mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 2,054 | A→G | H573R (CAC→CGC) | thrA → | aspartokinase I |
| RA | 34,120 | (T)9→8 | coding (146/180 nt) | yaaV ← | hypothetical protein |
| RA | 39,749 | T→C | D213G (GAC→GGC) | caiA ← | putative carnitine operon oxidoreductase |
| RA | 41,228 | A→C | I235S (ATC→AGC) | caiT ← | putative carnitine transporter |
| RA | 66,528 | T→C | Q8R (CAG→CGG) | araD ← | L‑ribulose‑5‑phosphate 4‑epimerase |
| MC JC | 66,533 | 3540 bp→27 bp | [araD]–araB | [araD], araA, araB | |
| RA | 70,289 | G→T | intergenic (‑241/‑98) | araB ← / → araC | L‑ribulokinase/transcriptional regulator for ara operon |
| RA | 78,003 | A→C | E128A (GAG→GCG) | yabM → | putative transport protein |
| RA | 93,625 | C→T | P154S (CCG→TCG) | murE → | meso‑diaminopimelate‑adding enzyme |
| RA | 97,700 | A→G | N205S (AAC→AGC) | murD → | UDP‑N‑acetylmuramoylalanine‑D‑glutamate ligase |
| RA | 104,752 | T→C | I257I (ATT→ATC) | ftsA → | ATP‑binding cell division protein |
| RA | 120,509 | A→G | V348A (GTA→GCA) | aroP ← | aromatic amino acid transport protein |
| RA | 121,408 | A→G | I48I (ATT→ATC) | aroP ← | aromatic amino acid transport protein |
| RA | 125,440 | C→T | F808F (TTC→TTT) | aceE → | pyruvate dehydrogenase |
| RA | 126,053 | T→C | V120A (GTG→GCG) | aceF → | pyruvate dehydrogenase |
| RA | 129,639 | A→G | V541A (GTG→GCG) | yacH ← | putative membrane protein |
| RA | 130,705 | C→T | G186S (GGC→AGC) | yacH ← | putative membrane protein |
| RA | 140,097 | A→G | W377R (TGG→CGG) | gcd ← | glucose dehydrogenase |
| RA | 144,667 | C→T | R31W (CGG→TGG) | yadI → | putative PTS enzyme IIA component |
| RA | 159,448 | A→G | V222A (GTG→GCG) | yadB ← | putative tRNA synthetase |
| RA | 163,255 | T→C | V399A (GTG→GCG) | hrpB → | ATP‑dependent helicase |
| RA | 170,527 | T→C | G250G (GGT→GGC) | fhuC → | ATP‑binding component of hydroxymate‑dependent iron transport |
| RA | 176,432 | A→G | K442K (AAA→AAG) | yadQ → | putative channel transporter |
| RA | 187,433 | A→G | H406H (CAT→CAC) | glnD ← | protein PII |
| RA | 188,442 | T→C | Q70R (CAG→CGG) | glnD ← | protein PII |
| RA | 200,335 | A→G | Q803R (CAG→CGG) | yaeT → | hypothetical protein |
| RA | 207,737 | C→T | T871I (ACC→ATC) | dnaE → | DNA polymerase III alpha subunit |
| RA | 260,837 | A→G | A37A (GCA→GCG) | proA → | gamma‑glutamylphosphate reductase |
| RA | 261,908 | T→C | R394R (CGT→CGC) | proA → | gamma‑glutamylphosphate reductase |
| RA | 282,839 | G→A | A139T (GCG→ACG) | yagF → | putative dehydratase |
| RA | 286,179 | A→G | D56G (GAC→GGC) | yagH → | putative beta‑xylosidase |
| RA | 300,714 | A→G | L133P (CTG→CCG) | yagS ← | hypothetical protein |
| RA | 308,315 | A→G | L81P (CTG→CCG) | yagX ← | hypothetical protein |
| RA | 323,547 | C→T | A189V (GCC→GTC) | ykgG → | putative transporter |
| RA | 337,988 | C→T | P147L (CCG→CTG) | yahG → | hypothetical protein |
| RA | 342,435 | A→G | M110V (ATG→GTG) | yahK → | putative oxidoreductase |
| RA | 373,904 | A→G | R271R (CGA→CGG) | mhpE → | 4‑hydroxy‑2‑ketovalerate aldolase |
| RA | 375,923 | A→G | intergenic (+29/‑73) | mhpT → / → yaiL | putative transport protein/nucleoprotein/polynucleotide‑associated enzyme |
| RA | 405,386 | C→T | R173R (CGC→CGT) | yaiI → | hypothetical protein |
| RA | 418,134 | T→C | V341A (GTA→GCA) | phoR → | positive and negative sensor protein for pho regulon |
| RA | 419,777 | C→T | L321L (CTC→CTT) | brnQ → | branched chain amino acid transport system II carrier protein |
| RA | 431,523 | T→C | intergenic (‑286/+13) | tsx ← / ← yajI | Tsx/hypothetical protein |
| RA | 484,839 | T→G | N2T (AAC→ACC) | acrA ← | acridine efflux pump |
| RA | 502,653 | C→T | intergenic (‑191/+47) | ybaL ← / ← fsr | putative transport protein/fosmidomycin resistance protein |
| RA | 513,506 | A→G | E97G (GAG→GGG) | ybbI → | putative transcriptional regulator |
| RA | 535,281 | A→G | E116E (GAA→GAG) | gip → | glyoxylate‑induced protein |
| RA | 540,420 | A→G | Y211C (TAC→TGC) | ybbY → | putative transport |
| RA | 547,694 | A→G | E38E (GAA→GAG) | b4507 → | hypothetical protein |
| RA | 547,835 | +G | coding (255/261 nt) | b4507 → | hypothetical protein |
| RA | 575,662 | A→G | T149T (ACT→ACC) | nmpC ← | outer membrane porin protein |
| RA | 588,625 | A→G | V518A (GTA→GCA) | nfrA ← | NfrA |
| RA | 625,013 | (C)5→4 | coding (906/1176 nt) | entC → | isochorismate hydroxymutase 2 |
| RA | 643,426 | A→G | G267G (GGT→GGC) | rna ← | RNase I |
| RA | 654,248 | A→G | M315T (ATG→ACG) | dcuC ← | DcuC |
| RA | 660,762 | A→G | intergenic (‑161/+98) | ybeF ← / ← lipB | putative transcriptional regulator LYSR‑type/LipB |
| RA | 698,096 | A→G | V102A (GTG→GCG) | asnB ← | asparagine synthetase B |
| RA | 704,236 | T→C | L357S (TTG→TCG) | nagE → | PTS system, N‑acetylglucosamine‑specific enzyme IIABC |
| RA | 727,030 | A→G | L309P (CTG→CCG) | kdpA ← | KdpA |
| RA | 742,023 | A→G | intergenic (‑244/‑27) | ybgH ← / → ybgI | putative transport protein/hypothetical protein |
| RA | 747,172 | A→G | V345A (GTG→GCG) | ybgO ← | hypothetical protein |
| RA | 767,322 | T→C | L41P (CTG→CCG) | ybgG → | putative sugar hydrolase |
| RA | 768,447 | A→G | D416G (GAC→GGC) | ybgG → | putative sugar hydrolase |
| RA | 782,054 | T→C | A249A (GCT→GCC) | nadA → | quinolinate synthetase A protein |
| RA | 789,507 | T→C | D249G (GAC→GGC) | galT ← | galactose‑1‑phosphate uridylyltransferase |
| RA | 854,026 | T→C | intergenic (+38/+21) | ybiR → / ← ybiS | hypothetical protein/hypothetical protein |
| RA | 860,895 | G→A | A312V (GCC→GTC) | ybiW ← | putative formate acetyltransferase |
| RA | 907,912 | T→C | P202P (CCA→CCG) | ybjU ← | putative arylsulfatase |
| RA | 908,998 | A→G | R425R (CGT→CGC) | poxB ← | pyruvate oxidase |
| RA | 926,255 | A→G | V134A (GTC→GCC) | aat ← | leucyl, phenylalanyl‑tRNA‑protein transferase |
| RA | 964,158 | T→C | L206L (TTA→CTA) | ycaI → | hypothetical protein |
| RA | 966,971 | A→G | G376G (GGA→GGG) | msbA → | ATP‑binding transport protein |
| RA | 967,279 | T→C | V479A (GTG→GCG) | msbA → | ATP‑binding transport protein |
| RA | 971,671 | T→C | F233L (TTC→CTC) | b0919 → | hypothetical protein |
| RA | 976,048 | A→G | Q167R (CAG→CGG) | mukB → | MukB |
| RA | 981,275 | (G)5→6 | coding (1006/1848 nt) | ycbB → | putative amidase |
| RA | 997,353 | T→C | V91A (GTA→GCA) | ycbQ → | putative fimbrial‑like protein |
| RA | 998,008 | A→G | Y99C (TAC→TGC) | ycbR → | putative chaperone |
| RA | 998,257 | A→G | D182G (GAC→GGC) | ycbR → | putative chaperone |
| RA | 1,015,360 | C→T | V112M (GTG→ATG) | fabA ← | beta‑hydroxydecanoyl thioester dehydrase |
| RA | 1,018,581 | C→T | P232P (CCG→CCA) | ompA ← | outer membrane protein 3a |
| RA | 1,027,127 | T→C | intergenic (‑131/‑42) | b0964 ← / → b0965 | hypothetical protein/hypothetical protein |
| RA | 1,052,306 | G→A | P94S (CCG→TCG) | yccM ← | hypothetical protein |
| RA | 1,056,041 | A→G | E186E (GAA→GAG) | torT → | TorT |
| RA | 1,057,591 | A→G | E95E (GAA→GAG) | torC → | trimethylamine N‑oxide reductase, cytochrome c‑type subunit |
| RA | 1,063,438 | T→C | D60D (GAT→GAC) | yccE → | hypothetical protein |
| RA | 1,067,720 | +C | intergenic (+243/+14) | b4516 → / ← ycdG | hypothetical protein/putative transport protein |
| RA | 1,070,080 | T→C | L33L (TTA→TTG) | b1008 ← | hypothetical protein |
| RA | 1,078,438 | T→C | intergenic (‑333/‑90) | putA ← / → putP | proline dehydrogenase/major sodium/proline symporter |
| RA | 1,097,622 | T→C | W185R (TGG→CGG) | ycdW → | putative dehydrogenase |
| RA | 1,097,684 | G→A | R205R (CGG→CGA) | ycdW → | putative dehydrogenase |
| RA | 1,115,717 | A→G | V30A (GTG→GCG) | htrB ← | heat shock protein |
| RA | 1,132,866 | A→G | N357S (AAC→AGC) | flgE → | hook protein |
| RA | 1,135,559 | T→C | R22R (CGT→CGC) | flgI → | FlgI |
| RA | 1,142,316 | A→G | R425R (CGT→CGC) | rne ← | RNase E |
| RA | 1,151,521 | A→G | T120T (ACA→ACG) | fabF → | 3‑oxoacyl‑[acyl‑carrier‑protein] synthase II |
| RA | 1,158,530 | T→C | intergenic (+5/+55) | ptsG → / ← fhuE | PTS system, glucose‑specific IIBC component/outer membrane receptor for ferric iron uptake |
| RA | 1,161,046 | A→G | intergenic (‑272/‑44) | fhuE ← / → ycfF | outer membrane receptor for ferric iron uptake/hypothetical protein |
| RA | 1,230,757 | A→G | T117A (ACT→GCT) | umuC → | UmuC |
| RA | 1,233,954 | A→G | intergenic (‑14/‑207) | nhaB ← / → fadR | Na+/H+ antiporter, pH independent/FadR |
| RA | 1,254,408 | A→G | S256S (AGT→AGC) | b1202 ← | putative adhesion and penetration protein |
| RA | 1,256,863 | A→G | V58A (GTA→GCA) | ychF ← | putative GTP‑binding protein |
| RA | 1,302,782 | A→G | N2S (AAC→AGC) | oppD → | OppD |
| RA | 1,335,418 | A→G | S522G (AGC→GGC) | acnA → | aconitate hydrase 1 |
| RA | 1,346,591 | G→A | R116C (CGT→TGT) | rnb ← | RNase II |
| RA | 1,368,442 | C→T | T68I (ACA→ATA) | ycjM → | putative polysaccharide hydrolase |
| RA | 1,373,005 | A→G | T7A (ACA→GCA) | ycjQ → | putative oxidoreductase |
| RA | 1,418,817 | (G)6→7 | coding (110/423 nt) | ydaT → | hypothetical protein |
| RA | 1,440,689 | A→G | V60A (GTG→GCG) | ldhA ← | fermentative D‑lactate dehydrogenase, NAD‑dependent |
| RA | 1,442,877 | A→G | A601A (GCA→GCG) | ydbH → | hypothetical protein |
| RA | 1,444,274 | T→C | intergenic (+44/+128) | ydbL → / ← feaR | hypothetical protein/FeaR |
| RA | 1,483,110 | A→G | T676A (ACC→GCC) | hrpA → | helicase, ATP‑dependent |
| RA | 1,499,704 | G→A | G40D (GGC→GAC) | tehB → | TehB |
| RA | 1,537,704 | A→G | W971R (TGG→CGG) | narZ ← | cryptic nitrate reductase 2 alpha subunit |
| RA | 1,542,294 | A→G | intergenic (‑210/+114) | narU ← / ← b1470 | nitrite extrusion protein 2/hypothetical protein |
| RA | 1,548,806 | T→C | C108R (TGC→CGC) | fdnH → | formate dehydrogenase‑N, nitrate‑inducible, iron‑sulfur beta subunit |
| RA | 1,572,242 | T→C | I329V (ATT→GTT) | pqqL ← | putative peptidase |
| RA | 1,599,629 | T→C | V39A (GTC→GCC) | b1513 → | putative ATP‑binding component of a transport system |
| RA | 1,601,638 | T→C | L199P (CTG→CCG) | ydeY → | putative transport system permease protein |
| RA | 1,607,710 | A→G | L332P (CTT→CCT) | uxaB ← | altronate oxidoreductase |
| RA | 1,625,295 | T→C | Q37R (CAG→CGG) | dcp ← | dipeptidyl carboxypeptidase II |
| RA | 1,638,567 | T→C | T15A (ACA→GCA) | b1556 ← | hypothetical protein |
| RA | 1,641,525 | T→C | T281T (ACA→ACG) | b1560 ← | hypothetical protein |
| RA | 1,650,355 | T→C | F274L (TTC→CTC) | b1579 → | putative transposase |
| RA | 1,652,626 | T→C | E180E (GAA→GAG) | rspA ← | starvation sensing protein |
| RA | 1,664,234 | C→T | A319V (GCC→GTC) | b1592 → | putative chloride channel |
| RA | 1,691,459 | T→C | T277A (ACT→GCT) | uidB ← | glucuronide permease |
| RA | 1,712,001 | T→C | G403G (GGT→GGC) | ydgR → | putative transport protein |
| RA | 1,717,544 | T→C | H28R (CAC→CGC) | b1640 ← | hypothetical protein |
| RA | 1,718,191 | A→G | T98A (ACT→GCT) | slyB → | putative outer membrane protein |
| RA | 1,722,918 | T→A | N247Y (AAC→TAC) | b1647 ← | hypothetical protein |
| RA | 1,739,051 | A→G | M373V (ATG→GTG) | ydhC → | putative transport protein |
| RA | 1,741,574 | 2 bp→GA | coding (94‑95/1374 nt) | ydhE → | putative transport protein |
| RA | 1,802,307 | A→G | S397G (AGC→GGC) | b1721m → | ankyrin repeat protein |
| RA | 1,804,677 | T→C | V96A (GTA→GCA) | pfkB → | 6‑phosphofructokinase II |
| RA | 1,812,482 | T→C | F198L (TTC→CTC) | katE → | catalase |
| RA | 1,860,370 | T→C | E28E (GAA→GAG) | yeaA ← | hypothetical protein |
| RA | 1,866,277 | T→C | V449A (GTC→GCC) | yeaG → | hypothetical protein |
| RA | 1,879,281 | T→C | T185A (ACC→GCC) | yeaT ← | putative transcriptional regulator LYSR‑type |
| RA | 1,881,204 | T→C | intergenic (+183/‑8) | yeaU → / → yeaV | putative tartrate dehydrogenase/putative transport protein |
| RA | 1,884,815 | G→A | R316H (CGC→CAC) | yeaX → | putative diogenase beta subunit |
| RA | 1,889,990 | T→A | S424C (AGC→TGC) | b1808 ← | hypothetical protein |
| RA | 1,893,920 | T→C | G364G (GGT→GGC) | pabB → | p‑aminobenzoate synthetase component I |
