New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	1203246 =	8 (0.150)	24 (0.490)	23/264	1.4	78.5%	coding (290/630 nt)	stfP	e14 prophage; uncharacterized protein
	?	CP009273	1205075 =	6 (0.120)					pseudogene (1/501 nt)	stfE	pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related

TTCCATCCCCCCCAGAGGCAGATGCTTTTGCGGCATTCCACCCCCACTGAATGATTACTGATTGCTCAATACCACCAATCATAACCGGTATAGCTATGAAACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP009273/1203404‑1203246 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAGGATGC  >  CP009273/1205075‑1205221                                                                                                                                                                                                                                                                                                                    TTCCATCCCCCCCAGACGCAGATGCTTTTGCGGCATTCCACCCCCACTGAATGATTACTGATTGCCCAATACCACCAATCATAACCGGTATAACTATGAACCCGGTGGCTACTAATGTAGCCCTTGCTGCCTTGAGTTTTGCTCCTTCT                                                                                                                                                               >  1:353025/1‑149          CCCCAGAGGCAGATGCTTTTGCGGCATTCCACCCCCACTGAATGATTACTGATTGCTCAATACCACCAATCATAACCGGTATAGCTATGAAACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTAAGTTTTGCTCCTTCTCCCAAACCA                                                                                                                                                      >  1:431470/1‑149                   CAGATGCTGTTGCGGTATTCCACCCCCACTGAATGATTACTGAATGCTCAATACCACCAATCATAACCGGTATAGCTATGAAACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATG                                                                                                                                             <  1:637520/149‑1                    AGATGCTTTTGCGGCATTCCACCCCCACTGAATGATTACTGATTGATCGTGGTGGCCAGTCGTCTCCGGTATAGCTATGAAACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGA                                                                                                                                            <  2:391968/149‑1                               ccGCACTCCACCCCCACTGCATGATTACTGATTGCTCAATACCACCACGCATAACCGGCATAGCCATGACACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTCCTCCCAAACCAACGTTTATGAAAATGAAGAAA                                                                                                                                 <  1:8204/147‑1                                gcCATTCCACCCCCACTGAATGATCACTGATTGCTCAATACCACCAATCATAACCGGTATAGCTATGAACCCGGTGCGTACCAATCAAACAGTTGTCGCATTGAGTTTTTCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAAT                                                                                                                                <  1:854818/147‑1                                    TTCCACCCCCACTGAATGATTACTGATTGCTCAATACCACCAATCATAACCGGTATAGCTATGAAACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACA                                                                                                                            <  2:233553/149‑1                                      CCACCCCCACTGAATGATTACTGATTGCTCAATACCACCAATCATAACCGGTAGAGCTATGCAACCGCTGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCCAACCAACGTTTATGAAAAGGAAGAAATAACAAG                                                                                                                          >  2:545763/1‑149                                            CCACTGAATGATTACGGATTGCTCAATACCACCAATCATAACCGGTATAGCTATGAAACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATG                                                                                                                    <  1:509752/149‑1                                              ACTGAATGATTACTGATTGCTCAATACCACCAATCATAACCGGTATAGCTATGAAACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGC                                                                                                                  <  2:310612/149‑1                                                         ACTGATTGCTCAATACCCCCAATCATAAGCGTTATAGCTATGCTCAGGGTGCTACCTAATGTAGCCGTTGCTGCATTGAGGTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGC                                                                                                       <  2:204962/149‑1                                                          CTGATTGCTCAATACCACCAATCATAACCGGTATAGCTATGAAACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAATTGAAGAAATAACAAGCAAATGGCATCATTCCTGCT                                                                                                      >  1:731711/1‑149                                                           TGATTGCTCAATACCACCAATCATAACCGGTATAGCTATGAAACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTT                                                                                                     >  2:29376/1‑149                                                            tATTGCTCAATACCACCAATCATAACCGGTATAGCTATGAAACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTT                                                                                                    <  1:423246/148‑1                                                             ATTGCTCAATACCACCAATCATAACCGGTATAGCTATGAAACCGGTGCGTCCTGGTGTAGCCGTTGCTGCCTTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAAAAATAAAAAGCAAATGGCATCATTCCTGCTTTT                                                                                                   >  2:30995/1‑149                                                               TGCTCAATACCACCAATCATAACCGGTATAGCTATGAAACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAATCAAATGGCATCATTCCTGCTTTTAC                                                                                                 <  1:508537/149‑1                                                                           CCAATCATAACCGGTATAGCTATGAAACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTA                                                                                     >  1:254493/1‑149                                                                                                 TGAAACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCGCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATGTAACGTGCTTATTGGCTATGTACG                                                               >  2:255759/1‑149                                                                                                      CCGGTGCGGCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTAT                                                          <  1:336785/149‑1                                                                                                              TCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGGTTTAACATGCTTATTGGCTATGTACGCGTATCAAGAAct                                                  >  2:512847/1‑147                                                                                                                  AATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCGACGGTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTTTTTACGCGTATCAAAAAAGGAgc                                              >  1:101548/1‑147                                                                                                                       AGCCGTTGCTGCATTGAGTTTTGCTCCTTCCCCCAAACCCACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAAC                                         <  1:708899/149‑1                                                                                                                           GTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAG                                     <  2:254493/149‑1                                                                                                                                           TTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAAAGACCAGAACACAGATCTACAACGTAATGC                     <  2:546517/149‑1                                                                                                                                           TTGCTCCTTATGCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGC                     <  2:25301/149‑1                                                                                                                                            TGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGGAATGgc                    >  1:726617/1‑147                                                                                                                                                 CTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAA               <  2:397625/149‑1                                                                                                                                                     TCCAAAACCAACGTTTATGAAAAGGAAGAAATAACAAGCAAAGAGCATCATTCCTGCTGTTACCAGGGGGAGTTAACATGCTTATTGGCTATGTACGCGGATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCGGAAGTGT           >  1:880878/1‑149                                                                                                                                                      CCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTCGCAGTGTTATGTACCATGCCTATTCGCTATGTACGCGTATCAACAATTGCCCAGAACACAGATCTACAACGTATTGCGCTGAACTGTG          >  2:432168/1‑149                                                                                                                                                      CCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTCCAACGTAATGCGCTGAACTGTG          >  1:478061/1‑149                                                                                                                                                      CCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCATATTGACAGTTTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTG          >  2:650984/1‑149                                                                                                                                                           ACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAGGA     <  2:134356/149‑1                                                                                                                                                              AACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAGGATGC  >  2:141694/1‑149                                                                                                                                                              AACGTTTATGAAAATGAAGAAAACACAAGCAAATGGCCTCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATGAGCTATGTACGCGTAACAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACAGTGCAGGATGC  >  1:178492/1‑149                                                                                                                                                                                                                                                                                                                    TTCCATCCCCCCCAGAGGCAGATGCTTTTGCGGCATTCCACCCCCACTGAATGATTACTGATTGCTCAATACCACCAATCATAACCGGTATAGCTATGAAACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP009273/1203404‑1203246 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAGGATGC  >  CP009273/1205075‑1205221

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.