New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	3791581 =	61 (1.120)	5 (0.100)	5/270	6.0	8.4%	intergenic (+14/+18)	waaL/waaU	O‑antigen ligase/lipopolysaccharide core biosynthesis
	?	CP009273	3791609 =	54 (1.090)					coding (1064/1074 nt)	waaU	lipopolysaccharide core biosynthesis
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

ATTAACGCTTGGCATTGTGGGGATTGGACTCAGTGATGTGATCATATGGGCACGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGACCAAATTAAATGCG  >  CP009273/3791438‑3791729                                                                                                                                                |                                                                                                                                                     atTAACGCTTGGCGTTGTGGGGAGTGGACGCAGTGATGTGATCATATGGGCACGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTaagaa                                                                                                                                                 <  2:656587/149‑1 (MQ=255) atTAACGCTTGGCATTGTGGGGATTGGACTCAGTGATGTGATCATATGGGCACGCAGCATTCCAATTATCATTATATCCGCTATCGTACTCTTACTCGTCATTAATAACCGTAACAATACAATTAATTAAGAATAAACAAGTTTaagaa                                                                                                                                                 <  2:791780/149‑1 (MQ=255)    gaCGCGTGGCATTGTGGGGATTGGTCTCAGTGATGTGATCATATGGGCACGAAGCATTCCAATTATCATTATATCCGCTATAGTACTCTTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTg                                                                                                                                              <  1:618151/148‑1 (MQ=255)             cgttGTGGGGATTGGACTCAGTGATGTGATCATATGGGCACGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTAATCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAAc                                                                                                                                     <  1:120641/147‑1 (MQ=255)              aTTGTGGGGATTGGACTCAGTGATGTGATCATATGGGCACGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACt                                                                                                                                    <  1:805001/149‑1 (MQ=255)                 gtgGGGATTGGACTCAGTGATGTGATCATATGGGCACGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCAc                                                                                                                                 <  2:455663/149‑1 (MQ=255)                  tgGGGATTGGACTCAGTGATGTGATCATATGGGCACGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTACTCGTCATTAATAATCGTCACAATACAGTTAGTTAAGAATAAATAAGTTTAAGAAGTGAGTTAAAACTCatt                                                                                                                                >  2:401361/1‑147 (MQ=255)                   ggggATTGGACTCAGTGATGTGATCATATGGGCACGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTTTAACTCActt                                                                                                                               <  2:531082/149‑1 (MQ=255)                   ggggATTGGACTCAGTGATGTGATCATATGGGCACGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTTTAACTCActt                                                                                                                               <  2:514111/149‑1 (MQ=255)                    gcgATTTGACTCAGTGATGTGATCATATGGGCACGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTACTCGTCATTAATAATCGTAACACTTAAATAAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCAcctc                                                                                                                              <  2:878345/147‑1 (MQ=255)                          ggccTCAGTGTCGTGATCATAGGGGCACGCAGCATTCCAATTACCATTATATCCGCTATAGTCCTCTTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCt                                                                                                                        <  2:585901/146‑1 (MQ=255)                           gACTCAGTGATGTGATCATATGGGCACGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCta                                                                                                                       >  1:496200/1‑149 (MQ=255)                            aCTCAGTGATGTGATCATCTGGGCACGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACCCACTTCTTCTCtat                                                                                                                      >  2:496297/1‑149 (MQ=255)                              tCAGTGATGTGATCATATGGGCACGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATAc                                                                                                                    >  1:539205/1‑149 (MQ=255)                                aGTGATGTGATCATATGGGCACGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAATAAGTGAGTTAAAACTCACTTCTTATCTATACaa                                                                                                                  >  1:388720/1‑149 (MQ=255)                                aGTGATGTGATCATATGGGCACGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACaa                                                                                                                  >  1:282117/1‑149 (MQ=255)                                aGTGATGTGATCATATGGGCACGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACaa                                                                                                                  >  2:306054/1‑149 (MQ=255)                                aGTGATGTGATCATATGGGCACGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACaa                                                                                                                  <  2:152815/149‑1 (MQ=255)                                  tgatgtgatCATATGGGCACGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTACTCGTCATTAATAATCGTAACAATACAATTCATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACt                                                                                                                >  1:326001/1‑149 (MQ=255)                                  tgatgtgatCATATGGGCACGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACaagt                                                                                                                <  1:333087/149‑3 (MQ=255)                                  tgatgtgatCATATGGGCACGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACt                                                                                                                >  2:507716/1‑149 (MQ=255)                                    ctgtgctCATAGGGGCGCGCAGCATTCCAATTATCGTTATATCCGAAATAGTCCTCTTACCCGTCATTAATAATCGCCACAATACAATTCATTCAGAATAAAAAAGTTGAAGTAGGGAGATAAAAAACACTTCTTATCTATACAACTTa                                                                                                              >  1:138779/2‑149 (MQ=255)                                      gtgatCATATGGGCACGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAAt                                                                                                            >  2:188237/1‑149 (MQ=255)                                        gatCATATGGGCACGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAAtcc                                                                                                          >  2:768119/1‑148 (MQ=255)                                        gatCATATGGGCACGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGATTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAAtcc                                                                                                          >  2:219130/1‑148 (MQ=255)                                         atCATATGGGCACGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAAtctc                                                                                                         >  2:20446/1‑149 (MQ=255)                                           cATATGGGCACGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCtt                                                                                                       <  2:851900/149‑1 (MQ=255)                                                gggCACGCAGCATTCCAATTATCGTTATATCCGCTATAGTCCTCTTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTg                                                                                                  >  2:585257/1‑149 (MQ=255)                                                gggCACGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTAAGTAAAAACGCGCTTCTTATCTATACAACTTAATCTCTTTACTg                                                                                                  >  2:22404/1‑149 (MQ=255)                                                  gCACGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTAATGaa                                                                                                >  