| RA | 1,900,472 | T→C | V134A (GTT→GCT) | manX → | PTS enzyme IIAB, mannose‑specific |
| RA | 1,914,464 | Δ1 bp | coding (183/1284 nt) | b1833 → | hypothetical protein |
| RA | 1,920,554 | T→C | D147G (GAT→GGT) | b1838 ← | protein phosphatase 1 |
| RA | 1,924,467 | T→C | P108P (CCT→CCC) | b1844 → | hypothetical protein |
| RA | 1,929,521 | T→C | L206P (CTG→CCG) | purT → | phosphoribosylglycinamide formyltransferase 2 |
| RA | 1,953,793 | T→C | G413G (GGA→GGG) | b1872 ← | biotin sulfoxide reductase 2 |
| RA | 1,963,151 | A→G | A355A (GCT→GCC) | flhB ← | FlhB |
| MC JC | 1,976,527 | Δ776 bp | insB5–insA5 | insB5, insA5 | |
| RA | 1,980,940 | +C | coding (1/363 nt) coding (627/627 nt) |
araH ← araH ← |
ABC‑type arabinose transport system permease component ABC‑type arabinose transport system permease component |
| RA | 1,996,614 | T→C | D297G (GAC→GGC) | b1919 ← | putative 1‑aminocyclopropane‑1‑carboxylate deaminase |
| RA | 2,008,480 | +A | coding (637/654 nt) | yedK → | hypothetical protein |
| RA | 2,011,668 | A→G | T140A (ACC→GCC) | fliF → | FliF |
| RA | 2,012,544 | A→G | S432G (AGT→GGT) | fliF → | FliF |
| RA | 2,012,638 | T→C | V463A (GTG→GCG) | fliF → | FliF |
| RA | 2,043,272 | A→G | S130G (AGT→GGT) | b1978 → | hypothetical protein |
| RA | 2,072,030 | T→A | C824S (TGC→AGC) | b2000 → | outer membrane fluffing protein |
| RA | 2,072,384 | (C)6→7 | coding (2824/3120 nt) | b2000 → | outer membrane fluffing protein |
| RA | 2,072,439 | A→G | Q960R (CAG→CGG) | b2000 → | outer membrane fluffing protein |
| RA | 2,082,410 | T→C | A22A (GCA→GCG) | yeeD ← | hypothetical protein |
| RA | 2,084,512 | A→G | R193R (CGT→CGC) | yeeF ← | putative amino acid/amine transport protein |
| RA | 2,102,336 | A→G | W66R (TGG→CGG) | wbbK ← | putative glucose transferase |
| RA | 2,153,206 | T→C | V439A (GTG→GCG) | b2074 → | putative membrane protein |
| RA | 2,155,098 | T→C | L605P (CTG→CCG) | yegN → | hypothetical protein |
| RA | 2,183,895 | (G)7→8 | intergenic (‑79/‑42) | yohL ← / → yohM | hypothetical protein/hypothetical protein |
| RA | 2,197,577 | T→C | intergenic (+3224/‑722) | metG → / → yehI | methionine tRNA synthetase/putative regulator |
| RA | 2,216,746 | G→C | S252S (TCC→TCG) | yehZ ← | putative transport system permease protein |
| RA | 2,235,796 | T→C | H505R (CAC→CGC) | mglA ← | MglA |
| RA | 2,260,454 | A→G | G354G (GGT→GGC) | fruB ← | PTS system, fructose‑specific IIA/fpr component |
| RA | 2,332,579 | A→G | L134P (CTG→CCG) | b2229 ← | hypothetical protein |
| RA | 2,403,601 | T→C | intergenic (‑515/+122) | b2288 ← / ← lrhA | NADH dehydrogenase I chain A/NADH dehydrogenase transcriptional regulator, LysR family |
| RA | 2,404,897 | A→G | intergenic (‑236/‑684) | lrhA ← / → b2290 | NADH dehydrogenase transcriptional regulator, LysR family/putative aminotransferase |
| RA | 2,416,514 | A→G | R479G (AGG→GGG) | yfcC → | putative S‑transferase |
| RA | 2,419,101 | T→C | L154P (CTG→CCG) | yfcG → | putative S‑transferase |
| RA | 2,424,788 | C→T | S7S (TCG→TCA) | hisJ ← | histidine‑binding periplasmic protein of high‑affinity histidine transport system |
| RA | 2,429,483 | T→C | E65E (GAA→GAG) | dedD ← | putative lipoprotein |
| RA | 2,443,258 | A→G | V108A (GTC→GCC) | yfcA ← | putative structural protein |
| RA | 2,457,232 | T→C | T420A (ACC→GCC) | b2342 ← | putative acyltransferase |
| RA | 2,462,885 | T→C | D48G (GAC→GGC) | vacJ ← | lipoprotein precursor |
| RA | 2,475,572 | A→G | A26A (GCT→GCC) | dsdC ← | D‑serine dehydratase (deaminase) transcriptional activator |
| RA | 2,481,497 | (A)8→9 | intergenic (‑138/‑278) | emrK ← / → evgA | multidrug resistance protein K/EvgA |
| RA | 2,511,347 | T→C | C96R (TGC→CGC) | nupC → | NupC |
| RA | 2,516,832 | T→C | intergenic (+1/‑1) | yfeC → / → yfeD | hypothetical protein/hypothetical protein |
| RA | 2,528,223 | (C)5→6 | intergenic (‑27/+44) | lig ← / ← zipA | DNA ligase/ZipA |
| RA | 2,539,912 | A→G | R207R (CGT→CGC) | cysU ← | sulfate, thiosulfate transport system permease T protein |
| RA | 2,547,949 | T→C | D206G (GAC→GGC) | b2431 ← | hypothetical protein |
| RA | 2,548,787 | A→G | C150C (TGT→TGC) | b2432 ← | hypothetical protein |
| RA | 2,551,423 | T→C | V60A (GTC→GCC) | hemF → | coproporphyrinogen III oxidase |
| RA | 2,555,797 | G→A | G301G (GGC→GGT) | b2441 ← | ethanolamine ammonia‑lyase, heavy chain |
| RA | 2,563,970 | A→G | V312A (GTG→GCG) | b2451 ← | hypothetical protein |
| RA | 2,567,072 | T→C | I154V (ATT→GTT) | b2453 ← | EutG |
| RA | 2,606,063 | T→C | M376T (ATG→ACG) | hyfF → | hydrogenase 4 membrane subunit |
| RA | 2,620,459 | G→A | R69Q (CGG→CAG) | purN → | phosphoribosylglycinamide formyltransferase 1 |
| RA | 2,622,267 | T→C | L402L (TTA→CTA) | ppk → | polyphosphate kinase |
| RA | 2,627,257 | T→C | A12A (GCA→GCG) | b4538 ← | hypothetical protein |
| RA | 2,627,313 | A→G | S2G (AGT→GGT) | b2504 → | hypothetical protein |
| RA | 2,633,072 | T→C | V274A (GTG→GCG) | xseA → | exonuclease VII large subunit |
| RA | 2,640,478 | A→G | G129G (GGT→GGC) | yfgA ← | putative membrane protein |
| RA | 2,641,750 | A→G | L185P (CTG→CCG) | yfgB ← | hypothetical protein |
| RA | 2,656,335 | G→A | D207D (GAC→GAT) | hscA ← | HscA |
| RA | 2,664,389 | T→C | V319A (GTC→GCC) | csiE → | hypothetical protein |
| RA | 2,676,851 | A→G | R179R (CGT→CGC) | yphF ← | putative LACI‑type transcriptional regulator |
| RA | 2,691,024 | A→T | F847Y (TTT→TAT) | purL ← | phosphoribosylformyl‑glycineamide synthetase |
| RA | 2,722,352 | (G)5→6 | coding (154/273 nt) | yfiM → | hypothetical protein |
| RA | 2,729,373 | +C | intergenic (‑195/+247) | rrsG ← / ← clpB | 16S ribosomal RNA/ClpB |
| RA | 2,735,727 | C→T | intergenic (+61/‑38) | pheL → / → pheA | PheL/chorismate mutase‑P |
| RA | 2,737,047 | T→C | H348R (CAC→CGC) | tyrA ← | chorismate mutase‑T |
| RA | 2,747,389 | Δ1 bp | coding (572/591 nt) | b4540 → | hypothetical protein |
| RA | 2,751,091 | G→C | A426P (GCT→CCT) | recN → | RecN |
