCAATTTCCAGCAACTGTGCCGTTGCCAAACGCCAGTCTGCGGCTTGAGTAATGGCGCTGACGACGGCGATa < 1:125460/149‑1 (MQ=255) ccGTCCAGAGCGATATCGTCGAGCAGGATTTGGCGGCTATAACGCATAAAGTCACGGTCATTCATCGCCAACTCCTGCAATTTCCAGCAACTGTGCCGTTGCCAAACGCCAGTCTGCGGCTTGAGTAATGGCGCTGACGACgg < 2:814947/143‑1 (MQ=255) tCCAGAGCGATATCGTCGAGCAGGATTTGGCGGCTATAACGCATAAAGTCAAGGTCATTCATCGCCAACTCCTGCAATTTCCAGCAACTGTGCCGTTGCCAAACGCCAGTCTGCGGCTTGAGTAATGGCGCTGACGACGGCGATACTGc < 1:692463/149‑1 (MQ=255) cAGAGCGATATCGTCGAGCAGGATTTGGCGGCTATAACGCATAAAGTCAAGGTCATTCATCGCCAAAACCTGCAATGTCCAGCAACTGTGCCGTTGCCAAACGCCAGTCTGGGGCTTGGGTAATGGCGGTGACGACGGCGATACTGCCg > 1:356510/1‑149 (MQ=255) agagCGATATCGTCGAGCAGGATTTGGCGACTATAACGCATAAAGTCAAGGTCATTCATCGCCCACTCCTGCAATTTCCAGCAACTGTGCCGTTGCCAAACGCCAGTCTGCGGCTTGAGTAATGGCGCTGACGACGGGGATACTGCCGa > 1:595445/1‑149 (MQ=255) gCGATATCGTCGAGCAGGATTTGGCGGCTATAACGCATAACGTCAAGGTCATTCATCGCCAACTCCTGCAATTTCCAGCAACTGTGCCGTTGCCAAACGCCAGTCTGCGGCTTGAGTAATGGCGCTGACGACGGCGATACTGCCGacac < 1:739990/149‑1 (MQ=255) gCGATATCGTCGAGCAGGATTTGGCGGCTATAACGCATAAAGTCAAGGTCATTCATCGCCAACTCCTGCAATTTCCGGCAACTGTGCCGTTGCCAAACGCCAGTCTGTCACGTAATTAATGGGGCTGACGACGGCGATACTGc < 2:380928/143‑1 (MQ=255) atCGTCGAGCAGGATTTGGCGGCTATAACGCATAAAGTCAAGGTCATTCATCGCCAACTCCTGCAATTTCCAGCAACTGTGCCGTTGCCAAACGCCAGTCTGCGGCTTGAGTAATGGCGCTGACGACGGCGATACTGCCGACACCCGtt < 1:633433/149‑1 (MQ=255) gtcgAGCAGGATTTGGCGGCTATAACGCATAAAGTCAAGGTCATTCATCGCCAACTCCTGCAATTTCCAGCAACTGTGCCGTTGCCAAACGCCAGTCTGCGGCTTGAGTACTGGCGCTGACGCCGGCGATACTGCCGACTCCCGTTGCt > 1:410773/1‑149 (MQ=255) tcgAGCAGGATTTGGCGGCTATAACGCATAAAGTCAAGGTCATTCATCGCCAACTCCTGCAATTTCCAGCAACTGTGCCGTTGCCAAACGCCAGTCTGCGGCTTGAGTAATGGCGCTGACGACGGCGATACTGCCGACACCCGTTGCTa > 1:340589/1‑149 (MQ=255) aGCAGGATCTGGCGGCTATAACGCATAAAGTCAAGGTCATTCATCGCCAACTCCTGCAATTTCCAGCAACTGTGCCGTTGCCATCTTTGATTCTGCGGCTTGTCGAATGGCGCTGACGACGGCGATACTGCCGACACCCGTTGCTATCa < 1:218438/149‑1 (MQ=255) cAGCATTTGGCGGCTATAACGCATAAAGTCAAGGTCATTCATCGCCACCTCCTGCAATTTCCAGCAACTGTGCCGTTGCCAACCGCCAGTCTGCGGCTTGAGTAATGGCGCTGACGACGGCGATACTGCCGACACCCGTTGCt < 2:657909/143‑1 (MQ=255) aGGATTTGGCGGCTATAACGTATAAAGTCAAGGTGTTTCATCGCCAACTCCTGCAATTTCCAGCAGCTGTGCCGTTGCCAAACGCCAGTCTGCGGCTTGAGTAATGGCGCTGACGACGGCTATATTGCCGACACCCGTTGCTa < 2:357095/143‑1 (MQ=255) gATTTGGCGGCTATAACGCATAAAGTCAAGGTCATTCATCGCCAACTCCTGCAATTTCCAGCAACTGTGCCGTTGCCAAACGCCAGTCTGCGGCTTGAGTAATGGCGCTGACGACGGCGATACTGCCGACACCCGTTGCTATc < 2:226413/143‑1 (MQ=255) gcggcTATAACGCATAAAGTCAAGGTCATTCATCGCCAACTCCTGCAATTTCCAGCGACTGTGCCGTTGCCAAACGCCAGTCTGCGGCTTGAGAAATGGCGCTGACGACGGCGATACTGCGGACCCCCGGTGCTATCACCGCa > 2:541446/1‑143 (MQ=255) ggcTATAACGCATAAAGTCAAGGTCATTCATCGCCAACTCCTGCAATTTCCAGCAACTGTGTCGTTGCCAAACGCCAGTCTGCGGCTTGAGTAATGGCGCTGACGACGGCGATACTGCCGACACCCGTTGCTATCACCGCAGGcgcgcg > 1:865552/1‑149 (MQ=255) taACGCATAAAGTCAAGGTCATTCATCGCCAACTCCTGCAATTTCCAGCAACTGTGCCGTTGCCAAACGCCAGTCTGCGGCTTGAGTAATGGCGCTGACGACGGCGATACTGCCGACACCCGTTGCTATCACCGCAGGCGCGCGTGCCa > 1:49461/1‑149 (MQ=255) gCATAAAGTCAAGGTCATTCATCGCCAACTCCTGCAATTTCCAGCAACTGTGCCGTTGCCAAACGCCAGTCTGCGGCTTGAGTAATGGCGCTGACGACGGCGATACTGCCGACACCCGTTGCTATCCCCGCAGGCGCGCGTGCCAGACt > 1:428461/1‑149 (MQ=255) gCATAAAGTCAAGGTCATTCATCGCCAACTCCTGCAATTTCCAGCAACTGTGCCGTTGCCAAACGCCAGTCTGCGGCTTGAGTAATGGCGCTGACGACGGCGATACTGCCGACACCCGTTGCTATCACCGCAGGCGCGCGTGCCAGACt < 1:243388/149‑1 (MQ=255) tAAAGTCAAGGTCATTCCTCGCCAACTCCTGCAATTTCCAGCAACTGTGCCGTTGCCAAACGCCAGTCTGCGGCTTGAGTAATGGCGCTGACGACGGCGATACTGCCGACACCCGTTGCTATCACCGCAGGCGCGCGTGCCAGACTGAt < 1:647042/149‑1 (MQ=255) tAAAGTCAAGGTCATTCATCGCCAACTCCTGCAATTTCCAGCAACTGTGCCGTTGCCAAACGCCAGTCTGCGGCTTGAGTAATGGCGCTGACGACGGCGATACTGCCGACACCCGTTGCTCTCACCGCCGGCGCGCGTGCCAGACTGAt > 1:115996/1‑149 (MQ=255) | CAGCGCCCGCCAGGTACAGCGCAGCAGGTGTACCCAGCCCGCCCAGACCGATAATCAGCACCTGGCTGTCGAGCAGTTTTTGCTGCCCGTCCAGAGCGATATCGTCGAGCAGGATTTGGCGGCTATAACGCATAAAGTCACGGTCATTCATCGCCAACTCCTGCAATTTCCAGCAACTGTGCCGTTGCCAAACGCCAGTCTGCGGCTTGAGTAATGGCGCTGACGACGGCGATACTGCCGACACCCGTTGCTATCACCGCAGGCGCGCGTGCCAGACTGAT > CP009273/4183354‑4183634 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |