New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 4532507	45 (0.830)	4 (0.080)	4/278	6.7	7.7%	intergenic (+57/‑425)	fimE/fimA	tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin)
	?	CP009273	= 4532803	54 (1.050)					intergenic (+353/‑129)	fimE/fimA	tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin)
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAGCTAACG  >  CP009273/4532361‑4532653                                                                                                                                                   |                                                                                                                                                   cGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCaaa                                                                                                                                                  <  1:597583/149‑1 (MQ=255)  gTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAAc                                                                                                                                                 >  1:844016/1‑149 (MQ=255)      taCCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTc                                                                                                                                             <  2:766147/149‑1 (MQ=255)      gaccgtcatgaaTTCTGCTGGATTAGCCGGACGATGCGAAAGAAATAATCTCATAAACGAAAAAATAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTc                                                                                                                                             <  1:696220/139‑1 (MQ=255)           ccAGGAATGCTGGGCGTATTGGGGGATTATGGGAAAGAAATAATCGCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTATCTTATTGATAAGAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCatat                                                                                                                                        <  1:378953/149‑1 (MQ=255)            cAGTAACGCTGCTCGTTTTGCCGGATTACGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATc                                                                                                                                       <  2:399185/149‑1 (MQ=255)              gTAATGCTGCTAGTTTTGCCGAATTATGGGAAAGAAAGAATCTCAAAGACGAAAAATAAAAAAGAGAACAGGATTGATTTAACTTATAGATAATAAAGTTAAAAAAAGAAAGAAATACAGGACAATTGGGGGAAAACTGTCCAAATCat                                                                                                                                     >  1:469674/1‑149 (MQ=255)               tAATGCTGCTCGTTTTGCCGGCATATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGGGAAGTGATCTGGATTAACTTATTGATAATAAAATAAAAAAAACTAATAAATACAAGACAATTGGGGCCAAACTGTCCATAACata                                                                                                                                    >  1:362691/1‑149 (MQ=255)                       ctCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTAGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGAAAATTGGGGCCAAACTGTCCATATCATAAAAAAgat                                                                                                                            >  1:687567/1‑147 (MQ=255)                           ttttGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAACAAACAAAGAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGt                                                                                                                        >  2:391157/1‑149 (MQ=255)                                gcGGGTTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTAtttt                                                                                                                   <  1:137536/148‑1 (MQ=255)                                   gATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTtc                                                                                                                >  1:223571/1‑149 (MQ=255)                                   gATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTtc                                                                                                                <  2:704456/149‑1 (MQ=255)                                    aTTATGGGAAAGAAATAATCTCATAAACGCAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAAAAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTtct                                                                                                               <  1:658243/149‑1 (MQ=255)                                       aTGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCaa                                                                                                            <  2:669002/149‑1 (MQ=255)                                       aTGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCaa                                                                                                            <  1:864857/149‑1 (MQ=255)                                         gggAAAGAAATAATCCCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTGAAAATATTGATAATAAAGTTAAAAAAACAAATAAATACAAGCCACTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGc                                                                                                          <  1:49268/149‑1 (MQ=255)                                           gaaagaaaTAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCAt                                                                                                        >  2:625054/1‑149 (MQ=255)                                                aaaTAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATaaaaa                                                                                                   >  2:76781/1‑149 (MQ=255)                                                     atCTCATAAACGAAAAATTAAAAAGAGAAGAGTTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTa                                                                                              <  1:153285/149‑1 (MQ=255)                                                       ctcATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATCGGCGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTaaa                                                                                            <  2:696154/149‑1 (MQ=255)                                                           tAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAAc                                                                                        <  2:576729/149‑1 (MQ=255)                                                                            agagaagagGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAAc                                                                       >  1:394637/1‑149 (MQ=255)                                                                                     gTTTGATTTAACTTATTGATAATAAAGTTAAACCGACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACGGTTTGata                                                              >  1:857093/1‑149 (MQ=255)                                                                                                attATAGAAAATAAAGTTAAAAAAAAAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATAAAAAAAAAAAAAAAAAAGCATCTAACTGTTTGATATGTAAattatt                                                   <  1:213764/148‑1 (MQ=255)                                                                                                    ttGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTa                                               >  2:802019/1‑149 (MQ=255)                                                                                                       ataataAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAACAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTg                                            >  2:170480/1‑149 (MQ=255)                                                                                                       ataataAAGTCAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCCTAACAACGTTACGTATTTGTTCTCAAGCTTAAAATTATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTg                                            >  2:842199/1‑149 (MQ=255)                                                                                                              aggtAAAAAAACAAAGAAATACAAGACAATTGGGGCCAAACTGTCCATAGCATAAATCAGTTACGTATGTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAaatta                                     <  2:342318/146‑1 (MQ=255)                                                                                                                   aaaaaaCAAATAAATACAAGACAATTGGTGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTc                                <  1:769336/149‑1 (MQ=255)                                                                                                                   aaaaaaCAAATAAATACAAGACAATTGGGGCCCAACTGTCTATATCATAAATAAGTTACGTATTTTTTCTCAAGCTTAAAAATATAAAAAAAAAAAAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTc                                <  1:483403/149‑1 (MQ=255)                                                                                                                   aaaaaaCAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGCCAAAAAGCATCTAACTGTTTGATATGTAAATTGTTTCTATTGTCAATTAATTTc                                >  2:519680/1‑149 (MQ=255)                                                                                                                     aaaaCAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTcac                              <  1:76781/149‑1 (MQ=255)                                                                                                                      aaaCAAATAACAACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTcaca                             <  2:6681/149‑1 (MQ=255)                                                                                                                      aaaCAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTcaca                             <  2:6735/149‑1 (MQ=255)                                                                                                                      aaaCAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCACAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTcaca                             >  1:101844/1‑149 (MQ=255)                                                                                                                      aaaCAAATAAATACAAGACAATTGGGGCCAAACTGGCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTcaca                             <  2:6807/149‑1 (MQ=255)                                                                                                                          aaataaatACAAGACAATGGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAAAAAAAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCAc                         <  1:127363/149‑1 (MQ=255)                                                                                                                              aaacaCAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTcc                     <  1:715610/149‑1 (MQ=255)                                                                                                                                ataCAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGc                   <  1:631580/149‑1 (MQ=255)                                                                                                                                  acaatcgaaTTAGGGCCAACCGTGCCATATCATAAATAAGTGACCTTATTTTTCTCAAGCATACAAATCTTAAAATACGACAACACGTATTTAACTGTTTGCTATGTGAATTACTTCTATTGTACATTAATTTCACATCACCTCCGCta                 <  1:52292/142‑1 (MQ=255)                                                                                                                                  aCAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCtt                 >  1:800600/1‑148 (MQ=255)                                                                                                                                         aaTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATACGTaa          >  1:649724/1‑149 (MQ=255)                                                                                                                                                 ccAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAGCTAACg  >  1:728595/1‑149 (MQ=255)                                                                                                                                                 ccAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAGCTAACg  >  2:851389/1‑149 (MQ=255)                                                                                                                                                   |                                                                                                                                                   CGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAGCTAACG  >  CP009273/4532361‑4532653

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.