| RA | 2,754,173 | A→G | intergenic (+774/‑7) | smpB → / → intA | small protein B/prophage CP4‑57 integrase |
| RA | 2,760,511 | A→T | W351R (TGG→AGG) | yfjK ← | hypothetical protein |
| RA | 2,766,382 | C→G | P218A (CCC→GCC) | b2632 → | putative GTP‑binding protein |
| RA | 2,766,423 | G→A | R231R (CGG→CGA) | b2632 → | putative GTP‑binding protein |
| RA | 2,766,427 | 2 bp→AC | coding (697‑698/864 nt) | b2632 → | putative GTP‑binding protein |
| RA | 2,766,473 | A→G | D248G (GAT→GGT) | b2632 → | putative GTP‑binding protein |
| RA | 2,766,475 | A→G | T249A (ACC→GCC) | b2632 → | putative GTP‑binding protein |
| RA | 2,781,020 | +G | intergenic (‑144/+65) | ypjA ← / ← b2648 | putative ATP‑binding component of a transport system/hypothetical protein |
| RA | 2,781,027 | C→G | intergenic (‑151/+58) | ypjA ← / ← b2648 | putative ATP‑binding component of a transport system/hypothetical protein |
| RA | 2,783,519 | T→C | intergenic (+147/+263) | b2651 → / ← ileY | hypothetical protein/tRNA‑Ile |
| RA | 2,785,180 | Δ1 bp | coding (413/495 nt) | b2655 → | hypothetical protein |
| RA | 2,812,859 | Δ1 bp | intergenic (‑105/+46) | ygaG ← / ← gshA | hypothetical protein/gamma‑glutamate‑cysteine ligase |
| RA | 2,820,144 | Δ1 bp | intergenic (+24/+18) | b4542 → / ← oraA | hypothetical protein/OraA |
| RA | 2,820,999 | T→G | Y265S (TAC→TCC) | recA ← | RecA |
| RA | 2,821,415 | T→C | A126A (GCA→GCG) | recA ← | RecA |
| RA | 2,823,915 | A→G | K21E (AAG→GAG) | srlA → | PTS system, glucitol/sorbitol‑specific IIC component |
| RA | 2,824,797 | T→C | F128S (TTT→TCT) | srlE → | PTS system glucitol/sorbitol‑specific enzyme IIBC component |
| RA | 2,825,102 | T→C | F230L (TTC→CTC) | srlE → | PTS system glucitol/sorbitol‑specific enzyme IIBC component |
| RA | 2,827,236 | T→C | V56A (GTG→GCG) | srlR → | SrlR |
| RA | 2,838,044 | +G | coding (498/1458 nt) | ascF → | PTS system enzyme IIBC |
| RA | 2,838,055 | Δ1 bp | coding (509/1458 nt) | ascF → | PTS system enzyme IIBC |
| RA | 2,842,033 | G→T | R67R (CGC→CGA) | hycG ← | hydrogenase activity |
| RA | 2,856,140 | T→A | L342Q (CTG→CAG) | mutS → | MutS |
| RA | 2,865,844 | A→G | G311G (GGT→GGC) | nlpD ← | lipoprotein |
| RA | 2,896,819 | +C | coding (622/657 nt) | ygcU ← | putative oxidoreductase subunit |
| RA | 2,906,235 | C→T | G485D (GGT→GAT) | pyrG ← | CTP synthetase |
| RA | 2,939,218 | G→A | C16C (TGC→TGT) | ygdE ← | hypothetical protein |
| RA | 2,941,717 | A→G | H120R (CAC→CGC) | b2810 → | hypothetical protein |
| RA | 2,959,806 | A→G | G215G (GGT→GGC) | recC ← | RecC |
| RA | 2,963,192 | C→T | V290I (GTT→ATT) | lgt ← | phosphatidylglycerol‑prolipoprotein diacylglyceryl transferase |
| RA | 2,963,236 | A→G | V275A (GTG→GCG) | lgt ← | phosphatidylglycerol‑prolipoprotein diacylglyceryl transferase |
| RA | 2,972,555 | A→G | S494S (AGT→AGC) | aas ← | 2‑acyl‑glycerophospho‑ethanolamine acyltransferase |
| RA | 2,976,431 | T→C | H164R (CAC→CGC) | lysA ← | diaminopimelate decarboxylase |
| RA | 2,998,394 | A→G | T10A (ACC→GCC) | b2866 → | hypothetical protein |
| RA | 3,005,399 | +C | coding (1044/1092 nt) | ygeW → | putative carbamoyl transferase |
| RA | 3,011,187 | T→C | E358E (GAA→GAG) | b2875 ← | putative synthases |
| RA | 3,015,070 | T→C | G330G (GGT→GGC) | b2878 → | putative oxidoreductase Fe‑S subunit |
| RA | 3,021,627 | T→C | V764A (GTT→GCT) | b2881 → | putative dehydrogenase |
| RA | 3,021,808 | T→C | R824R (CGT→CGC) | b2881 → | putative dehydrogenase |
| RA | 3,025,676 | +C | coding (535/570 nt) | ygfQ → | hypothetical protein |
| RA | 3,026,175 | A→G | V166V (GTA→GTG) | ygfR → | putative oxidoreductase |
| RA | 3,032,764 | C→T | R144H (CGT→CAT) | lysS ← | lysine tRNA synthetase |
| RA | 3,037,475 | T→C | S97G (AGT→GGT) | xerD ← | XerD |
| RA | 3,054,906 | A→G | intergenic (+97/+292) | b2912 → / ← serA | putative ligase/D‑3‑phosphoglycerate dehydrogenase |
| RA | 3,058,415 | A→G | S215G (AGC→GGC) | iciA → | replication initiation inhibitor |
| RA | 3,075,220 | (T)5→6 | coding (256/357 nt) | yggP ← | hypothetical protein |
| RA | 3,077,514 | Δ1 bp | intergenic (‑165/+149) | cmtB ← / ← tktA | PTS system mannitol‑specific enzyme IIA component/transketolase 1 isozyme |
| RA | 3,077,640 | +G | intergenic (‑291/+23) | cmtB ← / ← tktA | PTS system mannitol‑specific enzyme IIA component/transketolase 1 isozyme |
| RA | 3,077,905 | A→G | S584P (TCG→CCG) | tktA ← | transketolase 1 isozyme |
| RA | 3,078,245 | C→G | G470G (GGG→GGC) | tktA ← | transketolase 1 isozyme |
| RA | 3,084,101 | T→C | intergenic (‑16/‑105) | yqgB ← / → yqgC | hypothetical protein/hypothetical protein |
| RA | 3,099,661 | (A)5→6 | intergenic (‑19/+164) | yggN ← / ← b2959 | hypothetical protein/hypothetical protein |
| RA | 3,107,469 | +C | intergenic (‑296/‑101) | b2965 ← / → yqgA | ornithine decarboxylase isozyme/putative transport protein |
| RA | 3,108,438 | C→A | noncoding (56/76 nt) | pheV → | tRNA‑Phe |
| RA | 3,108,630 | G→A | R172W (CGG→TGG) | yghD ← | putative secretion pathway protein |
| RA | 3,115,116 | +C | coding (2013/2028 nt) | b2974 ← | putative endoglucanase |
| RA | 3,123,585 | +G | coding (953/2286 nt) | glcF ← | glycolate oxidase iron‑sulfur subunit |
| RA | 3,127,865 | T→C | A122A (GCA→GCG) | b2981 ← | hypothetical protein |
| RA | 3,130,334 | A→G | V30V (GTT→GTC) | b2983 ← | hypothetical protein |
| RA | 3,152,247 | +C | intergenic (+10/+29) | yghB → / ← yqhC | hypothetical protein/putative ARAC‑type regulatory protein |
| JC | 3,156,257 | (CCA)2→1 | coding (594‑596/930 nt) | yqhG → | hypothetical protein |
| RA | 3,158,202 | +C | coding (961/975 nt) | ygiRQ ← | Fe‑S oxidoreductase |
| RA | 3,166,935 | 2 bp→CG | coding (312‑313/483 nt) | b3023 ← | hypothetical protein |
| RA | 3,174,443 | T→C | H136R (CAC→CGC) | icc ← | Icc |
| RA | 3,175,745 | A→G | V61A (GTC→GCC) | yqiE ← | hypothetical protein |
| RA | 3,179,042 | T→C | A202A (GCT→GCC) | ygiC → | putative synthetase/amidase |
| RA | 3,185,776 | T→C | F121L (TTC→CTC) | yqiG → | putative membrane protein |
