New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	1317644 =	58 (1.080)	3 (0.060)	3/272	7.9	5.7%	coding (168/882 nt)	yciV	PHP domain protein
	?	CP009273	1317699 =	44 (0.870)					coding (223/882 nt)	yciV	PHP domain protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

AGTGATTTACGACCTGCACAGCCATACCACAGCTTCCGATGGCTGCCTGACGCCAGAAGCATTGGTGCACCGTGCAGTCGAGATGCGCGTCGGCACCCTGGCGATCACCGACCATGACACCACAGCTGCAATCGCGCCAGCAAGAGAGGAAATTTCACGTTCGGGACTGGCGTTGAATCTTATTCCCGGCGTGGAAATTTCCACGGTCTGGGAAAATCATGAAATTCATATTGTCGGGCTGAATATTGATATTACTCATCCGCTAATGTGTGAGTTCCTCGCGCAGCA  >  CP009273/1317497‑1317784                                                                                                                                                    |                                                                                                                                             aGTGATTTACGACCTGCACAGCCATACCACAGCTTCCGATGGCTGCCTGACGCCAGAAGCATTGGTGCACCGTGCAGTCGAGATGCGCGTCGGCACCCTGGCGATCACCGACCATGACACCACAGCTGCAATCGCGCCAGCAAGAGAgg                                                                                                                                             >  1:764559/1‑149 (MQ=255)       ttACGACCTGCACAGCCATACCACAGCTTCCGATGGCTGCCTGACGCCAGAAGCATTGGTGCACCGTGCAGTCGAGATGCGCGTCGGCACCCTGGCGATCACCGACCATGACACCCCAGCTGCAATCGCTCCAGCAAGAGAgg                                                                                                                                             >  2:126415/1‑143 (MQ=255)       ttACGACCTGCACAGCCATACCACAGCTTCCGATGGCTGCCTGACGCCAGAAGCATTGGTGCACCGTGCAGTCGAGATGCGCGTCGGCACCCTGGCGATCACCGACCATGACACCACAGCTGCAATCGCGCCAGCAAGAGAGGAAAttt                                                                                                                                       <  1:201717/149‑1 (MQ=255)        tACGACCTGCACAGCCATACCACAGCTTCCGATGGCTGCCTGACGCCAGAAGCATTGGTGCACCGTGCAGTCGAGATGCGCGTCGGCACCCTGGCGATCACCGACCATGACACCACAGCTGCAATCGCGCCAGCAAGAGAGGAAATTTc                                                                                                                                      <  1:689539/149‑1 (MQ=255)          cGACCTGCACAGCCATACCACAGCTTCCGATGGCTGCCTGACGCCAGAAGCATTGGTGCACCGTGCAGTCGAGATGCGCGTCGGCACCCTGGCGATCACCGACCATGACCCCACAGCTGCAATCGCGCCAGCAAGAGAGGaaa                                                                                                                                          >  2:269998/1‑143 (MQ=255)           gACCTGCACAGCCATACCACAGCTTCCGATGGCTGCCTGACGCCAGAAGCATTGGTGCACCGTGCAGTCGAGATGCGCGTCGGCACCCTGGCGATCACCGCCCATGACACCACAGCTGCAATCGCGCCAGCCAGAGAGGaact                                                                                                                                         >  2:14311/1‑141 (MQ=255)            aCCTGCACAGCCATACCACAGCTTCCGATGGCTGCCTGACGCCAGAAGCATTGGTGCACCGTGCAGTCGCGCTCCGCGTCGGCACCCTGGCGATCACCGACCATGACCCCACAGCTGCAAGCGCGCCAGCAACAGAGGaaact                                                                                                                                        >  2:91490/1‑141 (MQ=255)            aCCTGCACAGCCATACCACAGCTTCCGATGGCTGCCTGACGCCAGAAGCATTGGTGCACCGTGCAGTCGAGATGCGCGTCGGCACCCTGGCGATCACCGACCATGACACCACAGCTGCAATCGCGCCAGCAAGAGAggcactt                                                                                                                                        >  2:781994/1‑138 (MQ=255)            aCCTGCACAGCCATACCACAGCTTCCGATGGCTGCCTGACGCCAGAAGCATTGGTGCACCGTGCAGTCGAGATGCGCGTCCGCACCCTGGCGATCACCGACCATGACACCACAGCTGCAATCGCGCCAGCAAGAGAGGAAAtt                                                                                                                                        <  2:506693/143‑1 (MQ=255)                     gCCATACCACAGCTTCCGATGGCTGCCTGACGCCAGAAGCATTGGTGCACCGTGCAGTCGAGATGCGCGTCGGCACCCTGGCGATCACCGACCATGACACCACAGCTGCAATCGCGCCAGCAAGCGAGGAAACTTCACGTTCg                                                                                                                               >  2:28960/1‑143 (MQ=255)                                gCTTCCGAGGGCTGCCTGACGCCAGAAGCATTGCTGCACCGTGCAGTCGAGATGCGCGTCGGCACCCTGGCGATCACCGACCATGACACCACAGCTGCAATCGCGCCAGCAAGAGAGGAAATTTCACGTTCGGGACTGGCGTTGAATCt                                                                                                              >  1:670193/1‑149 (MQ=255)                                  ttCCGATGGCTGCCTGACGCCAGAAGCATTGGTGCACCGTGCAGGCGAGATGCGCGTCGGCACCCTGGAAATCACCGACTATGATACCACATCTTCAATCGCGCCAGCAAGAGAGGAAATTTCACGTTCGGGACTGGCGTTGAATCTTa                                                                                                            <  1:444328/149‑1 (MQ=255)                                  gtCCGATGGCTGCCTGACGCCAGAAGCATTGGTGCACCGTGCAGTCGGACTGCCCGGCGGCACCCTGGCGATCACCGACCATGACACCACAGCTGCAATCGCGCCAGCAAGAGAGGAAATTTCACGTTCGGGACTGGCGTTGAATCTTa                                                                                                            <  1:25984/148‑1 (MQ=255)                                            tGCCTGACGCCAGAAGCATTGGTGCACCGTGCAGTCGAGATGCGCGTCGGCACCCTGGCGATCACCGACCATGACACCACAGCTGCAATCGCGCCAGCAAGAGAGGAAATTTCACGTTCGGGACTGGCGTTGAATCTTATTCCCGGCGt                                                                                                  <  1:297777/149‑1 (MQ=255)                                              ccTGACGCCAGAAGCATTGGTGCACCGTGCAGTCGAGATGCGCGTCGGCACCCTGGCGATCACCGACCATGACACCACAGCTGCAATCGCGCCAGCAAGAGAGGACATTTCCCGTTCGGGACTGGCGTTGAATCTTATTCCCGGCgggg                                                                                                >  1:105849/1‑149 (MQ=255)                                                 gACGCCAGAAGCATTGGTGCACCGTGCAGTCGAGATGCGCGTCGGCACCCTGGCGATCACCGACCATGACACCACAGCTGCAATCGCGCCAGCAAGAGAGGTAATTTCACGTTCGGGACTTGCATTGAATCTTATTCCCGGCGTGGaaa                                                                                             <  1:515714/149‑1 (MQ=255)                                                  gcGCCAGAAGCATTGGTGCACCGTGCAGGCGAGATGCGCGTCGGCACCCTGGCGATCACCGACCATGACACCACAGCTGCAATCGCGCCAGCAAGAGAGGAAATTTCACGTTCGGGACTGGCGTTGAATCTTATTCCCGGCGTGGAAAt                                                                                            <  1:759076/148‑1 (MQ=255)                                                  aCGCCAGAAGCATTGGTGCACCGTGCAGTCGAGATGCGCGTCGGCACCCTGGCGATCACCGACCATGACACCACAGCTGCAATCGCGCCAGCAAGAGAGGAAATTTCACGTTCGGGACTGGCGTTGAATCTTATTCCCGGCGt                                                                                                  <  