1:203294/1‑149 (MQ=255)                                                      gcagcaTTTCACGTATCATTATATCCGCTATAGTCCTCTTACTCGTCATTAATAATCGTCACAATACAATTAATCAAGAATAAACAAGTTTAAGAAGTGAGTTAAACCTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAg                                                                                            <  1:319119/149‑1 (MQ=255)                                                            ttCCAATTATCATTATATCCGCTATAGTCCTCTTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAg                                                                                      >  2:497784/1‑149 (MQ=255)                                                            ttCCAATTATCATTATATCCGCTATAGTCCTCTTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAg                                                                                      >  2:258349/1‑149 (MQ=255)                                                              ccAATTATCATTATATCCGCTATAGTCCTCTTACTCGTCATTAATAATCGTGACAATACAATTAATTAAGAATAAACAGGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGACTTAGTTAAAGtt                                                                                    >  1:207316/1‑149 (MQ=255)                                                                aaTTATCATTATATCCGCTATAGTCCTCTTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTc                                                                                  >  1:76116/1‑149 (MQ=255)                                                                 aTTATCATTATAGCCGCTATAGTCCTCTTGCTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACAGAATTAGTTAAAGTTTCa                                                                                 <  1:567862/149‑1 (MQ=255)                                                                  ttATCATTATATCCGCTATAGTCCTCTTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATATACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATAAAACTTAATATCTCTACTGAATTAGTTAAAGTTTCat                                                                                >  1:30326/1‑148 (MQ=255)                                                                      catgttctCCGCTATAGTCCTCTTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATc                                                                            <  2:808360/142‑1 (MQ=255)                                                                         tataTCCGCTATAGTCCTCTTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGat                                                                         <  2:595871/149‑1 (MQ=255)                                                                              ccGCTATAGTCCTCTTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGAGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCtt                                                                    >  1:261822/1‑149 (MQ=255)                                                                               cGCTATAGTCCTCTTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCttt                                                                   >  1:450364/1‑149 (MQ=255)                                                                               cGCTATAGTCCTCTTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCttt                                                                   >  2:514387/1‑149 (MQ=255)                                                                                     aGTCTTCTTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTCACCGt                                                             <  1:626218/149‑1 (MQ=255)                                                                                      gTCCTCTTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGta                                                            >  1:787056/1‑149 (MQ=255)                                                                                       tCCTCTTACTCGTCATTAATAATCGTAACAATACAATTAATTGAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGtat                                                           <  2:879031/149‑1 (MQ=255)                                                                                         ctctTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTatat                                                         >  2:613043/1‑149 (MQ=255)                                                                                              aCTCGTCATTGATAAGCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTCATCTATACAACTTAATCTCGTTACGGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTgg                                                    <  2:85707/149‑1 (MQ=255)                                                                                                     aTTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCATTATCACTATCTTTTACCGTGAATGTTGGGGATACt                                             >  1:325635/1‑149 (MQ=255)                                                                                                      ttAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTTGATGTTTGGGATACTa                                            >  2:742435/1‑149 (MQ=255)                                                                                                          taatCGTAACAATACAATTCATTCAGAGGAGACAGGTTTAAGAAGTCAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTg                                        <  1:365674/149‑1 (MQ=255)                                                                                                               gTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTAAAAACTGACGTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAg                                   >  1:672014/1‑149 (MQ=255)                                                                                                                    aatacaatTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTa                              <  1:427658/149‑1 (MQ=255)                                                                                                                         aattaattAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTatgtta                         >  1:752405/1‑146 (MQ=255)                                                                                                                            taattaaGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTTTAGGGTGGGGATACTATTTGTATAGATTTATGATGAtt                      <  2:656886/149‑1 (MQ=255)                                                                                                                                gtaatctAAACAAGTTGAAGCAGTGAGATAAACCTCACTGCTTATCTCTACAACTTAATCTCTTTACTGAATTAGCTAAAGGTTCAGTATCGGTATCTTGTACCGGATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCggg                  <  1:856131/143‑1 (MQ=255)                                                                                                                                 aaGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCgggg                 >  1:270532/1‑149 (MQ=255)                                                                                                                                    aaTAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGcc              >  1:807207/1‑149 (MQ=255)                                                                                                                                       caaCAAGTTTTAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCGTTACTGAATTAGTTAAAGTTTCAGTATCGATACCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGACCaaa           <  2:430568/148‑1 (MQ=255)                                                                                                                                        aaCAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGACCAAAt          >  2:268883/1‑149 (MQ=255)                                                                                                                                         aCAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGACCAAAtt         >  1:849437/1‑149 (MQ=255)                                                                                                                                             gTTTAAGAAGTTAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGACCAAATTAAAt     <  2:668365/149‑1 (MQ=255)                                                                                                                                                tAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGACCAAATTAAATGCg  <  2:388720/149‑1 (MQ=255)                                                                                                                                                |                                                                                                                                                     ATTAACGCTTGGCATTGTGGGGATTGGACTCAGTGATGTGATCATATGGGCACGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGACCAAATTAAATGCG  >  CP009273/3791438‑3791729

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.