| RA | 3,185,807 | T→C | F131S (TTT→TCT) | yqiG → | putative membrane protein |
| RA | 3,190,907 | T→C | S10P (TCC→CCC) | b3051 → | putative membrane protein |
| RA | 3,205,532 | T→C | L174P (CTG→CCG) | ttdB → | L‑tartrate dehydratase subunit B |
| RA | 3,208,420 | A→G | intergenic (‑236/‑2) | ygjD ← / → rpsU | putative O‑sialoglycoprotein endopeptidase/30S ribosomal subunit protein S21 |
| RA | 3,210,997 | G→A | E104K (GAA→AAA) | rpoD → | RNA polymerase sigma(70) |
| RA | 3,212,429 | A→G | D581G (GAC→GGC) | rpoD → | RNA polymerase sigma(70) |
| RA | 3,221,097 | 2 bp→GC | coding (824‑825/3093 nt) | b3076 → | evolved beta‑D‑galactosidase alpha subunit |
| RA | 3,222,944 | 4 bp→AGCA | coding (2671‑2674/3093 nt) | b3076 → | evolved beta‑D‑galactosidase alpha subunit |
| RA | 3,224,879 | Δ1 bp | coding (1005/1434 nt) | ygjI → | putative oxidoreductase |
| RA | 3,224,926 | +C | coding (1052/1434 nt) | ygjI → | putative oxidoreductase |
| RA | 3,236,177 | Δ1 bp | intergenic (+239/‑45) | ygjR → / → ygjT | hypothetical protein/putative transport protein |
| RA | 3,236,735 | +C | coding (514/966 nt) | ygjT → | putative transport protein |
| RA | 3,236,758 | Δ1 bp | coding (537/966 nt) | ygjT → | putative transport protein |
| RA | 3,237,242 | +C | intergenic (+55/‑342) | ygjT → / → ygjU | putative transport protein/putative transport protein |
| RA | 3,237,247 | +C | intergenic (+60/‑337) | ygjT → / → ygjU | putative transport protein/putative transport protein |
| RA | 3,253,742 | Δ1 bp | coding (551/552 nt) | yhaNM ← | hypothetical protein |
| RA | 3,255,594 | Δ1 bp | coding (4/1278 nt) | yhaO ← | putative transport system permease protein |
| RA | 3,255,616 | Δ1 bp | intergenic (‑19/+312) | yhaO ← / ← yhaP | putative transport system permease protein/putative L‑serine dehydratase |
| RA | 3,256,893 | +C | coding (405/423 nt) | yhaQ ← | putative L‑serine dehydratase |
| RA | 3,257,838 | +G | coding (2222/2241 nt) | tdcE ← | putative formate acetyltransferase 3 |
| RA | 3,265,441 | T→C | intergenic (+202/‑33) | tdcR → / → yhaB | threonine dehydratase operon activator protein/hypothetical protein |
| RA | 3,268,129 | (C)7→8 | intergenic (+661/+137) | b3122 → / ← b3124 | hypothetical protein/hypothetical protein |
| RA | 3,279,197 | A→C | R145S (AGA→AGC) | agaA → | putative N‑acetylgalactosamine‑6‑phosphate deacetylase |
| RA | 3,300,826 | G→A | E239K (GAG→AAG) | yhbV → | hypothetical protein |
| RA | 3,311,437 | T→C | N740S (AAC→AGC) | infB ← | protein chain initiation factor IF‑2 |
| RA | 3,325,501 | T→C | L24P (CTT→CCT) | yhbY → | hypothetical protein |
| RA | 3,349,294 | T→C | Q456R (CAG→CGG) | arcB ← | aerobic respiration sensor‑response protein |
| RA | 3,352,254 | 2 bp→GC | intergenic (‑569/‑12) | yhcC ← / → gltB | hypothetical protein/glutamate synthase large subunit |
| RA | 3,359,814 | T→C | V23A (GTT→GCT) | yhcA → | putative chaperone |
| RA | 3,374,875 | T→G | T61P (ACC→CCC) | sspA ← | stringent starvation protein A |
| RA | 3,376,055 | T→C | T78A (ACC→GCC) | rplM ← | 50S ribosomal subunit protein L13 |
| RA | 3,389,812 | Δ1 bp | intergenic (‑149/+4151) | tldD ← / ← cafA | TldD/CafA |
| RA | 3,393,106 | Δ1 bp | intergenic (‑3443/+857) | tldD ← / ← cafA | TldD/CafA |
| RA | 3,395,276 | T→C | M59V (ATG→GTG) | cafA ← | CafA |
| RA | 3,418,840 | +G | coding (1070/1089 nt) | b3269 → | putative transport system permease protein |
| RA | 3,419,398 | (T)7→6 | coding (441/1107 nt) | yhdY → | putative transport system permease protein |
| RA | 3,421,120 | Δ1 bp | noncoding (60/121 nt) | rrfF ← | 5S ribosomal RNA |
| RA | 3,429,527 | Δ1 bp | coding (40/510 nt) | yrdD ← | putative DNA topoisomerase |
| RA | 3,430,453 | +C | coding (745/747 nt) | smf ← | putative Rossmann‑fold nucleotide‑binding protein |
| RA | 3,434,252 | G→A | G33D (GGT→GAT) | trkA → | TrkA |
| RA | 3,438,720 | T→C | H198R (CAC→CGC) | rpsD ← | 30S ribosomal subunit protein S4 |
| RA | 3,441,294 | G→A | G147G (GGC→GGT) | prlA ← | putative ATPase subunit of translocase |
| RA | 3,448,691 | A→G | I104T (ATC→ACC) | rplB ← | 50S ribosomal subunit protein L2 |
| RA | 3,450,175 | T→C | Q130R (CAG→CGG) | rplC ← | 50S ribosomal subunit protein L3 |
| RA | 3,457,218 | T→C | C415R (TGC→CGC) | yheG → | YheG |
| RA | 3,461,973 | T→C | C140R (TGC→CGC) | yheK → | putative export protein K |
| RA | 3,467,322 | A→G | C57R (TGC→CGC) | yheB ← | hypothetical protein |
| RA | 3,469,043 | A→G | G703G (GGT→GGC) | fusA ← | GTP‑binding protein chain elongation factor EF‑G |
| RA | 3,493,873 | T→G | R742R (CGT→CGG) | nirB → | nitrite reductase (NAD(P)H) subunit |
| RA | 3,499,227 | T→C | V115A (GTA→GCA) | yhfN → | putative transport protein |
| RA | 3,500,309 | Δ1 bp | coding (333/363 nt) | b3372 → | hypothetical protein |
| RA | 3,509,958 | Δ1 bp | intergenic (‑195/+314) | yhfZ ← / ← trpS | hypothetical protein/tryptophan tRNA synthetase |
| RA | 3,510,121 | +G | intergenic (‑358/+151) | yhfZ ← / ← trpS | hypothetical protein/tryptophan tRNA synthetase |
| RA | 3,533,109 | A→G | V133A (GTC→GCC) | envZ ← | protein histidine kinase |
| RA | 3,537,405 | +GC | intergenic (+61/‑394) | b3407 → / → feoA | hypothetical protein/ferrous iron transport protein A |
| RA | 3,544,357 | +G | coding (163/1314 nt) | gntT → | gluconate permease |
| RA | 3,544,360 | +G | coding (166/1314 nt) | gntT → | gluconate permease |
| RA | 3,544,363 | +C | coding (169/1314 nt) | gntT → | gluconate permease |
| RA | 3,548,005 | C→T | G701D (GGT→GAT) | malP ← | maltodextrin phosphorylase |
| RA | 3,553,975 | C→T | E171K (GAA→AAA) | yhgKJ ← | RNA phosphage cyclase |
| RA | 3,554,088 | +C | coding (2/624 nt) | yhgKJ ← | RNA phosphage cyclase |
| RA | 3,554,113 | Δ1 bp | coding (372/396 nt) | yhgKJ ← | RNA phosphage cyclase |
| RA | 3,554,118 | +C | coding (367/396 nt) | yhgKJ ← | RNA phosphage cyclase |
| RA | 3,556,855 | A→G | Q319R (CAG→CGG) | rtcR → | putative 2‑component regulator |
| RA | 3,558,932 | 2 bp→GC | coding (153‑154/831 nt) | glpG ← | GlpG |
