New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 = 405166233 (0.610)4 (0.080) 3/272 7.9 11.6% intergenic (‑268/‑105) glnA/typA glutamine synthetase/GTP‑binding protein
?CP009273 = 4051693 30 (0.590)intergenic (‑299/‑74) glnA/typA glutamine synthetase/GTP‑binding protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TTATCATGCGCACCATCGTGCAAAAGGGCTGCACCACGATGTGAATGTTGCACCAATATAGTGCTTCAATGGAAACATTAAGCACCATGTTGGTGCAATGACCTTTGGATAACCCTTTTTATGCTCCGTGAAAGCGATCACAAAGGGACTCTGCAATACTTGTTTGCGGAGGATGTTTGTGATCCTGTTTTGTAGTGCGATTAATCCGTGTACAATAACGCGCTATTTCTAATGCCTGAGGCAAAGTTGTGATCGAAAAATTGCGTAATATCGCCATCATCGCGCACGTA  >  CP009273/4051519‑4051808
                                                                                                                                               |                                                                                                                                                  
ttATCATGCGCACCATCGTGCAAAAGGGCTGCACCACGATGTGAATGTTGCACCAATATAGTGCTTCAATGGAAACATTAAGCACCATGTTGGTGCAATGACCTTTGGATAACCCTTTTTATGCTCCGTGAAAGCGATCACAAAGGGAc                                                                                                                                               >  1:378675/1‑149 (MQ=255)
  aTCATGCTAACCATCGTGCAAAAGGGCTGCACCACGATGTGAATGTTGCACCAATATAGTGCTTCAATGGAAACATTAAGCACCATGTTGGTGCAATGACCTTTGGATAACCCTTTTTATGCTCCGTGAAAGCGATCACAAAg                                                                                                                                                   <  2:209328/143‑1 (MQ=255)
     aTGCGCACCATCGTGCAAAAGGGCTGCACCACGATGTGAATGTTGCACCAATATAGTGCTTCCATGGAAACATTAAGCACCATGTTGGTGCAATGACCTTTGGATAACCCTTTTTATGCTCCGTGAAAGCGATCACAAAGGGa                                                                                                                                                >  2:58541/1‑143 (MQ=255)
             cATCGTGCAAAAGGGCTGCACCACGATGTGAATGTTGCACCAATATAGTGCTTCAATGGAAACATTAAGCACCATGTTGGTGCAATGACCTTTGGATAACCCTTTTTATGCTCCGTGAAAGCGATCACAAAGGGACTCTGCaa                                                                                                                                        <  2:594109/143‑1 (MQ=255)
                cGTGCAAAAGGGCTGCACCACGATGTGAATGTTGCACCAATATAGTGCTTCAATGGAAACATTAAGCACCATGTTGGTGCAATGACCTTTGGATGAACCTTTTTATGCTCCGTGAAAGCGCTCGCAAAGAGACTCTGCAATACTTGttt                                                                                                                               >  1:441597/1‑149 (MQ=255)
                   tcAAAAGGGCTGCACCACGATGTGAATGTTGCACCAATATAGTGCTTCAATGGAAACATTAAGCACCATGTTGGTGCAATGACCTTTTGATAACCCTTTTTATGCTCCGTGAAAGCGATCACAAAGGGACTCTGCAATACTTGTTTGCg                                                                                                                            <  1:129099/148‑1 (MQ=255)
                   gCAAAAGGGCTGCACCACGATGTGAATGTTGCACCAATCAAATGCTCCAAGGGAAACATTAAGCACCATGTTGGTGCAATGACCTTTGGATAACCCTTTTTATGCTCCGTGAAAGCGATCACAAAGGGACTCTGCAATACTTGTTTGCg                                                                                                                            <  1:70942/149‑1 (MQ=255)
                    cAAAAGGGCTGCACCACGATGTGAATGTTGCACCAATATAGTGCTTCAATGGAAACATTAAGCACCATGTTGGTGCAATGACCTTTGGATAACCCTTTTTATGCTCCGTGAAAGCGATCACAAAGGGACTCTGCAATACTTGTTTGCgg                                                                                                                           <  1:516295/149‑1 (MQ=255)
                     agaaGGGCTGCACCACGATGTGAATGTTGCACCAATATAGTGCTTCAATGGAAACATTAAGCACCATGTTGGTGCAATGACCTTTGGATAACCCTTTTTATGCTCCGTGAAAGCGATCACAAAGGGACTCTGCAATACTTGtt                                                                                                                                <  2:772209/141‑1 (MQ=255)
                         gggCTGCACCACGATGTGAATGTTGCACCAATATAGTGCTTCAATGGAAACATTAAGCACCATGTTGGTGCAATGACCTTTGGATAACCCTTTTTATGCTCCGTGAAAGCGATCACAAAGGGACTCTGCAATACTTGTTTGCGGAGGAt                                                                                                                      <  1:116268/149‑1 (MQ=255)
