New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 1515197	33 (0.470)	2 (0.030)	3/254	NT	5.9%	intergenic (+13/+23)	mcbR/yncD	colanic acid and biofilm gene transcriptional regulator, MqsR‑controlled/putative iron outer membrane transporter
	?	CP009273	= 1515203	33 (0.500)					intergenic (+19/+17)	mcbR/yncD	colanic acid and biofilm gene transcriptional regulator, MqsR‑controlled/putative iron outer membrane transporter

GAGCATATAGAAAACTATCATCTGTTACTCGCTGCGTTAAAAGCAAAAGACAAAGAGGGATGCAGACATTGTCTTGCTGAAATTATGCAACAAAATATTGCTATTTTATACCAGCAATACAATCGTTAAAGTAAATGCCCGGCAAATACCGGGCATCAAGGTAATTACTCAAATCTCCACGCAATATTCATGCCGACACCATAATTTCGTCCGGGCGAAGGTTCGTAATATCGCCCGTTTGACTCATTGACAATGACAGAACCAACGTATTCTTTATCGAATAAATTATCGA  >  CP009273/1515056‑1515347                                                                                                                                                    |                                                                                                                                                 gAGCATATAGAAAACTATCATCTGTTACTCGCTGCGTTAAAAGCAAAAGACAAAGAGGGATGCAGACATTGTCTTGCTGAAATTATGCAACAAAATATTGCTATTTTATACCAGCAATACAAACGCTAGAGTAAATGCCCGGCAAATAc                                                                                                                                                 <  1:1142647‑M2/149‑2 (MQ=255)      tataGAAAACTATCATCTGTTACTCGCTGCGTTAAAAGCAAAAGACAAAGAGGGATGCAGACATTGTCTTGCTGAAATTATGCAACAAAATATTGCTATTTTATACCAGCAATACAATCGTTAAAGTAAATGCCCGGCAAATAccgggc                                                                                                                                            <  1:1067381‑M2/149‑7 (MQ=255)      tataGAAAACTATCATCTGTTACTCGCTGCGTTAAAAGCAAAAGACAAAGAGGGATGCAGACATTGTCTTGCTGAAATTATGCAACAAAATATTGCTATTTTATACCAGCAATACAATCGTTAAAGTAAATGCCCGGCAAATAccgggc                                                                                                                                            <  1:209594‑M2/149‑7 (MQ=255)        taGAAAACTATCATCTGTTACTCGCTGCGTTAAAAGCAAAAGACAAAGAGGGATGCAGACATTGTCTTGCTGAAATTATGCAACAAAATATTGCTATTTTATACCAGCAATACAATCGTTAAAGTAAATGCCCGGCAAATAccgggcat                                                                                                                                          <  1:867056‑M2/149‑9 (MQ=255)            aaaCTATCATCTGTTCATCGTGGTGTGAAAAGCAAAAGACAAAGAGGGATGCAGACATTGTCTTGCTGAAATTATGCAACAAAATATTGCTATTTTATACCAGCAATACAATCGTTAAAGTAAATGCCCGGTATTTGccgggcatttac                                                                                                                                      >  1:352564‑M2/1‑137 (MQ=255)              aCTATCATCTGTTACTCGCTGCGTTAAAAGCAAAAGACAAAGAGGGATGCAGACATTGTCTTGCTGAAATTATGCAACAAAATATTGCTATTTTATACCAGCAATACAATCGTTAAAGTAAATGCCCGGCAAATACCGGGCATCAAGGt                                                                                                                                    >  1:867783/1‑149 (MQ=255)                   cttctcTTACTCGCGGCGTTAAAAGCAAAAGACAAAGAGGGATGCAGACATTGTCTTGCTGAAATTATGCAACAAAATATTGCTATTTTATACCAGCAATACAATCGTTAAAGTAAATGCCCGGCAAATACCGGGCATCAAGGTAATTa                                                                                                                               <  1:413401/147‑1 (MQ=255)                   catcTGTTACTCGCTGCGTTAAAAGCAAAAGACAAAGAGGGATGCAGACATTGTCTTGCTGAAATTATGCAACAAAATATTGCTATTTTATACCAGCAATACAATCGTTAAAGTAAATGCCCGGCAAATACCGGGCATCAAGGTAATTa                                                                                                                               <  1:706280/149‑1 (MQ=255)                            