| RA | 3,561,412 | A→G | V76A (GTG→GCG) | b3427 ← | hypothetical protein |
| RA | 3,562,795 | G→A | L474L (CTG→TTG) | glgP ← | glycogen phosphorylase |
| RA | 3,573,700 | +C | intergenic (+403/+997) | yhgN → / ← gntK | hypothetical protein/gluconokinase 2 |
| RA | 3,575,446 | +G | coding (912/942 nt) | gntR ← | GntR |
| RA | 3,588,160 | A→G | F128S (TTC→TCC) | ugpA ← | UgpA |
| RA | 3,591,480 | T→C | T120A (ACG→GCG) | livG ← | ATP‑binding component of high‑affinity branched‑chain amino acid transport system |
| RA | 3,602,257 | A→G | A78A (GCA→GCG) | yhhF → | hypothetical protein |
| RA | 3,610,376 | T→C | V294A (GTG→GCG) | b3474 → | hypothetical protein |
| RA | 3,627,142 | +G | intergenic (‑24/+23) | yhiH ← / ← yhiI | putative ATP‑binding component of a transport system, fragment 1/putative membrane protein |
| RA | 3,652,629 | A→G | Y106C (TAC→TGC) | yhiF → | hypothetical protein |
| RA | 3,675,983 | T→C | T5A (ACG→GCG) | yhjG ← | hypothetical protein |
| RA | 3,686,775 | +T | intergenic (‑23/+9) | b3530 ← / ← yhjM | putative oxidoreductase subunit/putative endoglucanase |
| RA | 3,700,934 | T→C | T182A (ACC→GCC) | dppD ← | putative ATP‑binding component of dipeptide transport system |
| RA | 3,703,602 | 2 bp→GC | intergenic (‑183/+124) | dppB ← / ← dppA | dipeptide transport system permease protein 1/dipeptide transport protein |
| RA | 3,703,857 | A→G | V493A (GTG→GCG) | dppA ← | dipeptide transport protein |
| RA | 3,707,653 | A→G | L162P (CTG→CCG) | yhjW ← | hypothetical protein |
| RA | 3,714,436 | 2 bp→GC | coding (261‑262/660 nt) | yiaD → | putative outer membrane protein |
| RA | 3,730,028 | G→A | G67R (GGA→AGA) | xylG → | putative ATP‑binding protein of xylose transport system |
| RA | 3,734,264 | 2 bp→GC | coding (542‑543/825 nt) | bax ← | putative ATP‑binding protein |
| RA | 3,737,956 | 2 bp→CG | coding (623‑624/1254 nt) | avtA → | alanine‑alpha‑ketoisovalerate transaminase |
| RA | 3,743,603 | Δ1 bp | coding (1171/1275 nt) | yiaN → | putative membrane protein |
| RA | 3,754,310 | C→A | R382M (AGG→ATG) | yiaY ← | putative oxidoreductase |
| JC | 3,754,317 | +GCG | coding (1138/1149 nt) | yiaY ← | putative oxidoreductase |
| RA | 3,765,203 | A→T | Q119L (CAG→CTG) | yibJ → | hypothetical protein |
| RA | 3,765,234 | G→A | G129G (GGG→GGA) | yibJ → | hypothetical protein |
| RA | 3,781,277 | A→G | R4R (CGT→CGC) | gpsA ← | glycerol‑3‑phosphate dehydrogenase (NAD+) |
| RA | 3,784,235 | A→G | Q450R (CAG→CGG) | yibO → | putative 2,3‑bisphosphoglycerate‑independent phosphoglycerate mutase |
| RA | 3,787,205 | (C)5→6 | coding (504/1035 nt) | yibD ← | putative regulator |
| RA | 3,791,003 | T→C | E108G (GAG→GGG) | htrL ← | HtrL |
| RA | 3,799,097 | T→C | Q177R (CAG→CGG) | rfaJ ← | UDP‑D‑glucose:(galactosyl)lipopolysaccharide glucosyltransferase |
| RA | 3,814,781 | T→A | L160Q (CTG→CAG) | yicC → | putative alpha helix protein |
| RA | 3,815,047 | T→C | F249L (TTC→CTC) | yicC → | putative alpha helix protein |
| RA | 3,851,179 | T→C | intergenic (‑564/‑364) | ivbL ← / → emrD | ilvB operon leader peptide/2‑module integral membrane pump |
| RA | 3,853,675 | A→G | L87P (CTG→CCG) | yidH ← | hypothetical protein |
| RA | 3,855,776 | G→A | R86C (CGC→TGC) | yidJ ← | putative sulfatase |
| RA | 3,870,631 | Δ1 bp | coding (610/1764 nt) | dgoA ← | 2‑oxo‑3‑deoxygalactonate 6‑phosphate aldolase |
| RA | 3,870,765 | +G | coding (476/1764 nt) | dgoA ← | 2‑oxo‑3‑deoxygalactonate 6‑phosphate aldolase |
| RA | 3,870,876 | Δ1 bp | coding (365/1764 nt) | dgoA ← | 2‑oxo‑3‑deoxygalactonate 6‑phosphate aldolase |
| RA | 3,872,450 | +G | coding (338/387 nt) | yidW ← | regulator protein for dgo operon |
| RA | 3,873,025 | A→G | intergenic (‑238/‑97) | yidW ← / → yidX | regulator protein for dgo operon/putative replicase |
| RA | 3,873,627 | Δ1 bp | coding (506/672 nt) | yidX → | putative replicase |
| RA | 3,876,595 | G→C | P385A (CCG→GCG) | gyrB ← | DNA gyrase subunit B |
| RA | 3,879,829 | T→C | T41A (ACG→GCG) | dnaN ← | DNA polymerase III beta‑subunit |
| RA | 3,881,483 | Δ1 bp | intergenic (‑126/‑482) | dnaA ← / → rpmH | DnaA/50S ribosomal subunit protein L34 |
| RA | 3,896,324 | +G | coding (698/711 nt) | b3718 ← | putative isomerase |
| RA | 3,908,031 | T→C | intergenic (‑5/+82) | pstC ← / ← pstS | PstC/PstS |
| RA | 3,919,891 | G→A | R64C (CGT→TGT) | atpI ← | membrane‑bound ATP synthase |
| RA | 3,926,344 | G→A | H240H (CAC→CAT) | yieM ← | hypothetical protein |
| RA | 3,927,062 | +G | coding (2/1284 nt) coding (169/183 nt) |
yieM ← b4564 ← |
hypothetical protein hypothetical protein |
| RA | 3,930,457 | Δ1 bp | coding (1515/1560 nt) | kup → | low affinity potassium transport system |
| RA | 3,930,568 | +G | intergenic (+66/‑373) | kup → / → rbsD | low affinity potassium transport system/RbsD |
| RA | 3,930,677 | +G | intergenic (+175/‑264) | kup → / → rbsD | low affinity potassium transport system/RbsD |
| RA | 3,936,574 | C→T | A241V (GCC→GTC) | rbsR → | RbsR |
| JC | 3,938,587 | +TGC | coding (220/546 nt) | yiePs ← | hypothetical protein |
| RA | 3,941,734 | A→G | noncoding (409/2906 nt) | rrlC → | 23S ribosomal RNA |
| RA | 3,941,738 | A→G | noncoding (413/2906 nt) | rrlC → | 23S ribosomal RNA |
| RA | 3,944,244 | C→A | intergenic (+13/‑80) | rrlC → / → rrfC | 23S ribosomal RNA/5S ribosomal RNA |
| RA | 3,944,676 | 2 bp→GC | intergenic (+20/+75) | trpT → / ← yifDA | tRNA‑Trp/transcription regulator |
| RA | 3,945,079 | A→G | S171S (AGT→AGC) | yifDA ← | transcription regulator |
| RA | 3,945,351 | +C | coding (1/600 nt) coding (240/240 nt) |
yifDA ← yifDA ← |
transcription regulator transcription regulator |
| RA | 3,950,557 | 2 bp→GC | coding (451‑452/930 nt) | ilvE → | branched‑chain amino‑acid aminotransferase |
| RA | 3,951,166 | +C | coding (35/1818 nt) | ilvD → | dihydroxyacid dehydratase |
| RA | 3,951,168 | +G | coding (37/1818 nt) | ilvD → | dihydroxyacid dehydratase |
| RA | 3,957,092 | +CC | intergenic (+26/+58) | ilvC → / ← ppiC | ketol‑acid reductoisomerase/peptidyl‑prolyl cis‑trans isomerase C |