2:824679/143‑1 (MQ=255)                                                     ccAGAAGCATTGGTGCACCGTGCAGTCGAGATGCGCGTCGGCACCCTGGCGATGGCCGACCGTGACACCACAGCTGCAATCGCGCCAGCAAGAGAGGAAATTTCACGTTCGGGACTGGCGTTGAATCTTCTTCCCGGCGTGGAAATTTc                                                                                         >  1:631925/1‑149 (MQ=255)                                                     ccAGAAGCATTGGTGCACCGTGCAGTCGAGATGCGCGTCGGCACCCTGGCCATCACCGACCATGACACCACAGCTGCAATCGCGCCAGCAAGAGAGGAAATTTCACGTTCGGGACTGGCGTTGAATCTTATTACAGGAGTGGAAATTTc                                                                                         >  1:631914/1‑149 (MQ=255)                                                     ccAGAAGCATTGGTGCACCGTGCAGTCGAGATGAGCGTCGGCACCCTGGCGATCACCGACCATGACACCACAGCTGCAATCGCGCCAGCAAGAGAGGAAATTTCACGTTCGGGACTGGCGTTGAATCTTATTCCCGGCGTGGAAATTTc                                                                                         >  1:670445/1‑149 (MQ=255)                                                       aGAAGCATTGGTGCACCGTGCAGTCGAGATGCGCGTCGGCACCCTGGCGATCACCGACCATGACACCACAGCTGCAATCGCGCCAGCAAGAGAGGAAATTTCACGTTCGGGCCTGGCGTTGAATCTTATTCCCGGCGTGGaaa                                                                                             >  2:387971/1‑143 (MQ=255)                                                       aGAAGCATTGGTGCACCGTGCAGTCGAGATGCGCGTCGGCACCCTGGCGATCACCGACCATGACACCACAGCTGCAATCGCGCCAGCAAGAGAGGAAATTTCACGTTCGGGACTGGCGTTGAATCTTATTCCCGGCGTGGcaa                                                                                             >  2:635339/1‑143 (MQ=255)                                                       aGAAGCATTGGTGCACCGGGCAGTCGAGATGCGCGTCGGCACCCTGGCGATCACCGACCATGACACCACAGCTGCAATCGCGCCAGCAAGAGAGGAAATTTCACGTTCGGGACTGGCGTTGAATCTTATTCCCGGCGTGGAAATTTCCa                                                                                       <  1:517734/149‑1 (MQ=255)                                                        gAAGCATTGGTGCACCGTGCAGTCGAGATGCGCGTCGGCACCCTGGCGATCACCGACCATGACACCACAGCTGCAATCGCGCCAGCAAGAGAGGAAATTTCACGTTCGGGACTGGCGTTGAATCTTATTCCCGGCGTGGAAAt                                                                                            <  2:509556/143‑1 (MQ=255)                                                             aTTGGTGCACCGTGCAGTCGAGATGCGCGTCGGCACCCTGGCGATCACCGACCATGACACCACAGCTGCAATCGCGCCAGCAAGAGAGGAAATTTCACGTTCGGGACTGGCGTTGAATCTTATTCCCGGCGTGGAAATTTCCa                                                                                       <  2:401035/143‑1 (MQ=255)                                                                 gTGCACCGTGCAGTCGAGATGCGCGTCGGCACCCTGGCGATCACCGACCATGACACCACAGCTGCAATCGCGCCAGCAAGAGAGGAAATTTCACGTTCGGGACTGGCGTTGAATCTTATTCCCGGCGTGGAAATTTCCACGGTCTGGGa                                                                             >  1:567703/1‑149 (MQ=255)                                                                        gggCAGTCGAGATGCGCGTCGGCACCCTGGCGATCACCGACCATGACACCACAGCTGCAATCGCGCCAGCAAGAGAGGAAATTTCACGTTCGGGACTGGCGTTGAATCTTATTCCCGGCGTGGAAATTTCCACGGTCTGGGAAAATCAt                                                                      <  1:819579/147‑1 (MQ=255)                                                                                