New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	1972748 =	2 (0.040)	71 (1.540)	44/288	0.1	97.3%	intergenic (‑294/‑486)	flhD/uspC	flagellar class II regulon transcriptional activator, with FlhC/universal stress protein
	?	CP009273	= 2283592	NA (NA)					noncoding (1/1195 nt)	IS5	repeat region

ATTTACGGTGAGTTATTTTGACTGTGCGCAACATCCCATTTCGATTATTCCTGTTTCATTTTTGCTTGCTAGCGTAGCGAAAAACTTTTTAACAGATTGAAATACACCCAAAACAAAAGTATGACTTATACATTTATGTTAAg‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP009273/1972889‑1972748 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTTCTTGTCCCGC  <  CP009273/2283592‑2283444                                                                                                                                                                                                                                                                                                     ATTTACGGTGAGTTATTTTGACTGTGCGCAACATCCCATTTCGATTATTCCTGTTGCATTTTTGCTTGCTAGCGTAGCGAAAAACTTTTTAACAGATTGAAATACACCCAAAACAAAAGTATGACTTATACATTTATGTTAAGGAAGGT                                                                                                                                                <  1:697269/149‑1      CGGTGAGTTATTTTGACTGTGCGCAACATCCCATTTCGATTATTCCTGTTTCATTTTTGCTTGCTAGCGGAGCGAAAAACTTTTTAACAGATTGAAATACACCCAAAACAAAAGTATGACTTATACATTTATGTTAAGGAAGGTGCGAA                                                                                                                                           <  1:186950/149‑1       GGTGAGTTATTTTGACTGTGCGCAACATCCCATTTCGATTATTCCTGTTTCATTTTTGCTTGCTAGCGTAGCGAAAAACTTTTTACCAGATTGAAATACACCCAAAACAAAATTATGACTTATGCATTTATGTTAAGGAAGGTGCTAAC                                                                                                                                          >  1:335780/1‑149         TGAGTTATTTTGACTGTGCGCAACAGCCCATTTCGATTATTCCTGTTTCATTTTTGCTTGCTAGCGTAGCGAAAAACTTTTTAACAGATTGAAATACACCCAAAACAAAAGTATGACTTATACATTTATGTTAAGGAAGGTGCGAACAA                                                                                                                                        <  1:535754/149‑1               gTTTTGACTGTGCGCAACAGCCCGTTGCGATTATTCCTGTTTCATTTTTGCTTGCTAGCGTAGCGAAAAACTTTTTAACAGATTGAAATACACCCAAAACAAAAGTATGACTTATACATTTATGTTAAGGAAGGTGCGAACAA                                                                                                                                        <  2:636262/142‑1               ATTTTGACTGTGCGCAACATCCCATTTCGATTATTCCTGTTTCATTTTTGCTTGCTAGCGTAGCGAAAAACTTTTTAACAGATTGAAATACACCCAAATCCAAAGTATGTCTTATACATTTATGTTAAGGAAGGTGCGAACAA                                                                                                                                        <  2:652313/143‑1               ATTTTGACTGTGCGCAACATCCCATTTCGATTATTCCTGTTTCATTTTTGCTTGCTAGCGTAGCGAAAAACTTTTTAACAGATTGAAATACACCCAAAACAAAAGTATGACTTATACATTTATGTTAAGGAAGGTGCGAACAA                                                                                                                                        <  2:646056/143‑1                TTTTGACTGTGCGCAACATCCCATTTCGATTATTCCTGTTTCATTTTTGCTTGCTAGCGTAGCGAAAAACTTTTTAACAGATTGAAATACACCCAAAACAAAAGTATGACTTATACATTTATGTTAAGGAAGGTGCGAACAAGTCCCTG                                                                                                                                 <  1:251243/149‑1                 TTTGACTGTGCGCAACATCCCATTTCGATTATTCCTGTTTCATTTTTGCTTGCTAGCGTAGCGAAAAACTTTTTAACAGATTGAAATACACCCAAAACAAAAGTATGACTTATACATTTATGTTAAGGAAGGTGCGAACAAGTCCCTGA                                                                                                                                <  1:284379/149‑1                  TTGACTGTGCGCAACATCCCATTTCGATTATTCCTGTTTCATTTTTGCTTGCTAGCGTAGCGAAAAACTTTTTAACAGATTGAAATACACCCAAAACAAAAGTATGACTTATACATTTATGTTAAGGAAGGTGCGAACAAGTCCCTGAT                                                                                                                               >  1:638901/1‑149                       TGTGCGCAACATCCCATTTCGATTATTCCTGTTTCATTTTTGCTTGCTAGCGTAGCGAAAAACTTTTTAACAGATTGAAATACACCCAAAACAAAAGTATGACTTATACATTTATGTTAAGGAAGGTGCGAACAAGTCCCTGA                                                                                                                                >  2:275811/1‑143                         TGCGCAACATCCCATTTCGATTATTCCTGTTTCATTTTTGCTTGCTAGCGTAGCGAAAAACTTTTTAACAGATGCAAATACACCCAAAACAAAAGTATGCCTTATACATTTATGTTAAGGAAGATGCGAACAAGCCCCTGATA                                                                                                                              >  2:639805/1‑143                          GCGCAACATCCCATTTCGATTATTCCTGTTTCATTTTTGCTTGCTAGCGTAGCGAAAAACTTTTTAACAGATTGAAATACACCCAAAACAAAAGTATGACTTATACATTTATGTTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATC                                                                                                                       <  1:15190/149‑1                                CATCCCGTTTGGAATATTCTTGTTTCATTTTTGCTTGCCAGCGTAGCGAAAAACTTTTTAACAGATTGAAATACACCCAAAACAAAAGTATGACTTATACATTTATGTTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATC                                                                                                                       <  2:414187/143‑1                                CATCCCATTTCGATTATTCCTGTTTCATTTTTGCTTGCTAGCGTAGCGAAAAACTTTTTAACAGATTGAAATACACCCAAAACAAAAGTATGACTTATACATTTATGTTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTT                                                                                                                 <  1:756811/149‑1                                CATCCCATTTCGATTACTCCTGTTTCATTTTTGCTTGCTAGCGTAGCGAAAAACTTTTTAACAGATTGAAATACACCCAAAACAAAAGTATGACTTATACATTTATGTTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTT                                                                                                                 <  1:126703/149‑1                                  TCCCATTTCGATTATTCCTGTTTCATTTTTGCTTGCTAGCGTAGCGAAAAACTTTTTAACGGATTGAAATACACCCAAAACAAAAGTATGACTTATACATTTATGTTAAGGAAGGTGCGCACAAGTCCCTGATATGAGATCAT                                                                                                                     >  2:580675/1‑143                                           GATTATTCCTGTTTCATTTTTGCTTGCTAGCGTAGCGAAAAACTTTTTAACAGATTGAAATACACCCAAAACAAAAGTATGACTTATACATTTATGTTAAGGAAGGTGCAAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAG                                                                                                      >  1:42405/1‑149                                                TTCCTGTTTCATTTTTGCTTGCTAGCGTAGCAAAAAACTTTTTAACAGATTGAAATACACCCAAAACAAAAGTATGACTTATACATTTATGTTAAGGAAGGTGCGAACAAGTCCCTGATATGATATCATGTTTGTCATCTGGA                                                                                                       <  2:410526/143‑1                                                  CCTGTTTCATTTTTGCTTGCTAGCGTAGCGAAAAACTTTTTAACAGATTGAAATACACCCAAAACAAAAGTATGACTTATACATTTATGTTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGC                                                                                                     <  2:368305/143‑1                                                      gTTCATTTTGGCTTGCTAGCGTAGCGAAAAACTTTTTAGCAGATTGAACTACACCCAAAACAAAAGTATGACTTATACATTTATGTTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAG                                                                                           <  1:441227/148‑1                                                        TCATTTTTGCTTGCTAGCGTAGCGAAAAACTTTTTAACAGATTGAAATACACCCAAAACAAAAGTATGCCTTAAACATTTATGTTAAGGATGGTGCGAACAAGTCCCTCATATAAGAGCATGTTTTGCAGTTGGGGCCATGGA                                                                                               >  2:471359/1‑143                                                           TTTTTGCTTGCTAGCGTAGCGAAAAACTTTTTAACAGATTGAAATACACCCAAAACAAAAGTATGACTTATACATTTATGTTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATATAACA                                                                                            >  2:402195/1‑143                                                            TTTTGCTTGCTAGCGTAGCGAAAAACTTTTTAACAGATTGAAATACACCCAAAACAAAAGTATGACTTATACATTTATGTTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAG                                                                                           <  2:188069/143‑1                                                              tttCTTGCTAGCGTAGCGAAAAACTTTTTAACAGATTGAAATACACCCAAAACAAAAGTATGACTTATACATTTATGTTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGG                                                                                         <  2:717247/140‑1                                                              TTGCTTGCTAGCGTAGCGAAAAACTTTTTAACAGATTGAAATACACCCAAAACAAAAGTATGACTTATACATTTATGTTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGG                                                                                         <  2:717172/143‑1                                                              TTGCTTGCTAGCGTAGCGAAAAACTTTTTAACAGATTGAAATACACCCAAAACAAAAGTATGACTTATACATTTATGTTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGG                                                                                         <  2:610726/143‑1                                                                 CTTGCTAGCGTAGCGAAAAACTTTTTAACAGATTGAAATACACCCAAAACAAAAGTATGACTTATACATTTATGTTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAAACGGGTTC                                                                                      >  2:229848/1‑143                                                                    gcttccgctgctAAAAACTTTTTAATAGAGTGAAAGACACCCAAAACAAAAGTATGACTTATACATTTATGTTAATGAAGGTGCGAACAATTCCCTGATATGAGATCATGTTTGTCATCTGTAGCCATAGACCAGGGTTCATC                                                                                   <  2:122539/131‑1                                                                      TAGCGTAGCGAAAAACTTTTTAACAGATTGAAATACACCCAAAACAAAAGTATGACTTATACATTTATGTTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCA                                                                           >  1:422332/1‑149                                                                            cGCGAAAAACTTTTTAACAGATTGAAATTCACACAATACACAAGTATGACTTATACATTTATGTTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACT                                                                     <  1:568460/148‑1                                                                            AGCGAAAAACTTTTTAACAGATTGAAATACACCCAAAACAAAAGTATGACTTATACATTTATGTTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACT                                                                     <  1:108641/149‑1                                                                             GCGAAAAACTTTTTAACAGATTGAAATACACCCAAAACAAAAGTATGACTTATACATTTATGTTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTT                                                                    <  1:433738/149‑1                                                                                 AAAGCTTTTTAACAGATTGAAATACGCCGAAGACAAAAGTATGACTTATACATTTATGTTAAGGAAGGTGTGAACAAGTCCCTGATATGACATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCT                                                                <  1:632614/149‑1                                                                                   AACTTTTTAACAGATTGAAATACACCCAAAACAAAAGTATGCCTTATACATTTATGTTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGTGCCATAGAACAGGGGTCATCATGAGTCATCAACTTACCTTC                                                              >  1:436313/1‑149                                                                                      TTTTTAACAGATTGAAATACACCCAAAACAAAAGTATGACTTATACATTTATGTTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCC                                                           >  1:206037/1‑149                                                                                      TTTTTAACAGATTGAAATACACCCAAAACAAAAGTATGACTTATACATTTATGTTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTGCATCATGAGTCATCAACTTACCTTCGCC                                                           >  1:602770/1‑149                                                                                          TAACAGATTGAAATACACCCAAAACAAAAGTATGACTTATACATTTATGTTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCG                                                             >  2:261659/1‑143                                                                                          TAACAGATTGAAATACACCCAAAACAAAAGTATGACTTATACATTTATGTTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCG                                                             <  2:191199/143‑1                                                                                           AACAGATTGAAATACACCCAAAACAAAAGTATGACTTATACATTTATGTTAAGGAGGGTGCGAACAAGTCCCTGATGTGAGATCATGTTTGTCATCTGAAGCCATAGAACAGGGTTCATCATAAGTCCTCAACTTACCTTCGCCGACAG                                                      >  1:418785/1‑149                                                                                            ACAGATTGAAATACACCCAAATCAAAAGTATGACTTATACATTTATGTTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGT                                                     <  1:257954/149‑1                                                                                            ACAGATTGAAATACAACCAAAACAAAAGTATGACTTATACATTTATGTTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGCAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTCCCTTCGCC                                                           >  2:443445/1‑143                                                                                                ATTGAAATACAACCAAAACAAAAGTATGACTTATACATTTATGTTAAGGAAGGTGCAAAAAAATCCCTGATATGAGATCATGTTTGTCAGCTGGAGCCATAGAACGAGGTTCATGATGAGTCATCAACTTACATTggacaact                                                       >  2:462315/1‑135                                                                                                  ttAAATACACCCAAAACAAAAGTATGACTTATACATTTATGTTAAGGAAGGTGCGAACAAGTCCCTGATACGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGT                                                     <  2:660904/141‑1                                                                                                   GAAATACACCCAAAACAAAAGTATGACTTATACATTTATGTTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCA                                              <  1:792642/149‑1                                                                                                    AAATACACCCAAAACAAAAGTATGACTTATACATTTATGTTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCACCTTACCTTCGCAGACcatgg                                                   >  2:508328/1‑138                                                                                                     AATACACCCAAAACAAAAGTATGACTTATACATTTATGTTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGC                                            <  1:740590/149‑1                                                                                                            CCAAAACAAAAGTATGACTTATACATTTATGTTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGC                                     >  1:678110/1‑149                                                                                                            CCAAAACAAAAGTATGACTTATACATTTATGTTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCA                                           <  2:574969/143‑1                                                                                                            CCAAAACAAAAGTATGACTTATAAATTACTGTAATCGTAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGACGCCAGTGAATTCAGCAGTAAGC                                     >  1:192113/1‑149                                                                                                             CAAAACAAAGGTATGACTTATACATTTATGTTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTGATCAACTTACCTTAGCCGACAATGAATTGAGCAG                                          >  2:644617/1‑143                                                                                                              AAAACAAAAGTATGACTTATACATTTATGTTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGC                                   >  1:277335/1‑149                                                                                                                        TATGACTTATACATTTATGTTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGACCA                         >  1:83270/1‑149                                                                                                                        TATGACTTATACATTTATGTTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGACCA                         >  1:788872/1‑149                                                                                                                             CTTATACATTTATGTTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAA                    >  1:642232/1‑149                                                                                                                                   CATTTATGTTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAA                    <  2:8549/143‑1                                                                                                                                     TTTATGTTAAGTAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGGCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGA                  <  2:458312/143‑1                                                                                                                                      TTATGTTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTTC           <  1:754971/149‑1                                                                                                                                          GTTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGTCGACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTTCTTGT       <  1:226741/149‑1                                                                                                                                          GTTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTT             >  2:337323/1‑143                                                                                                                                           TTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTTCTTGTC      >  1:96374/1‑149                                                                                                                                            TAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTTCTTGTCC     >  1:559450/1‑149                                                                                                                                            TAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTTCTTGTCC     >  1:261803/1‑149                                                                                                                                            TAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTTCTTGTCC     >  1:138864/1‑149                                                                                                                                             cgGGAAGGTGCGAACAAGGCCCGGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTATCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGTCCAGAAAAGAGATTTTCT          <  2:453487/141‑1                                                                                                                                             AAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATATGGAGCCATAAAACAGGGTTCAAACTGGCTCATCAACTTCCCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATGTTCT          >  2:70386/1‑143                                                                                                                                             AAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGGTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTTCTTGTCCC    >  1:742031/1‑149                                                                                                                                              AGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTTCTTGTCCCG   >  1:28058/1‑149                                                                                                                                              AGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTTCTTGTCCCG   <  1:137305/149‑1                                                                                                                                              AGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTTCTT         <  2:24905/143‑1                                                                                                                                              AGGAAGGTGCGAACAAGGCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTTCTT         <  2:37372/143‑1                                                                                                                                              AGGAAGGTGCGAACAAGGCCCTGATATGAGATCATGTGTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTTCTT         <  2:172953/143‑1                                                                                                                                               GGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGGGTCATCAAATACGAAACACCTAGGGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTTCTTGTCCCGC  >  1:185527/1‑149                                                                                                                                               GGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTTCTTG        <  2:56485/143‑1                                                                                                                                               GGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTTCTTG        <  2:141728/143‑1                                                                                                                                                                                                                                                                                                     ATTTACGGTGAGTTATTTTGACTGTGCGCAACATCCCATTTCGATTATTCCTGTTTCATTTTTGCTTGCTAGCGTAGCGAAAAACTTTTTAACAGATTGAAATACACCCAAAACAAAAGTATGACTTATACATTTATGTTAAg‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP009273/1972889‑1972748 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTTCTTGTCCCGC  <  CP009273/2283592‑2283444

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.