cTCGCTGCGTTAAAAGCAAAAGACAAAGAGGGATGCAGACATTGTCTTGCTGAAATTATGCAACAAAATATTGCTATTTTATACCAGCAATACAATCGTTAAAGTAAATGCCCGGCAAATACCGGGCATCAAGGTAATTACTCAAAtct                                                                                                                      >  1:977897/1‑149 (MQ=255)                                 tGCGTTAAAAGCAAAAGACAAAGAGGGATGCAGACATTGTCTTGCTGAAATTATGCAACAAAATATTGCTATTTTATACCAGCAATACAATCGTTAAAGTAAATGCCCGGCAAATACCGGGCATCAAGGTAATTACTCAAAtc                                                                                                                       >  2:865246/1‑143 (MQ=255)                                   cGTTAAAAGCAAAAGACAAATAGGGAGGCAGACATTGTCTTGCTGAAATTATGCAACAAAATATTGCTATTTTATACCAGCAATACAATCGTTAAAGTAAATGCCCGGCAAATATCGGGCATCAATGTAATTACTCAAAtctc                                                                                                                     <  2:659325/143‑1 (MQ=255)                                    gTTAAAGGCAAAAGACAAAGAGGGATGCAGACATTGTCTTGCTGAAATTATGCAACAAAATATTGCTATTTTATACCAGCAATACAATCGTTAAAGTAAATGCCCGGCAAATACCGGGCATCAAGGTAATTACTCAAATCTcc                                                                                                                    <  2:912184/143‑1 (MQ=255)                                         aaGCAAAAGACAAAGAGGGATGCAGACATTGTCTTGCTGAAATTATGCAACAAAATATTGCTATTTTATACCAGGAATACAATCGTTAAAGTAAATTCCCGGCAAATACCGGGCATCAAGGTAAGTACACAAATCTccccaca                                                                                                               >  2:114203/1‑138 (MQ=255)                                           gCAAAAGACAAGGATGGATGCAGACATTGTCTTGCTGCAATTATGCAACAAAATATTGCTATTTTATACCAGCAATACAATCGTTAAAGTAAATGCCCGGCAAATACCGGGCATCAAGGTAATTACTCAAATCTCCACGCAat                                                                                                             <  2:678350/143‑1 (MQ=255)                                                      agagGGATGCAGACATTGTCTTGCTGAAATTATGCAACAAAATATTGCTATTTTATACCAGCAATACAATCGTTAAAGTAAATGCCCGGTATTTGccgggcatttactttaacgattgtattgctggtataaaatagcaatattttgtt                                                                                            >  1:11169‑M2/1‑95 (MQ=255)                                                         gggATGCAGACATTGGCTTGCTGAAATTATGCAACAAAATATTGCTATTTTATACCAGCAATACAATCGTTAAAGTAAATGCCCGGCAAATACCGGGCATCAAGGTAATTACTCAAATCTCCACGCAATATTCATGCCGACACCATAAt                                                                                         <  1:771640/149‑1 (MQ=255)                                                               cAGACATTGTCTTGCTGAAATTATGCAACAAAATATTGCTATTTTATACCAGCAATAAACACGAAAAAGTAAATGCCCGGCAAATACCGGGCATCAAGGTAATTACTCAAATCTCCACGCAATATTCATGCCGACACCATAATTTCGTc                                                                                   >  1:572248/1‑149 (MQ=255)                                                                aGACATTGTCTTGCTGAAATTATGCAACAAAATATTGCTATTTTATACCAGCAATACAATCGTTAAAGTAAATGCCCGGCAAATACCGGGCATCAAGGTAATTACTCAAATCTCCACGCAATATTCATGCCGACACCATAAtt                                                                                        <  2:374383/143‑1 (MQ=255)                                                                   cATTGTCTTGCTGAACTTATGCAACAAAATATTGCCATTTTATACCAGCAATACAATCGTTAAAGTAAATGCCCGGCAAATACCGGGCATCAAGGTAATTACTCAAATCTCCACGCAATATTCATGCCGACACCATAATTTCGTCCggg                                                                               <  1:10734/149‑1 (MQ=255)                                                                   cATTGTCTTGCTGAAATTATGCAACAAAATATTGCTATTTTATACCAGCAATACAATCGTTAAAGTAAATGCCCGGCAAATACCGGGCATCAAGGTAATTACTCAAATCTCCACGCAATATTCATGCCGACACCATAATTTCGTCCggg                                                                               <  1:513140/149‑1 (MQ=255)                                                                        tCTTGCTGAAATTATGCAACAAAATATTGCTATTTTATACCAGCAATACAATCGTTAAAGTAAATGCCCGGCAAATACCGGGCATCAAGGTAATTACTCAAATCTCCACGCAATATTCATGCCGACACCATAATTTCGTCCGGGCGAAg                                                                          >  1:1072667/1‑149 (MQ=255)                                                                           tGCTGAAATTATGCAACAAAATATTGCTATTTTATACCAGCAATACAATCGTTAAAGTAAATGCCAGGCAAATAcggggcatttactttaacgattgtattgctggtataaaatagaaatagtgggttggctactttcagtcgaacgag                                                                       <  1:424829‑M2/149‑76 (MQ=255)                                                                              tGAAATTATGCAACAAAATATTGCTATTTTATACAAGCAATACAATCGTTAAAGTAAATGCCCGCCAAATACCGGGCATCAAGGTAATTAATAAAATCTCCACGCAATATTCATGCCGACACCATAATTTATTCCGGGCGAAg                                                                          >  2:287109/1‑143 (MQ=255)                                                                               gAAATTATGCAACAAAATATTGCTATTTTATCCCAGCAATACAATCGTTAAAGTAAATGGCCGGTAAATACCGGGCGTTAAGGCTATTACTGAGATCTCCACGCAATATTCATGCCGACACCATAATTTCGTCCGGGCGAAgg                                                                         <  2:892391/143‑1 (MQ=255)                                                                                aaaTAATTCAACAAAATATTGCTATTTTATACCAGCAATACAATCGTTAAAGTAAATGCCCGGCAAATACCGGGCATCAAGGTAATTACTCAAATCTCCACGCAATATTCATGCCGACACCATAATTTCGTCCGGGCGAAGGt                                                                        <  2:889381/143‑1 (MQ=255)                                                                                     aTGCAACAAAATATTGCTATTTTATACCAGCAATACAATCGACAAAGTCAATGACAGGGAAATACCGGGCATCAAGGTAATTACTCAAATCTCCACGCAATATTCATGCCGACACCATAATTTCGTCCGGGCGACGGCTCGTa                                                                   >  2:41760/1‑143 (MQ=255)                                                                                              aaTATTGCTATTTTATACCAGCAATACAATCGTTAAAGTAAATGCCCGGCAAATACCGGGCATCAAGGTAATTACTCAAATCTCCACGCAATATTCATGCCGACACCATAATTTCGTCCGGGCGAAGGTTCGTAATATCGCCCGTTTGa                                                    >  1:1149697/1‑149 (MQ=255)                                                                                                 atTGCTATTTTATACCAGCAATACAATCGTTAAAGTAAATGCCCGGCAAATACCGGGCATCAAGGTAATTACTCAAATCTCCACGCAATATTCATGCCGACACCATAATTTCGTCCGGGCGAAGGTTCGTAATATCGCCCGtt                                                       <  2:329696/143‑1 (MQ=255)                                                                                                 atTGCTATTTTATACCAGCAATACAATCGTTAAAGTAAATGCCCGGCAAATACCGGGCATCAAGGTAATTACTCAAATCTCCACGCAATATTCATGCCGACACCATAATTTCGTCCGGGCGAAGGTTCGTAATATCGCCCGtt                                                       <  2:581616/143‑1 (MQ=255)                                                                                                 atTGCTATTTTATACCAGCAATACAATCGTTAAAGTAAATGCCCGGCAAATACCGGGCATCAAGGTAATTACTCAAATCTCCACGCAATATTCATGCCGACACCATAATGTGCTCCGGGCGAAGGTTCGTAATATCGCCCGtt                                                       >  2:1104253/1‑143 (MQ=255)                                                                                                      tATTTTATACCAGCAATACAATCGTTAAAGTAAATGCCCGGCAAATACCGGGCATCAAGGTAATTACTCAAATCTCCACGCAATATTCATGCCGACACCATAATTTCGTCCGGCCGAAGGTTCGTTATATCGCCCGTTTGACt                                                  >  2:455054/1‑143 (MQ=255)                                                                                                        ttttATACCAGCAATACAATCGTTAAAGTAAATGCCCGGCAAATACCGGGCATCAAGGTAATTACTCAAATCTCCACGCAATATTCATGCCGACACCATAATTTCGTCCGGGCGGAGGTTCGTAATAACGCCCGTTTGACTCATTGACa                                          >  1:720698/1‑149 (MQ=255)                                                                                                        ttttATACCAGCAATACAATCGTTAAAGTAAATGCCCGGCAAATACCGGGCATCAAGGTAATTACTCAAATCTCCACGCAATATTCATGCCGACACCATAATTTCGTCCGGGCGAAGGTTCGTAATATCGCCCGTTTGACTCa                                                >  2:531368/1‑143 (MQ=255)                                                                                                              aCCAGCATTAAAATCGTTACAGTAAATGCCCGGCAAATACCGGGCATCAAGGTAATTACTCAAATCTCCACGCAGTATTCATGCCGACACCATAATTTCGTCCGGGCGAAGGTTCGTAATATCGCCCGTTTGACTCATTGACa                                          <  2:762155/143‑1 (MQ=255)                                                                                                               ccAGCAATACAATCGTTAAAGTAAATGCCCGGCAAATACCGGGCATCAAGGTAATTACTCAAATCTCCACGCAATATTCATGCCGACACCATAATTTAGTCCGGGCGAAAGTTCGTAATATCGCCCGTTTGACTCCTTGACaa                                         >  2:572774/1‑143 (MQ=255)                                                                                                                    caTACAATCGTTAAAGTAAATGCCCGGCAAATACCGGGCATCAAGGTAATTACTCAAATCTCCACGCAATATTCATGCCGACACCATAATTTCGTCCGGGCGAAGGTTCGTAATATCGCCCGTTTGACTCATTGACAATGACa                                    <  2:205481/142‑1 (MQ=255)                                                                                                                      tACAATCGTTAAAGTAAAGGCCCGGCAAATACCGGGCATCAAGGTAATTACTCAAATCTCCACGCAATATTCATGCCGACACCATAATTTCGTCCGGGCGAAGGTTCGTAATATCGCCCGTTTGACTCATTGACAATGACAGAACCAAc                            <  1:709136/149‑1 (MQ=255)                                                                                                                              ttAAAGTAAATGCCCGGCAAATACCGGGCATCAAGGTAATTACTCAAATCTCCACGCAATATTCATGCCGACACCATAATTTCGTCCGGGCGAAGGTTCGTAATATCGCCCGTTTGACTCATTGACAATGACAGAACCAACGt                          >  2:603186/1‑143 (MQ=255)                                                                                                                              ttAAAGTAAATGCCCGGCAAATACCGGGCATCAAGGTAATTACTCAAATCTCCACGCAATATTCATGCCGACACCATAATTTCGTCCGGGCGAAGGTTCGTAATATCGCCCGTTTGACTCATTGACAATGACAGAACCAACGGATTCtt                    >  1:1007260/1‑149 (MQ=255)                                                                                                                                         gCCCGGCAAATACCGGGCATCAAGGTAATTACTCAAATCTCCACGCAATATTCATGCCGACACCATAATTTCGTCCGGGCGAAGGTTCGTAATATCGCCCGTTTGACTCATTGACGATGACAGAACCAACGTATTCTTTATCGAATaaa         >  1:436907/1‑149 (MQ=255)                                                                                                                                                aaaTACCGGGCATCAAGGTAATTACTCAAATCTCCACGCAATATTCATGCCGACACCATAATTTCGTCCGGGCGAAGGTTCGTAATATCGCCCGTTTGACTCATTGACAATGACAGAACCAACGTATTCTTTATCGAATAAATTATCGa  <  1:283255/149‑1 (MQ=255)                                                                                                                                                    aCCGGGCATCAAGGTAATGACTCATGGCTCCACGCAATATTTATGCCGACACCATAATTTCGTCCGGGCGAAGGTTCGTAATATCGCTCGTTTGACTCATTGACAATGACAGAACCAACGTATTCTTTATCGAATAAATTATc    <  2:182704/143‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                 GAGCATATAGAAAACTATCATCTGTTACTCGCTGCGTTAAAAGCAAAAGACAAAGAGGGATGCAGACATTGTCTTGCTGAAATTATGCAACAAAATATTGCTATTTTATACCAGCAATACAATCGTTAAAGTAAATGCCCGGCAAATACCGGGCATCAAGGTAATTACTCAAATCTCCACGCAATATTCATGCCGACACCATAATTTCGTCCGGGCGAAGGTTCGTAATATCGCCCGTTTGACTCATTGACAATGACAGAACCAACGTATTCTTTATCGAATAAATTATCGA  >  CP009273/1515056‑1515347

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.