gagaTGCGCGTCGGCACCCTGGCGATCACCGACCATGACACCACAGCTGCAATCGCGCCAGCAAGAGAGGAAATTTCACGTTCGGGACTGGCGTTGAATCTTATTCCCGGCGTGGAAATTTCCACGGTCTGGGAAAATCATGAAATTCa                                                              >  1:4096/1‑149 (MQ=255)                                                                                 agaTGCGCGTCGGCACCCTGGCGATCACCGACCATGACACCACAGCTGCAATCGCGCCAGCAAGAGAGGAAATTTCACGTTCGGGACTGGCGTTGAATCTTATTCCCGGCGTGGAAATTTCCACGGTCTGGGAAAATCATGAAATTCat                                                             >  1:733895/1‑149 (MQ=255)                                                                                       gcgTCGGCACCCTGGCGATCACCGACCATGACCCCACAGCTGCAATCGCGCCAGCAAGAGAGGAAATTTCACGTTCGGGACTGGCGTTGAATCCGATTCCCGGCGTGGAAATTTCCACGGTCTGGGAAAATCATGAAATTCat                                                             <  2:216356/143‑1 (MQ=255)                                                                                        tctccgCACCCTGGCGATCACCGACCATGACACCACAGCTGCAATCGCGCCAGCAAGAGAGGAAATTTCACGTTCGGGACTGGCGTTGAATCTTATTCCCGGCGTGGAAATTTCCACGGTCTGGGAAAATCATGAAATTCATATTGTCg                                                      <  1:410777/144‑1 (MQ=255)                                                                                             gCACCCTGGCGATCACCGACCATGACACCACAGCTGCAATCGCGCCAGCAAGCGCGGCACTTTCACGTTCGGGACTGGCGTTGAATCTTATTCACGGCGTGGAAATTTCCACGGTCTGGGAAAATCCTGAAATTCATATTGTCGGGCTg                                                 >  1:641425/1‑149 (MQ=255)                                                                                             gCACCCTGGCGATCACCGACCATGACACCACAGCTGCAATCGCGCCAGCAAGAGAGGAAATTTCACGTTCGGGACTGGCGTTGAATCGTATTCCCGGCGTGGGAATTTCCACGGTCTGGGAAAAGCATGAAGTTCATCTCGTc                                                       >  2:368056/1‑143 (MQ=255)                                                                                                 ccTGGCGATCACCGACCATGACACCACAGCTGCAATCGCGCCAGCAAGAGAGGAAATTTCACGTTCGGGACTGGCGTTGAATCTTATTCCCGGCGTGGAAATTTCCCCGGGCTGGGAAAATCATGAAATTCATATTGTCgggacggata                                             >  1:130/1‑142 (MQ=255)                                                                                                   tGGCGATCACCGACCATGACACCACAGCTGCAATCGCGCCAGCAAGAGGGGAAATTTCACGTTCGGGACTGGCGTTGAATCTTATTCCCGGCGTGGAAATTTCCACGGTCTGGGAAAATCATGAAATTCATATTGTCGGGcgg                                                 >  2:138354/1‑141 (MQ=255)                                                                                                   tGGCGATCACCGACCATGACACCACAGCTGCAATCGCGCCAGCAAGAGAGGAAATTTCACGTTCGGGACTGGCGTTGAATCTTATTCCCGGCGTGGAAATTTCCACGGTCTGGGAAAATCATGAAATTCATATTGTCGGGCTGAATAtt                                           <  1:697592/149‑1 (MQ=255)                                                                                                   tGGCGATCACCGACCATGACACCACAGCTGCAATCGCGCCAGCAAGAGAGGAAATTTCACGTTCGGGACTGGCGTTGAATCTTATTCCCGGCGTGGAAATTTCCACGGTCTGGGAAAATCATGAAATTCATATTGTCGGGCTGAATAtt                                           >  1:788331/1‑149 (MQ=255)                                                                                                    ggCGATCACCGACCATTACACCACAGCTGCAATCGCGCCAGCAAGAGAGGAAATTTCACGTTCGGGACTGGCGTTGAATCTTAGTCCCGGCGTGGAAATTTCCACGGTCTGGGAAAATCATGAAATTCATATTGTCGGGCTGAATATTg                                          <  1:357978/149‑1 (MQ=255)                                                                                                      cGATCACCGACCATGACACCACAGCTGCAATCGCGCCAGCAAGAGAGGAAATTTCACGTTCGGGACTGGCGTTGAATCTTATTCCCGGCGTGGAAATTTCCACGGTCTGGGAAAATCATGAAATTCATATTGTCGGGCTGAATATTGat                                        <  1:428368/149‑1 (MQ=255)                                                                                                          cACCGACCATGACACCACAGCTGCAATCGCGCCAGCAAGAGAGGAAATTTCACGTTCGGGACTGGCGTTGAATCTTATTCCCGGCGTGGAAATTTCCACGGTCTGGGAAAATCATGAAATTCATATTGTCGGGCTGAATATTGATATTa                                    <  1:307321/149‑1 (MQ=255)                                                                                                          cACCGACCATGACACCACAGCTGCAATCGCGCCAGCAAGAGAGGAAATTTCACGTTCGGGACTGGCGTTGAATCTTATTCCCGGCGTGGAAATTTCCACGGTCTGGGAAAATCATGAAATTCATATTGTCGGGCTGAATATTGATATTa                                    <  1:174606/149‑1 (MQ=255)                                                                                                            ccGACCATGACACCACAGCTGCAATCGCGCCAGCAAGAGAGGAAATTTCACGTTCGGGACTGGCGTTGAATCTTATTCCCGGCGTGGAAATTTCCACGGTCTGGGAAAATCATGAAATTCATATTGTCGGGCTGAATATTGat                                        <  2:704561/143‑1 (MQ=255)                                                                                                              gACCATGACACCACAGCTGCAATCGCGCCAGCAAGAGAGGAAATTTCACGTTCGGGACTGGCGTTGAATCTTATTCCCGGCGTGGAAATTTCCACGGTCTGGGGAAATCGTGAAAGTCATATTGTCGGGCTGACTATTGCTATTACTCa                                >  1:882489/1‑149 (MQ=255)                                                                                                              gACCAGGACACCACAGCTGCAATCGCGCCAGCAAGAGAGGAAATTTCACGTTCGGGACTGGCGTTGAATCTTATTCCCGGCGTGGAAATTTCCACGGTCTGGGAAAATCATGAAATTCATATTGTCGGGCTGAATATTGatat                                      <  2:806442/143‑1 (MQ=255)                                                                                                                acttGACGCCACAGCTGCAATCGCGCCAGCAAGAGAGGACATTTCACGTTCGGGACTGGCGTTGAATCTTAGTCCCGGCGTGGAAATTTCCACGGTCTGGGAAAATCATGAAATTCATATTGTCGGGCTGAATATTGATATTACTCATc                              <  1:299438/146‑1 (MQ=255)                                                                                                                   tGACACCACAGCTGCAATCGCGCCAGCAAGAGAGGAAATTTCACGTTCGGGACTGGCGTTGAATCTTATTCCCGGCGTGGAAATTACCACGGGCTGGGAAAATCATGAAATTCATATTGTCGGGATGAATATTGATATTACTCATCCGc                           <  1:131682/149‑1 (MQ=255)                                                                                                                    gACACCACAGCTGCAATCGCGCCAGCAAGAGAGGAAATTTCACGTTCGGGACTGGCGTTGAATCTTATTCCCGGCGTGGAAATTTCCACGGTCTGGGAAAATCATGAAATTCATATTGTCGGGCTGAATATTGATATTACTCa                                >  2:762306/1‑143 (MQ=255)                                                                                                                          caagaggccaTCGCGCCAGCAACGGACGAAATTTCACGTTCGGGACTGGCGTTGAATCTTATTCCCGGCGTGGAAATTTCCACGGTCTGGTAAAATCATGAAATTCATATTGTCGGGCTGAATATTGATATTACTCATcgaac                          <  2:130793/134‑5 (MQ=255)                                                                                                                             gCTGCAATCGCGCCAGCAAGAGAGGAAATTTCACGTTCGGGACTGGCGTTGAATCTTATTCCCGGCGTGGAAATTTCCACGGTCTGGGAAAATCATGAAATTCATATTGTCGGGCTGAATATTGATATTACTCATCCGCTAATGTGTGa                 <  1:730461/149‑1 (MQ=255)                                                                                                                                gCAATCGCGCCAGCAAGAGAGGAAATTTCACGTTCGGGACTGGCGTTGAATCTTATTCCCGGCGTGGAAATTTCCACGGTCTGGGAAAATCATGAAATTCATATTGTCGGGCTGAATATTGATATTACTCATCCGCTAATGTGTGAGtt              <  1:736071/149‑1 (MQ=255)                                                                                                                                gCAATCGCGCCAGCAAGAGAGGAAATTTCACGTTCGGGACTGGCGTTGAATCTTATTCCCGGCGTGGAAATTTCCACGGTCTGGGAAAATCATGAAATTCATATTGTCGGGCTGAATATTGATATTACTCATCCCGTAATGTGTGAGtt              >  1:144257/1‑149 (MQ=255)                                                                                                                                 cAATCGCGCCAGCAAGAGAGGAAATTTCACGTTCGGGACTGGCGTTGAATCTTATTCCCGGCGTGGAAATTTCCACGGTCTGGGAAAATCATGAAATTCATATTGTCGGGCTGAATATTGATATTACTCATCCGCTAAtgtgt                   <  2:698602/143‑1 (MQ=255)                                                                                                                                   aTCGCGCCAGCAAGAGAGGAAATTTCACGTTCGGGACTGGCGTTGAATCTTATTCCCGGCGTGGAAATTTCCACGGTCTGGGAAAATCATGAAATTCATATTGTCGGGCTGGATATTGATATGACTCATCCGCTAAtgtgtgt                 <  2:609519/143‑2 (MQ=255)                                                                                                                                   aTCGCGCCAGCAAGAGAGGAAATTTCACGTTCGGGACTGGCGTTGAATCTTATTCCCGGCGTGGAAATTTCCACGGTCTGGGAAAATCATGAAATTCATATTGTCGGGCTGAATATTGATATTACTCATCCGCTAATGTGTGa                 <  2:475230/143‑1 (MQ=255)                                                                                                                                    tCGCGCCAGCAAGAGAGGAAATTTCACGTTCGGGACTGGCGTTGAATCTTATTCCCGGCGTGGAAATTTCCACGGTCTGGGAAAATCATGAAATTCATATTGTCGGGCTGAATATTGATATTACTCATCCGCTAATGGGTGAGTTCCTc          >  1:817069/1‑149 (MQ=255)                                                                                                                                            gCAAGAGAGGACATTTCACGTTCGGGACTGGCGTTGAATCTTATTCCCGGCGTGGAAATTTCCACGGTCTGGGAAAATCATGAAATTCATATTGTCGGGCTGAATATTGATATTACTCATCCGCTAATGTGTGAGTTCCTCGCgcagca  <  1:712774/149‑1 (MQ=255)                                                                                                                                             cAAGGGAGGAAATTTCACGTTCGGGACTGGCGTTGAATCTTATTCCCGGCGTGGAAATTTCCACGGTCTGGGAAAATCATGAAATTCATATTGTCGGGCTGAATATTGATATTACTCATCCGCTAATGTGTGAGTTCCTcgcg       <  2:290319/143‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                             AGTGATTTACGACCTGCACAGCCATACCACAGCTTCCGATGGCTGCCTGACGCCAGAAGCATTGGTGCACCGTGCAGTCGAGATGCGCGTCGGCACCCTGGCGATCACCGACCATGACACCACAGCTGCAATCGCGCCAGCAAGAGAGGAAATTTCACGTTCGGGACTGGCGTTGAATCTTATTCCCGGCGTGGAAATTTCCACGGTCTGGGAAAATCATGAAATTCATATTGTCGGGCTGAATATTGATATTACTCATCCGCTAATGTGTGAGTTCCTCGCGCAGCA  >  CP009273/1317497‑1317784

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.