| RA | 3,957,124 | +G | intergenic (+58/+26) | ilvC → / ← ppiC | ketol‑acid reductoisomerase/peptidyl‑prolyl cis‑trans isomerase C |
| RA | 3,957,548 | 1 bp→GG | intergenic (‑117/‑744) | ppiC ← / → rep | peptidyl‑prolyl cis‑trans isomerase C/rep helicase |
| RA | 3,957,551 | +T | intergenic (‑120/‑741) | ppiC ← / → rep | peptidyl‑prolyl cis‑trans isomerase C/rep helicase |
| RA | 3,957,560 | +C | intergenic (‑129/‑732) | ppiC ← / → rep | peptidyl‑prolyl cis‑trans isomerase C/rep helicase |
| RA | 3,958,877 | 2 bp→CG | coding (586‑587/2022 nt) | rep → | rep helicase |
| RA | 3,960,578 | 2 bp→CG | coding (1266‑1267/1485 nt) | gppA ← | guanosine pentaphosphatase |
| RA | 3,961,588 | C→G | R86T (AGG→ACG) | gppA ← | guanosine pentaphosphatase |
| RA | 3,964,819 | T→A | L263Q (CTG→CAG) | rho → | transcription termination factor Rho |
| JC | 3,968,317 | +CGT | coding (612/1170 nt) | wecB → | UDP‑N‑acetyl glucosamine ‑2‑epimerase |
| RA | 3,969,103 | 2 bp→GC | coding (232‑233/1263 nt) | wecC → | UDP‑N‑acetyl‑D‑mannosaminuronic acid dehydrogenase |
| RA | 3,971,075 | 2 bp→GC | coding (942‑943/1068 nt) | rffG → | dTDP‑glucose 4,6‑dehydratase |
| RA | 3,972,637 | 2 bp→GC | coding (430‑431/546 nt) | wecD → | hypothetical protein |
| RA | 3,973,752 | A→G | H332R (CAC→CGC) | wecE → | putative regulator |
| RA | 3,975,313 | Δ1 bp | intergenic (+173/‑901) | wzxE → / → wecF | putative cytochrome/TDP‑Fuc4NAc:lipidII transferase |
| RA | 3,978,702 | C→T | S68F (TCC→TTC) | yifK → | putative amino acid/amine transport protein |
| RA | 3,979,535 | +G | coding (1036/1386 nt) | yifK → | putative amino acid/amine transport protein |
| RA | 3,979,546 | Δ1 bp | coding (1047/1386 nt) | yifK → | putative amino acid/amine transport protein |
| RA | 3,980,297 | (C)8→9 | noncoding (79/87 nt) | leuT → | tRNA‑Leu |
| RA | 3,980,918 | 2 bp→CG | coding (348‑349/1236 nt) | aslB → | putative arylsulfatase regulator |
| RA | 3,987,546 | A→G | G285G (GGT→GGC) | hemC ← | porphobilinogen deaminase |
| RA | 3,987,586 | 2 bp→GC | coding (814‑815/963 nt) | hemC ← | porphobilinogen deaminase |
| RA | 3,987,822 | 2 bp→CG | coding (578‑579/963 nt) | hemC ← | porphobilinogen deaminase |
| RA | 3,989,493 | A→G | Y243C (TAC→TGC) | cyaA → | adenylate cyclase |
| RA | 3,990,760 | T→C | R665R (CGT→CGC) | cyaA → | adenylate cyclase |
| RA | 3,997,520 | A→G | E642G (GAA→GGA) | uvrD → | DNA‑dependent ATPase I and helicase II |
| RA | 3,998,290 | +G | coding (379/486 nt) | b4566 ← | hypothetical protein |
| RA | 4,001,421 | 2 bp→GC | coding (381‑382/903 nt) | rarD ← | hypothetical protein |
| RA | 4,001,486 | 2 bp→GC | coding (316‑317/903 nt) | rarD ← | hypothetical protein |
| RA | 4,001,717 | +C | coding (86/903 nt) | rarD ← | hypothetical protein |
| RA | 4,004,979 | +G | coding (1511/1833 nt) | recQ → | ATP‑dependent DNA helicase |
| RA | 4,004,984 | +CG | coding (1516/1833 nt) | recQ → | ATP‑dependent DNA helicase |
| RA | 4,005,601 | +C | coding (237/282 nt) | b4568 → | hypothetical protein |
| RA | 4,006,483 | +C | coding (183/207 nt) | b4554 ← | hypothetical protein |
| RA | 4,007,718 | 2 bp→CG | coding (943‑944/1023 nt) | pldB → | lysophospholipase L(2) |
| RA | 4,007,907 | +GG | intergenic (+109/‑11) | pldB → / → b4555 | lysophospholipase L(2)/hypothetical protein |
| RA | 4,008,375 | +A | coding (458/516 nt) | b4555 → | hypothetical protein |
| RA | 4,008,391 | +C | coding (474/516 nt) | b4555 → | hypothetical protein |
| RA | 4,008,393 | C→G | A159G (GCT→GGT) | b4555 → | hypothetical protein |
| RA | 4,008,400 | +GAAA | coding (483/516 nt) | b4555 → | hypothetical protein |
| RA | 4,008,404 | +G | coding (487/516 nt) | b4555 → | hypothetical protein |
| RA | 4,008,411 | +C | coding (494/516 nt) | b4555 → | hypothetical protein |
| RA | 4,008,421 | +T | coding (504/516 nt) | b4555 → | hypothetical protein |
| RA | 4,008,429 | +TG | coding (512/516 nt) | b4555 → | hypothetical protein |
| RA | 4,008,469 | +G | intergenic (+36/‑197) | b4555 → / → yigM | hypothetical protein/hypothetical protein |
| RA | 4,008,473 | +G | intergenic (+40/‑193) | b4555 → / → yigM | hypothetical protein/hypothetical protein |
| RA | 4,008,491 | 2 bp→CG | intergenic (+58/‑174) | b4555 → / → yigM | hypothetical protein/hypothetical protein |
| RA | 4,008,525 | +G | intergenic (+92/‑141) | b4555 → / → yigM | hypothetical protein/hypothetical protein |
| RA | 4,013,176 | C→G | G182R (GGA→CGA) | ysgA ← | hypothetical protein |
| RA | 4,013,177 | +C | coding (543/999 nt) | ysgA ← | hypothetical protein |
| RA | 4,013,717 | +G | coding (3/999 nt) | ysgA ← | hypothetical protein |
| RA | 4,013,772 | +C | intergenic (‑53/‑246) | ysgA ← / → udp | hypothetical protein/uridine phosphorylase |
| RA | 4,016,743 | C→T | P101L (CCC→CTC) | ubiE → | UbiE |
| RA | 4,019,857 | C→T | intergenic (+56/‑28) | b3836 → / → b3838 | hypothetical protein/hypothetical protein |
| RA | 4,019,860 | Δ2 bp | intergenic (+59/‑24) | b3836 → / → b3838 | hypothetical protein/hypothetical protein |
| RA | 4,021,684 | Δ1 bp | coding (542/609 nt)|coding (1/243 nt) | b4556 → tatD → |
hypothetical protein Mg‑dependent DNase |
| RA | 4,024,435 | A→G | I107V (ATT→GTT) | ubiB → | ferrisiderophore reductase |
| RA | 4,026,252 | 2 bp→GC | coding (110‑111/1164 nt) | fadA ← | thiolase I |
| RA | 4,030,374 | T→C | V98A (GTG→GCG) | b3848 → | hypothetical protein |
| RA | 4,031,984 | +C | coding (1250/1299 nt) | trkH → | TrkH |
| RA | 4,039,960 | Δ1 bp | intergenic (+42/‑36) | yihD → / → yihE | hypothetical protein/hypothetical protein |
| RA | 4,041,126 | A→G | E43G (GAG→GGG) | dsbA → | protein disulfide isomerase I |
| RA | 4,041,654 | G→A | intergenic (+29/‑125) | dsbA → / → b3861 | protein disulfide isomerase I/putative GTP‑binding protein |
| RA | 4,041,671 | (T)6→7 | intergenic (+46/‑108) | dsbA → / → b3861 | protein disulfide isomerase I/putative GTP‑binding protein |
| RA | 4,051,144 | Δ1 bp | intergenic (+146/+305) | hemN → / ← glnG | O2‑independent coproporphyrinogen III oxidase/GlnG |
