| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 4,390,205 | G→T | 52.5% | G34V (GGG→GTG) | hfq → | global sRNA chaperone; HF‑I, host factor for RNA phage Q beta replication |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 4,390,205 | 0 | G | T | 52.5% | ‑1.8 / 90.4 | 77 | G34V (GGG→GTG) | hfq | global sRNA chaperone; HF‑I, host factor for RNA phage Q beta replication |
| Reads supporting (aligned to +/- strand): ref base G (12/24); new base T (14/26); total (26/51) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.49e-01 | |||||||||||
ATCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAACGTGTTCCAGTTTCTATTTATTTGGTGAATGGTATTAAGCTGCAAGGGCAAATCGAGTCTTTTGATCAGTTCGTGATCCTGTTGAAAAACACGGTCAGCCAGATGGTTTACAAGCACGCGATTTCTACTGTTGTCCCGTCTCGCCCGGTTTCTCATCACAGTAACAACGCCGGTGGCGGTACCAGCAGTAACTA > CP009273/4390060‑4390352 | aTCGAACGGTCCAAAGTACAAAGAAGCATATAAGGAACAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAACGTGTTCCAGTTTCTATTTATTTGGTGAATGGTATTAAGCTGCAAGTGCa < 1:15330/149‑1 (MQ=255)aTCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAACGTGTTCCAGTTTCTATTTATTTGGTGAATGGTATTAAGCTGCAAGTGCa < 1:379017/149‑1 (MQ=255) gAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAACGTGTTCCAGTTTCTATTTATTTGGTGAATGGTATTAAGCTGCAAGTGCAAAt < 1:1277928/149‑1 (MQ=255) aGGTTTAAAGTCAAAAATTGCATATAAGGGAAAGAGCGCATGGATAGGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAACGTGTTCCAGTTTCTATTTATTTGGTGAATGGTATTAAGCTGCAAGGGCAAATCGa < 1:594173/149‑1 (MQ=255) ggTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAACGTGTTCCAGTTTCTATTTATTTGGTGAATGGTATTAAGCTGCAAGGGCAAATCGAg < 1:1195706/149‑1 (MQ=255) ttCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAACGTGTTCCAGTTTCTATTTATTTGGTGAATGGTATTAAGCTGCAAGGGCAACTCGAGTc > 1:40964/1‑149 (MQ=255) ttCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAACGTGTTAGAGTTTCTCTTTATTTGGTGAATGGTATTAAGCTGCAAGTGCAAAt > 2:259200/1‑143 (MQ=255) tACAACTCAGCAGATAAGGAAAAGAGATAATGGCCAAGGGGCAATCTTTACACGATCCGTTCCTGAACGCACTGCGTCGGGAACGTGTTCCAGTTTCTATTTATTTGGTGAATGGTATTACGCTGCAAGGGCAAATCGAGTCTTTTGAt < 1:317439/149‑1 (MQ=255) tACAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAACGTGTTCCAGTTTCTATTTATTTGGTGAATGGTATTAAGCTGCAAGTGCAAATCGAGTCTTTTGAt < 1:984623/149‑1 (MQ=255) aaTAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAACGTGTTCCAGTTTCTATTTATTTGGTGAATGGTATTAAGCTGCAAGGGCAAATCGAGTATTTTg > 2:424329/1‑143 (MQ=255) tAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAACGTGTTCCAGTTTCTATTTATTTGGTGAATGGTATTAAGCTGCAAGGGCAAATCGAGTCTTTTGAt < 2:90761/143‑1 (MQ=255) cATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAACGTGTTCCAGTTTCTATTTATTTGGTGAATGGTATTAAGCTGCAAGGGCAAATCGAGTCTTTTGATCAGTTCGTGa > 1:1250562/1‑149 (MQ=255) taAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAACGTGTTCCAGTTTCTATTTATTTGGTGAATGGTATTAAGCTGCAAGGGCAAATCGAGTCTTTTGATCAGTTCGt > 2:1037061/1‑143 (MQ=255) aGGAGACGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGAACTGCGTCGGGGACGTGTTCCAGTTTCTATTTATTTGGTGAATGGTATTAAGCTGCGAGTGCAAATCGAGTCTTTTGATCAGTTCGTGATCCTGt > 1:382208/1‑149 (MQ=255) aGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAACGTGTTCCAGTTTCTATTTATTTGGTGAATGGTATTAAGCTGCAAGTGCAAATCGAGTCTTTTGATCAGTTCGTGa < 2:947319/143‑1 (MQ=255) ggAAAAGAGAGAATGGCTAAGGGCCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAACGTGTTCCAGTTTCTATTTATTTGGTGAATGGTATTAAGCTGCAAGTGCAAATCGAGTCTTTTGATCAGTTCGTGATCCTGtt < 1:833926/149‑1 (MQ=255) ggAAAAGAGAGAATGGCGAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAACGAGTTCCAGTTTCTAGTTATTTGTTGAATGGTATTAAGCTGCAAGGGCAAATCGAGTCTTTTGATCAGGTCGTGAATCTGtg > 1:711376/1‑148 (MQ=255) gggcagaTGGCTAAGGGGCAATCTTTACAAGGTCCGTTCCTGAACGCACTGCGTCGGGAACGTGTTCCAGTTTCTATTTATTTGGTGAATGGTATTAAGCTGCAAGTGCAAATCGAGTCTTTTGATCAGTTCGTGATCCTGtt < 2:201532/137‑1 (MQ=255) gatggaATGGCTGAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAACGTGTTCCAGTTTCTATTTATTTGGTGAATGGTATTAAGCTGCAAGGGCAAATCGAGTCTTTTGATCAGTTCGTGATCCTGtt < 2:178809/139‑1 (MQ=255) gaggggaTGGCGAAGGGGCAAGCTTTACAAGGTCCGTTCCTGAACGCACTGCGTCGGGAACGTGTTCCAGTTTCTATTTATTTGGTCAATGGTCTTAAGCGGCAAGTGCAAATCGAGTCTTTTGATCAGTTCGTGATCCTGtt < 2:735407/137‑1 (MQ=255) agaATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAACGTGTTCCAGTTTCTATTTATTTGGTGAATGGTATTAAGCTGCAAGTGCAAATCGAGTCTTTTGATCAGTTCGTGATCCTGTTGaa < 2:1063657/143‑1 (MQ=255) agaATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAACGTGTTCCAGTTTCTATTTATTTGGTGAATGGTATTAAGCTGCAAGTGCAAATCGAGTCTTTTGATCAGTTCGTGATCCTGTTGAAAAacac < 1:428465/149‑1 (MQ=255) ggacggCTAAGGGGCAACCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAACGTGTTCCAGTTTCTATTTATTTGGTGAATGGTATTAAGCTGCAAGTGCAAATCGAGTCTTTTGATCAGTTCGTGATCCTGTTGAAAAACACg < 1:717743/145‑1 (MQ=255) gaATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAACGTGTTCCAGTTTCTATTTATTTGGTGAATGGTATTAAGCTGCAAGGGCAAATCGAGTCTTTTGATCAGTTCGTGATCCTGTTGAAAAACACg < 1:139082/149‑1 (MQ=255) gaATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAACGTGTTCCAGTTTCTATTTATTTGGTGAATGGTATTAAGCTGCAAGGGCAAATCGAGTCTTTTGATCAGTTCGTGATCCTGTTGAAAAACACg < 1:987677/149‑1 (MQ=255) gaATGGCCAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAACGTGTTCCAGTTTCTATTTATTTGGTGAATGGTATTAAGCTGCAAGGGCAAATCGAGTCTTTTGATCAGTTCGTGATCCTGTTGAAAAACACg < 1:544977/149‑1 (MQ=255) aaTGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAACGTGTTCCAGTTTCTATTTATTTGGTGAATGGTATTAAGCTGCAAGGGCAAATCGAGTCTTTTGATCAGTTCGTGATCCTGTTGAAAAACACgg < 1:76371/149‑1 (MQ=255) aaTGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAACGTGTTCCAGTTTATATTTATTTGGTGAATGGTATTAAGCTGCAAGGGCAAATCGAGTCTTTTGATCAGTTCGTGATCCTTTTGAAAAACACgg > 1:326705/1‑149 (MQ=255) aTGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAACGTGTTCCAGTTTCTATTTATTTGGTGAATGGTATTAAGCTGCAAGGGCAAATCGAGTCTTTTGATCAGTTCGTGATCCTGTTGAAAAACACGGt < 1:1219427/149‑1 (MQ=255) ggCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAACGTGTTCCAGTTTCTATTTATTTGGTGAATGGTATTAAGCTGCAAGTGCAAATCGAGTCTTTTGATCAGTTCGTGATCCTGTTGAAAAaca < 2:52494/143‑1 (MQ=255) tAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAACGTGTTCCAGTTTCTATTTATTTGGTGAATGGTATTAAGCTGCAAGTGCAAATCGAGTCTTTTGATCAGTTCGTGATCGTGTTGCAAAGCACGGTCAGcc > 1:149715/1‑149 (MQ=255) aaGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAACGTTGTCCAGTTTCTATTTATTTGGTGAATGGTATTAAGCTGCAAGGGCAAATCGAGTCTTTTGATCAGTTCGTGATCCTGTTGAAAAACACGGt > 2:744739/1‑143 (MQ=255) aaGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAACGTGTTCCAGTTTCTATTTATTTGGTGAATGGTATTAAGCTGCAAGGGCAAATCGAGTCTTTTGATCAGTTCGTGATCCTGTTGAAAAACACGGt > 2:664857/1‑143 (MQ=255) aaGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAACGTGTTCCAGTTTCTATTTATTTGGTGAATGGTATTAAGCTGCAAGGGCAAATCGAGTCTTTTGATCAGTTCGCGATCCTGTTGAAAAACACGGt > 2:309213/1‑143 (MQ=255) ggggCAATCTTTACAAGATCCGTTCCGGAACGCACTGCGTCGGGAACGTGTTCCAGTTTCTATTTATTTGGTGAATGGTATTAAGCTGCAAGTGCAAATCGAGTCTTTTGATCAGTTCGTGATCCTGTTGAAAAACACGGTCAGCCAGa < 1:1175115/149‑1 (MQ=255) gCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAACGTGTTCCAGTTTCTATTTATTTGGTGAATGGTATTAAGCTGCAAGTGCAAAGCGAGTCTTTTGATCAGTTCGTGATCCTGTTGAAAAACACGGTCAGCCAGATgg > 1:430916/1‑149 (MQ=255) gCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAACGTGTTCCAGTTTCTATGTATTTGGTGAATGGTATTAAGCTGCAAGTGCAAATAGAGTCTTTTGATATGTTCGTGATCCTGTTGAAAAACACGGTCAGcc > 2:1099137/1‑143 (MQ=255) aaTCTTAACAAGATCCGTTCATGAACGCACTGCGTCGGGAACGTGTTCCAGTTTCTATTTATTTGGTGAATGGTATTAAGCTGCAAGTGCCAATCCAGTTTTTTGATCAGTTCGTGATCCTGGTGAAAAACACGGTCAGCCAGATGGtt < 1:1224868/149‑1 (MQ=255) aTCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAACGTGTTCCAGTTTCTATTTATTTGGTGAATGGTATTAAGCTGCAAGTGCAAATCGAGTCTTTTGATCAGTTCGTGATCCTGTTGGAAAACACGGTCCGCCAGa > 2:945962/1‑143 (MQ=255) aTCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAACGTGTTCCAGTTTCTATTTATTTGGTGAATGGTATTAAGCTGCAAGTGCAAATCGAGTCTTTTGATCAGTTCGTGATCCTGTTGAAAAAAACGATGAGCCaaa > 2:143829/1‑141 (MQ=255) tCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAACGTTTTCCAGTTTCTATTTATTTGGTGAATGGTATTAAGCTGCAAGTGCAAATCGAGTCTTTTGATCAGTTCGTGATCCTGTTGAAAAACACGGTCAGCCAGAt < 2:594909/143‑1 (MQ=255) cTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAACGTGTTCCAGTTTCTATTTATTTGGTGAATGGTATTAAGCTGCAAGTGCAAATCGAGTCTTTTGATCAGTTCGTGATACTGTTGAAAAACACGGTCAGCCAGATGGTTTAc > 1:563537/1‑149 (MQ=255) aCAAGATCCGTTCCTGAACGCACTGCGTCGGGAACGTGTTCCAGTTTCTATTTATTTGGTGAATGGTATTAAGCTGCAAGGGCAAATCGAAACTGTTGGGCGGTTTTTGATCCTTTTGAAAACCACGGTCAGCCAGATGGttt > 2:511728/1‑143 (MQ=255) aCAAGATCCGTTCCTGAACGCACGGCGTCGGGAACGTGTTCCAGTTTCTATTTATTTGGTGAATGGTATTAAGCTGCAAGTGCAAATCGAGTCTTTTGATCAGTTCGTGATCCTGTTGAAAAACACGGTCAGCCAGATGGTTTACAAGc < 1:280863/149‑1 (MQ=255) cAAGATCCGTTCCTGAACGCACTGCGTCGGGAACGTGTTCCAGTTTCTATTGATTTGGTGAATGGTATTAAGCTGCAAGTGCAAACCGAGTCTTTTGAGCAGATCGTGATCCTGTTGAAAAACACGGTCAGCCAGAAAGtttg > 2:35556/1‑142 (MQ=255) aGATCCGTTCCTGAACGCACTGCGTCGGGAACGTGTTCCAGTTTCTATTTATTTGGTGAATGGTATTAAGCTGCAAGTGCAAATCGAGTCTTTTGATCAGTTCGTGATCCTGTTGAAAAACACGGTCAGCCAGATGGTTTACAAGCAcg < 1:774117/149‑1 (MQ=255) aGATCCGTTCCTGAACGCACTGCGTCGGGAACGTGTTCCAGTTTCTATTTATTTGGTGAATGGTATTAAGCTGCAAGTGCAAATCGAGTCTTTTGATCAGTTCGTGATCCTGTTGAAAAACACGGTCAGCCAGATGGTTTACAAGCAcg < 1:1240576/149‑1 (MQ=255) aGACCCGTTCCTGAACGCACTGCGTCGGGAACGTGTTCCAGTTTCTATTTATTTGGTGAATGGTATTAAGCTGCAAGTGCAAATCGAGTCTTTTGATCAGTTCGTGATCCTGTTGAAAAACACGGTCAGCCAGATGGTTTACa < 2:361229/143‑1 (MQ=255) gATCCGTTCCTGAACGCACTGCGTCGGGAACGTGTTCCAGTTTCTATTTATTTGGTGAATGGTATTAAGCTGCAAGTGCAAATCGAGTCTTTTGATCAGTTCGTGATCCTGTTGAAAAACACGGTCAGCCAGATGGTTTACaa > 2:704142/1‑143 (MQ=255) aTCCGTTCCTGAACGCACTGCGTCGGGAACGTGTTCCAGTTTCTATTTATTTGGTGAATGGTATTAAGCTGCAAGGGCAAATCGAGTCTTTTGATCAGTTCGTGATCCTGTTGAAAAACACGGTCAGCCAGATGGTTTACAAGCAcgcg > 1:939276/1‑149 (MQ=255) ccGTTCCTGAACGCACTGCGTCGGGAACGTGTTCCAGTTTCTATTTATTTGGTGAATGGTATTAAGCTGCAAGGTCAAATCGAGTCTTTTGATCAGTTCGTGATCCTGTTGAAAAACACGGTCAGCCAGATGGTTTACAAGCACGCGAt < 1:1117540/149‑1 (MQ=255) ggtCCTGAACGCAGTGCGTCGCGAACGTGTTCCAGTTTCTATTTATTTGGTGAATGGCATTAAGCCGCGAGAGCCTTGCGGTTCCCGGTTTCAGTTTGTAAAAAAAAAAAAAAACACGGTCAGCCAGATGGTTTACAAGCAcg < 2:1102964/141‑1 (MQ=255) gTTCCTGAACGCGGCGCGGCGGGAACGTGTTCCAGTTTCTATTTATTTGGTGAATGGTATTAAGCTGCAAGTGCAAATCGAGTCTTTTGATCAGTTCGTGATCCTGTTGAAAAACACGGTCAGCCAGATGGTTTACAAGCAcg < 2:107672/143‑1 (MQ=255) gTTCCTGAACGAACTGCGTCGGGAACGTGTTCCAGTTTCTATTTATTTGGTGAATGGTATTAAGCTGCAAGGGCAAATCGAGTCTTTTGATCAGTTCGTGATCCTGTTGAAAAACACGGTCAGCCAGATGGTTTACAAGCAcg < 2:697069/143‑1 (MQ=255) aagacagcatGCGTCGGGAACGTGTGCCAGTTTCTATTTATTTGGTGAATGGTATTAAGCTGCAAGGGCAAATCGAGTCTTTTGATCAGTTCGGGATCCTGTTGAAAAACACGGTCAGCCAGATGGTTTACAAGCACGCGATTTCTACt < 1:770296/140‑1 (MQ=255) gCACTGCGTCGGGAACGTGTTCCAGTTTCTATTTATTTGGTGAATGGTATTAAACTGCAAGGGCAAATCGAGTCTTTTGATCAGTTCGTGATCCTGTTGAAAAACACGGTCAGCCAGATGGTTTACAAGCACACGATTTCTACtgttgt > 1:1015365/1‑149 (MQ=255) cGGGAACGTGTTCCTGTTTCTAGTTATTTGGTTAATGGTATTAAGCTGCAAGGGCAAATCGAGTCTTTTGATCAGTTCGTGATCCTCTTCAAAACCACGGTTAGCCAGATGGTTTACAAGCACGCGACTTCTACTGTTGTccc < 2:623404/143‑1 (MQ=255) gggAACGTGTTCCAGGTTCTATTTATTTGGTGAATGGTATTAAGCTGCAAGTGCAAATCGAGTCTTTTGATCAGTTCGTGATCCTGTTGAAAAACACGGTCAGCCAGATGGTTTACAAGCACGCGATTTCTACTGTTGTCCCg < 2:581248/143‑1 (MQ=255) gtTCCAGTTTCTATTTATTTGGTGAATGGTATTAAGCTGCAAGGGCAAATCGAGACTTTTGATCAGTTCGTGATCCTGTTGAAAAACACGGTCAGCCAGATGGTTTACAAGCACGCGATTTCTACTGTTGTCCCGTCTCGCCCGGTTtc < 1:493512/149‑1 (MQ=255) gcttCTAGTTATTTGGTGAATGGTATTAAGCTGCAAGGGCAAACCGAGTCTTTTGATCAGTTCGTGATCCTGTTGAAATACACGGTCAGCCAGATGGTTTACAAGCACGCGATTTCGACTGTTGTCCCGTCTCGCCCGGTTTCtcatca < 1:289427/147‑1 (MQ=255) tatgtattTGGCGAATGGTATTAAGCTGCAACTGCAAATCGAGTCTTTTGCTCAGTTCGTGATCCTGTTGAAAAACACGGTCAGCCAGATGGTTTACAAGCACGCGATTTCTACTGTTGTCCCGTCTCGCCCGGTTTCtcatc < 2:226702/143‑1 (MQ=255) attgagttGGTGAGTGGTGTTAAGCTGCAAGGGCAAATCGAGTCTTTTGCTCAGTTGGGGTTCTTGTGGAGAGACACGGTCAGCCAGATGGTTTACAAGCACGCGATTTCTACTGTTGTCCCGTCTCGCCCGGTTTCtcatca < 2:680632/137‑1 (MQ=255) ttattgGGTGAATGGTATTAAGCGGCAAGGGCAAATCGGGTCTTTTGATCAGTTCGGGATCCTGTTGAAAAACACGGTCAGCCAGATGGTTTACAAGCACGCGATTTCTACTGTTGTCCCGTCTCGCCCGGTTTCTCATcaca < 2:638038/143‑1 (MQ=255) atttGGTGAATGGTATTAAGCTGCAAGTGCAAATCGAGTCTTTTGATCAGTTCGTGATCCTGTTGAAAAACACGGTCAGCCAGATGGTTTACAAGCACGCGATTTCTACTGTTGTCCCGTCTCGCCCGGTTTCTCATCACAGTaacaac > 1:168680/1‑149 (MQ=255) tttGGTGAATGGTATTAAGCTGCAAGTGCAAATCGAGTCTTTTGATCAGTTCGTGATCCTGTTGAAAAACACGGTCAGCCAGATGGTTTACAAGCACGCGATTTCTACTTTTGTCCCGTCTCGCCCGGTTTCTCATCACATTa > 2:668089/1‑143 (MQ=255) ggTGAATGGTATTAAGCTGCAAGTGCAAATCGAGTCTTTTGATCAGTTCGTGATCCTGTTGAAAAACACGGTCAGCCAGATGGTTTACAAGCACGCGATTTCTACTGTTGTCCCGTCTCGCCCGGTTTCTCATCACAGTAACAACGCCg < 1:776918/149‑1 (MQ=255) gAATGGTATTAAGCTGCAAGTGCAAATCGAGTCTTTTGATCAGTTCGTGATCCTGTTGAAAAACACGGTCAGCCAGATGGTTTACAAGCACGCGATTTCTACTGTTGTCCCGTCTCGCCCGGTTTCTCATCACAGTAACAACGCCGGTg > 1:643422/1‑149 (MQ=255) aaTGGTATTAAGCTGCAAGGGCAAATCGAGTCTTTTGATCAGTTCGTGATCCTGTTGAAAAACACGGTCAGCCAGATGGTTTACAAGCACGCGATTTCTACTGTTGTCCCGTCTCGCCCGGTTTCTCATCACAGTAACAACGCCGGTgg < 1:1096601/149‑1 (MQ=255) tGGTATTAAGCTGCAAGTGCAAATCGAGTCTTTTGATCAGTTCGTGATCCTGTTGAAAAACACGGTCAGCCAGATGGTTTACAAGCACGCGATTTCTACTGTTGTCCCGTCTCGCCCGGTTTCTCATCACAGTAACAACGCCGGTGGCg < 1:384674/149‑1 (MQ=255) tGGTATTAAGCTGCAAGTGCAAATCGAGTCTTTTGATCAGTTCGTGATCCTGTTGAAAAACAAGGTAAGCCAGATGGTTTACAAGCACGCGATTTCTACTGTTTTCCCGTCTCGCCCGGTTTCTCATCACAGTAACAACGCCg > 2:1041423/1‑143 (MQ=255) gggTAGTAAGCTGCAAGTGCAACTCGAGTCTTTTGATCAGTTCGTGATCCTGTTGAAAAACACGGTCAGCCAGATGGTTTACAAGCACGCGATTTCTACTGTTGTCCCGTCTCGCCCGGTTTCTCATCACAGTAACAACGCCGGTGGCg < 1:245199/148‑1 (MQ=255) gTATTAAGCTGCAAGGGCAAATCGAGGCTTTTGATCAGTTCGTGATCCTGTTGAAAAACACGGTCAGCCAGATGGTTTACAAGCACGCGATTTCTACTGTTGTCCCGTCTCGCCCGGTTTCTCATCACAGTAACAACGCCGGTGGCGGt < 1:1096149/149‑1 (MQ=255) ttagtgtGCAAGTGCGAATCGAGTCTTTTGATCAGTTCGTGATCCTGTTGAAAAACACGGTCAGCCAGATGGTTTACAAGCACGCGATTTCTACTGTTGTCCCGTCTCGCCCGGTTTCTCATCACAGTAACAACGCCGGTGGc < 2:230096/137‑1 (MQ=255) tAAGCTGCAAGGTCAAATCGAGTCTTTTGATCAGTTCGTGATCCTGTTGAAAAACACGGTCAGCCAGATGGTTTACAAGCACGCGATTTCTACTGTGGTCCCGTCTCGCCCGGTTTCTCATCACAGTCACAACGCCGGTGGCg < 2:623478/143‑1 (MQ=255) tAAGCTGCAAGGGCAAATCGAGTCTTTTGATCAGTTCGTGATCCTGTTGAAAAACACGGTCAGCCAGATGGTTTACAAGCACGCGATTTCTACTGTTGTCCCGTCTCGCCCGGTTTCTCATCACAGTAACAACGCCGGTGGCg < 2:99470/143‑1 (MQ=255) tGCAAGGGCAAATCGAGTCTTTTGATCAGTTCGTGATCCTGTTGAAAAACACGGTCAGCCAGATGGTTTACAAGCACGCGATTTCTACTGTTGTCCCGTCTCGCCCGGTTTCTCATCACAGTAACAACGCCGGTGGCGGTAcc < 2:539159/143‑1 (MQ=255) aGGGCAAATCGAGTTTTTGGATCAGTTCGTGATCCTGTTGAAAAACACGGTCAGCCAGATGGTTTACAAGCACGCGATTTCTACTGTTGTCCCGTCTCGCCCGGTTTCTCATCACAGTAACAACGCCGGTGGCGGTACcagca < 2:507538/143‑1 (MQ=255) gggCAAATCGAGTCTTTTGATCAGTTCGTGATCCTGTTGAAAAACACGGTCAGCCAGATGGTTTACAAGCAAGCGATTTCTAATGTTGTCCCGTCTCGACCGGTTTCTCATCACCGTAACAACGCCGGTGGGGGTCCAAGCCGTGACTa > 1:268149/1‑149 (MQ=255) | ATCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAACGTGTTCCAGTTTCTATTTATTTGGTGAATGGTATTAAGCTGCAAGGGCAAATCGAGTCTTTTGATCAGTTCGTGATCCTGTTGAAAAACACGGTCAGCCAGATGGTTTACAAGCACGCGATTTCTACTGTTGTCCCGTCTCGCCCGGTTTCTCATCACAGTAACAACGCCGGTGGCGGTACCAGCAGTAACTA > CP009273/4390060‑4390352 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |