New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	2083598 =	14 (0.920)	5 (0.330)	5/272	NT	27.0%	intergenic (+71/‑75)	hisL/hisG	his operon leader peptide/ATP phosphoribosyltransferase
	?	CP009273	3713993 =	13 (0.850)					intergenic (‑1/‑47)	mokA/insJ	pseudogene, overlapping regulatory peptide, enables hokB; completely contained in another CDS/IS150 transposase A

TAATATGCAATTCACACAGTGAATCTCTTATCATCCAGGTGAAAAATAAAAGCGTGAAACAAATCACTATTAAAGAAAGTAATCTATATTTCTGCGGCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGGTTACAGGATC  >  CP009273/3713861‑3714120                                                                                                                                     |                                                                                                                                atcacttaaacggccggatttctgcattgctttgcgtaaacgagtgttgtctgtcattttgttattcctctttaaacctgtctgaaccgttatcaacggcgcaataaaaaaacccccggaaggtgatcttccTGTACTGCACCCAtttt                                                                                                                 >  2:99817‑M2/133‑149 (MQ=255)       gCAATTCACACAGTGACTCTCTTATCATCTAGGTGAAAAATAAAAGCGTGAAACAAATCACTATTAAAGAAAGTAATCTATATTTCTGCGGCATTCCCAGCCTCCTGTGTTAATTTCCAACGAGTATGTACTTCACCCATTTTGTTGGa                                                                                                           >  2:15920/1‑149 (MQ=255)              acacaGTGAATCTCTTATCATCCAGGTGAAAAATTCCTGCGATAAACAAATTACTATTAAAGAAAGTAATCTATATTTCTGCGGCATTCCCAGCCTCCTGTGTTGATTTTCTACGGGTGTGTACTGCACCTATTTTGTTGGAGGATGaa                                                                                                    >  2:61073/1‑149 (MQ=255)                ggatttctgcatagctatgcgtaaacgagtgttgtctgtcattttgttattcctctttaaacctgtctgaaccgttatcaaccgcgcaataaaaaagcccccggaaggtgatcttccTGTACTGCACCCATTTTGTTGGACGAt                                                                                                       <  1:196608‑M2/27‑1 (MQ=255)                                  gcgtaaacgagtgttgtctgtcattttgttattcctctttaaacctgtctgaaccgttatcaaccgcgcaataaaaaagcccccggaaggtgatcttccTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATCGCCCCTa                                                                                     >  1:20733‑M2/100‑144 (MQ=255)                                       gTGAAAAATAAAAGCGTGAAACAAATCACTATTAAAGAAAGTAATCTATATTTCTGCGGCATTCCCAGCCTCATGTGTTGATTTCCAACGCGTGTGTACTGCACCCACTTTGTTGGACGATGAAATGGAATCACCCCTAATATg                                                                                >  1:41633/1‑144 (MQ=255)                                         gAAAAATAAAAGCGTGAAACAAATCACTATTAAAGAAAGTAATCTATATTTCTGCGGCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTc                                                                              <  1:183279/144‑1 (MQ=255)                                                        attttgctattcctctttaaacctgtctgaaccgttatcaaccgcgcaataaaaaagcccccggaaggtgatcttccTGTACTGCACCCATTTTGTTGGACGACGAAGTGAAATAGCCCCTAATATGTCAAAGCCAACATaccg                                                               >  1:57359‑M2/78‑143 (MQ=255)                                                                 cACTATTAAAGAAAGTAATCTATATTTCTGCGGCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTATTGaaaa                                                      >  1:79040/1‑144 (MQ=255)                                                                  aCTATTAAAAAAAGTAATCTATATTTCTGCGGCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGATTAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAg                                                     <  1:36916/144‑1 (MQ=255)                                                                   cTATTAAAGAAAGTAATCTATATTTCTGCGGCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAgc                                                    <  1:23389/144‑1 (MQ=255)                                                                               tgtctgaaccgttatcaaccgcgcaataaaaaagcccccagaaggagatcttccTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAAt                                   >  2:131747‑M2/55‑149 (MQ=255)                                                                                   tgtataTGTCTGCGGGTTTCCGAGCCTCCTGTGTTGATTTCCAACGAGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACTCTTTTGAAAAGCGCCTTGAAGTCGTGaa                                    <  1:43438/142‑1 (MQ=255)                                                                                       tatTTCTGCGGCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATTCCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACtt                           <  2:203483/149‑1 (MQ=255)                                                                                                ggCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACTCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACtga                  <  2:215249/149‑1 (MQ=255)                                                                                                   aTTTCCAGCCTCCTGTGTTGATTTCCAACGAGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACt                    <  1:67047/144‑1 (MQ=255)                                                                                                                  tgtgGAATTCCAACGAATATATACTGCACCCATTTTGTTGGACGATGAAATGGAATACCCCCTAATATGTCACAGCCAAAATACCCTTTTGAAAAGCGCCTTTAAGTCGTGAATCACTACTTCACAACTGATGATGGTTACAgg     <  1:56194/144‑1 (MQ=255)                                                                                                                     cgacctctaaCAAGTATGTACTGCACCCATGTTGTTGGACGATGAAATGGAATAGCACCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGCTGGTTAGAGGatc  >  1:229847/9‑144 (MQ=255)                                                                                                                                     |                                                                                                                                TAATATGCAATTCACACAGTGAATCTCTTATCATCCAGGTGAAAAATAAAAGCGTGAAACAAATCACTATTAAAGAAAGTAATCTATATTTCTGCGGCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGGTTACAGGATC  >  CP009273/3713861‑3714120

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.