                          ggCTGCACCACGATGTGAATGTTGCACCAATATAGTGCTTCAATGGAAACATTAAGCACCATGTTGGTGCAATGACCTTTGGATAACCCTTTTTATGCTCCGTGAAAGCGATCACAAAGGGACGCTGCAATACTTGTTAGCGGAGGATg                                                                                                                     >  1:505707/1‑149 (MQ=255)
                                  cacGATGTGAATGTTGCACCAATATAGTGCTTCAATGGAAACATTAAGCACCATGTTGGTGCAATGACCTTTGGATAACCCTTTTTATGCTCCGTGAAAGCGATCACAAAGGGACTCTGCAATACTTGTTTGCGGAGGATGTTTGTGAt                                                                                                             <  1:726484/149‑1 (MQ=255)
                                         tgAATGTTGCACCAATATAGTGCTTCAATGGAAACATTAAGCACCATGTTGGTGCAATGACCTTTGGATAACCCTTTTTATGCTCCGTGAAAGCGATCACAAAGGGACTCTGCAATACTTGTTTGCGGAGGATGTTTGTGATc                                                                                                            <  2:339371/143‑1 (MQ=255)
                                             tGTTGCACCAATATAGTGCTTCCTGCTGAGCAGTATGCAGCATGTATGTTGAAGGACCTTTGGATAACCCCTTTTATGCTCCGTGAAAGCGATCACAAAGGGACTCTGCAATACTTGTTTGCGGAGGATGTTTGTGATCCTGTTTTGTa                                                                                                  <  1:436856/149‑1 (MQ=255)
                                               ttGCACCAATATAGTGCTTCAATGGAAACATTAAGCACCATGTTGGTGCAATGACCTTTGGATAACCCTTTTTATGCTCCGTGAAAGCGATCACAAAGGGACTCTGCAATACTTGTTTGCGGAGGATGTTTGTGATCCTGttt                                                                                                      >  2:838214/1‑143 (MQ=255)
                                                   atcAATATAGTGCTTCAATGGAAACATTAAGCACCATGTTGGTGCAATGACCTTTGGATAACCCTTTTTATGCTCCGTGAAAGCGATCACAAGGGGACTCTGCAATACTTGTTTGCGGAGGATGTTTGTGATCCTGTTTTGTAGTGCGa                                                                                            <  1:127370/147‑1 (MQ=255)
                                                   aCCAATATAGTGCTTCAATGGAAACATTAAGCACCATGTTGGTGCAATGACCTTTGGATAACCCTTTTTATGCTCCGTGAAAGCGATCACAAAGGGACTCTGCAATACTTGTTTGCGGAGGCTGTTTGTGATCCTGTTTTGTAGTGCGa                                                                                            >  1:34252/1‑149 (MQ=255)
                                                   aCCAATATAGTGCTTCAATGGAAACATTAAGCACCATGTTGGTGCAATGACCTTTGGATAACCCTTTTTATGCTCCGTGAAAGCGATCACAAAGGGACTCTGCAATACTTGTTTGCGGAGGATGTTTGTGATCCTGTTTTGTAGTGCGa                                                                                            >  1:805175/1‑149 (MQ=255)
                                                               cTTCAATGGAAACATTAAGCACCATGTTGGTGCAATGACCTTTGGATAACCCTTTTTAGGCTCCGTGAAAGCGATCACAAAGGGACTCTGCAATACTTGTTTGCGGAGGATGTTTGTGATCCTGTGTTGTAGTGCGATTAATc                                                                                      >  2:545611/1‑143 (MQ=255)
                                                                           cATTAAGCACCATGTTGGTGCAATGACCTTTGGATAACCCTTTTTATGCTCCGTGAAAGCGATCACAAAGGGACTCTGCAATACTTGTTTGCGGAGGATGTTTGTGATCCTGTTTTGTGGTGCGATTAATCCGTGTACAATAACGCGCt                                                                    >  1:806632/1‑149 (MQ=255)
                                                                                  cACCATGTTGGTGCAATGACCTTTGGATAAACAATTGAGTGCTCCGTGAAAGCGATCACAAAGGGACTCTGCAATACTTGTTTGCGGAGGATGTTTGTGATCCTGTTTTGTAGTGCGATTAATCCGTGTACAATAACGCGCTATTTCTa                                                             >  1:904873/1‑149 (MQ=255)
                                                                                     cATGTTGGTGCAATGACCTTTGGATAACCCTTTTTATGCTCCGTGAAAGCGATCACAAAGGGACTCTGCAATACTTGTTTGCGGAGGATGTTTGTGATCCTGTTTTGTAGTGCGATTAATCCGTGTACAATAACGCGCTATTTCTCATg                                                          >  1:99923/1‑149 (MQ=255)
                                                                                           ggTGCAATGACCTTTGGATAACCCTTTTTATGCTCCGTGAAAGCGTTCACAAAGGGACTCTGCAAGACTTGTTTGCGGAGGATGTTTGTGATCCTGTTTTGTAGTGCGATTAATCCGTGTACAATAACGCGCTATTTCTAATGCCTGAg                                                    <  1:43100/149‑1 (MQ=255)
                                                                                               cAATGACCTTTGGATAACCCTTTTTATGCTCCGTGAAAGCGATCACAAAGGGACTCTGCAATACTTGTTTGCGGAGGATGTTTGTGATCCTGTTTTGTAGTGCGATTAATTCGTGTACAATAACGCGCTATTTCTAATGCCTg                                                      >  2:492518/1‑143 (MQ=255)
                                                                                                     ccTTTGGATAACCCTTGTTATGCTCCGTGAAAGCGATCACAAAGGGCCTCGGCAATACTTGTTTGCGGAGGATGTTTGTGACCCCGTTTTGTAGTGCGATTAATCCGTGTACAATAACGCGCTATTTCTAATGCCTGAGGCaa                                                <  2:240635/143‑1 (MQ=255)
                                                                                                       tttGGATAACCCTTTTTATGCTCCGTGAAAGCGATCACAAAGGGACTCTGCAATACTTGTTTGCGGAGGATGTTTGTGATCCTGTTTTGTAGTGCGATTAATCCGTGTACAATAACGCGCTATTTCTAATGCCTGAGGCAAAGTTGTGa                                        <  1:215562/149‑1 (MQ=255)
                                                                                                             tAACCCTTTTTATGCTCCGTGAAAGCGATCACAAAGGGACTCTGCAATACTTGTTTGCGGAGGATGTTTGTGATCCTGTTTTGTAGTGCGATTAATCCGTGTACAATAACGCGCTCTTTCTAATGCCTGAGGCAAAGTTGTGGTCGaaa                                  >  1:118853/1‑149 (MQ=255)
                                                                                                                              cGTGAAAGCGATCACAAAGGGACTCTGCAATACTTGTTTGCGGAGGATGTTTGTGATCCTGTTTTGTAGTGCGATTAATCCGTGTACAATAACGCGCTATTTCTAATGCCTGAGGCAAAGTTGTGATCGAAAAATTGCGTAATATCGcc                 <  1:138685/149‑1 (MQ=255)
                                                                                                                                     gCGATCACAAAGGGACTCTGCAATACTTGTTTGCGGAGGATGTTTGTGATCCTGTTTTGTAGTGCGATTAATCCGTGTACAATAACGCGCTATTTCTAATGCCTGAGGCAAAGTTGTGATCGAAAAATTGCGTAATATCGCca                <  2:90297/143‑1 (MQ=255)
                                                                                                                                             aaaGGGACTCTGCAATACTTGTTTGCGGAGGATGTTTGTGATCCTGTTTTGTAGTGCGATTAATCCGTGTACAATAACGCGCTATTTCTAATGCCTGAGGCAAAGTTGTGATCGAAAAATTGCGTAATATCGCCATCATCGCGCGCGTa  >  1:282131/1‑149 (MQ=255)
                                                                                                                                             aaaGGGACTCTGCAATACTTGTTTGCGGAGGATGTTTATGATCCTGTTTTGTAGTGCGATTAAGCCGTGTACAATAACGCGCTATTTCTAATGCCTGAGGCAAAGTTGTGATCGAAAAATTGCGTAATATCGCCATCATCGCGCACGTa  >  1:594766/1‑149 (MQ=255)
                                                                                                                                               aGGGACTCTGCAATACTTGTTTGCGGAGGATGTTTGTGATCCTGTTTTGTAGTGCGATTAATCCGTGTACAATAACGCGCTATTTCTAATGCCTGAGGCGAAGTTGTGATCGAAAAATTGCGTAATATCGCCATCATCGCGCa      >  2:487387/1‑143 (MQ=255)
                                                                                                                                               aGGGACTCTGCAATACTTGTTTGCGGAGGATGTTTGTGATCCTGTTTTGTAGTGCGATTAATCCGTGTACAATAACGCGCTATTTCTAATGCCTGAGGCAAAGTTGTGATCGAAAAATTGCGTAATATCGCCATCATCGCGCa      >  2:67442/1‑143 (MQ=255)
                                                                                                                                               |                                                                                                                                                  
TTATCATGCGCACCATCGTGCAAAAGGGCTGCACCACGATGTGAATGTTGCACCAATATAGTGCTTCAATGGAAACATTAAGCACCATGTTGGTGCAATGACCTTTGGATAACCCTTTTTATGCTCCGTGAAAGCGATCACAAAGGGACTCTGCAATACTTGTTTGCGGAGGATGTTTGTGATCCTGTTTTGTAGTGCGATTAATCCGTGTACAATAACGCGCTATTTCTAATGCCTGAGGCAAAGTTGTGATCGAAAAATTGCGTAATATCGCCATCATCGCGCACGTA  >  CP009273/4051519‑4051808

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.