| RA | 4,051,170 | +C | intergenic (+172/+279) | hemN → / ← glnG | O2‑independent coproporphyrinogen III oxidase/GlnG |
| RA | 4,057,759 | +C | coding (1773/1776 nt) | yihK → | putative GTP‑binding factor |
| RA | 4,061,961 | Δ1 bp | coding (1386/1458 nt) | b3876 ← | putative permease |
| RA | 4,065,486 | A→G | G457G (GGT→GGC) | yihQ ← | putative glycosidase |
| RA | 4,070,656 | T→C | M166V (ATG→GTG) | yihU ← | putative dehydrogenase |
| RA | 4,080,993 | T→C | T804A (ACT→GCT) | fdoG ← | formate dehydrogenase‑O, major subunit |
| RA | 4,083,016 | C→T | A129A (GCG→GCA) A129A (GCG→GCA) |
fdoG ← b4557 ← |
formate dehydrogenase‑O, major subunit hypothetical protein |
| RA | 4,085,675 | Δ1 bp | intergenic (+38/+13) | yiiG → / ← frvR | hypothetical protein/putative frv operon regulatory protein |
| RA | 4,091,351 | C→T | G168D (GGC→GAC) | rhaD ← | rhamnulose‑phosphate aldolase |
| MC JC | 4,091,572 | 3461 bp→29 bp | [rhaD]–rhaB | [rhaD], rhaA, rhaB | |
| RA | 4,103,519 | +T | intergenic (‑268/‑530) | cpxR ← / → yiiP | transcriptional regulator in 2‑component system/putative transport system permease protein |
| RA | 4,111,822 | T→C | P77P (CCA→CCG) | fpr ← | ferredoxin‑NADP reductase |
| RA | 4,139,669 | +C | coding (233/330 nt) coding (132/159 nt) |
yijI → b4558 ← |
hypothetical protein hypothetical protein |
| RA | 4,149,965 | A→G | V238A (GTC→GCC) | ppc ← | phosphoenolpyruvate carboxylase |
| RA | 4,154,554 | Δ1 bp | coding (126/1374 nt) | argH → | argininosuccinate lyase |
| RA | 4,158,827 | G→T | G61V (GGC→GTC) | yijC → | hypothetical protein |
| RA | 4,161,702 | C→G | A162G (GCA→GGA) | btuB → | BtuB |
| RA | 4,172,702 | A→G | intergenic (‑97/+90) | coaA ← / ← b3975 | pantothenate kinase/hypothetical protein |
| RA | 4,175,949 | +G | intergenic (+82/‑76) | nusG → / → rplK | NusG/50S ribosomal subunit protein L11 |
| RA | 4,177,348 | A→G | intergenic (+187/‑226) | rplA → / → rplJ | 50S ribosomal subunit protein L1/50S ribosomal subunit protein L10 |
| RA | 4,185,074 | A→T | Q716L (CAG→CTG) | rpoC → | RNA polymerase beta prime subunit |
| RA | 4,194,577 | 2 bp→GC | coding (97‑98/774 nt) | yjaD → | hypothetical protein |
| RA | 4,201,880 | A→G | Q328R (CAG→CGG) | hydG → | HydG |
| RA | 4,215,575 | A→G | E296E (GAA→GAG) | aceA → | isocitrate lyase |
| RA | 4,222,792 | C→T | G462G (GGC→GGT) | metH → | B12‑dependent homocysteine‑N5‑methyltetrahydrofolate transmethylase |
| RA | 4,253,662 | C→T | M128I (ATG→ATA) | plsB ← | glycerol‑3‑phosphate acyltransferase |
| RA | 4,272,173 | A→G | Q157R (CAG→CGG) | ssb → | ssDNA‑binding protein |
| RA | 4,276,490 | A→G | T145A (ACG→GCG) | yjcD → | hypothetical protein |
| RA | 4,280,469 | T→C | I62M (ATA→ATG) | yjcF ← | hypothetical protein |
| RA | 4,281,296 | C→T | A396T (GCG→ACG) | yjcG ← | putative transport protein |
| RA | 4,293,960 | +GC | intergenic (+587/+55) | gltP → / ← yjcO | glutamate‑aspartate symport protein/hypothetical protein |
| RA | 4,295,081 | T→C | D622G (GAT→GGT) | fdhF ← | selenopolypeptide subunit of formate dehydrogenase H |
| RA | 4,302,330 | A→G | V620A (GTG→GCG) | yjcS ← | hypothetical protein |
| RA | 4,311,496 | +C | coding (301/408 nt) | phnQ ← | hypothetical protein |
| RA | 4,316,203 | T→A | Q47L (CAG→CTG) | phnK ← | ATP‑binding component of phosphonate transport |
| RA | 4,326,590 | A→G | G626G (GGA→GGG) | yjdA → | putative vimentin |
| RA | 4,337,864 | A→G | L80P (CTT→CCT) | adiA ← | biodegradative arginine decarboxylase |
| RA | 4,355,838 | T→C | T120A (ACC→GCC) | cadA ← | lysine decarboxylase 1 |
| RA | 4,435,684 | +A | coding (400/501 nt) | ytfI → | hypothetical protein |
| RA | 4,439,829 | T→C | intergenic (‑76/‑130) | msrA ← / → ytfM | peptide methionine sulfoxide reductase/hypothetical protein |
| RA | 4,441,820 | A→G | P44P (CCA→CCG) | ytfN → | hypothetical protein |
| RA | 4,448,541 | +C | intergenic (+46/‑92) | ytfQ → / → ytfR | putative LACI‑type transcriptional regulator/YtfR |
| RA | 4,448,543 | +C | intergenic (+48/‑90) | ytfQ → / → ytfR | putative LACI‑type transcriptional regulator/YtfR |
| RA | 4,449,738 | +G | coding (1106/1254 nt) | ytfR → | YtfR |
| RA | 4,472,408 | A→G | intergenic (+117/‑28) | b4251 → / → b4252 | hypothetical protein/hypothetical protein |
| RA | 4,474,826 | +A | intergenic (+1/+44) | yjgL → / ← argI | hypothetical protein/ornithine carbamoyltransferase 1 |
| MC JC | 4,474,849 | 20 bp→30 bp | intergenic (+24/+2) | yjgL → / ← argI | hypothetical protein/ornithine carbamoyltransferase 1 |
| RA | 4,477,041 | Δ1 bp | intergenic (‑151/‑269) | b4256 ← / → yjgN | hypothetical protein/hypothetical protein |
| RA | 4,477,068 | +C | intergenic (‑178/‑242) | b4256 ← / → yjgN | hypothetical protein/hypothetical protein |
| RA | 4,477,281 | Δ1 bp | intergenic (‑391/‑29) | b4256 ← / → yjgN | hypothetical protein/hypothetical protein |
| RA | 4,477,321 | Δ1 bp | coding (12/1182 nt) | yjgN → | hypothetical protein |
| RA | 4,478,503 | (A)7→6 | intergenic (+12/+47) | yjgN → / ← valS | hypothetical protein/valine tRNA synthetase |
| RA | 4,478,511 | Δ1 bp | intergenic (+20/+39) | yjgN → / ← valS | hypothetical protein/valine tRNA synthetase |
| RA | 4,478,527 | Δ1 bp | intergenic (+36/+23) | yjgN → / ← valS | hypothetical protein/valine tRNA synthetase |
| RA | 4,484,334 | A→G | A183A (GCA→GCG) | yjgP → | hypothetical protein |
| RA | 4,500,500 | A→G | V167A (GTC→GCC) | yi41 ← | IS4 hypothetical protein |
| RA | 4,525,836 | T→C | N217S (AAC→AGC) | sgcQ ← | putative nucleoside triphosphatase |
| RA | 4,542,643 | Δ1 bp | intergenic (+46/‑22) | b4316 → / → fimD | Pil/FimD |
| RA | 4,544,170 | T→C | I502I (ATT→ATC) | fimD → | FimD |
| RA | 4,550,462 | A→G | intergenic (+73/‑8) | uxuA → / → uxuB | mannonate hydrolase/D‑mannonate oxidoreductase |
| RA | 4,557,351 | T→C | L73L (TTA→TTG) | yjiG ← | hypothetical protein |
| RA | 4,562,252 | A→G | Y5H (TAT→CAT) | yjiL ← | hypothetical protein |
| RA | 4,573,190 | Δ1 bp | coding (1487/1542 nt) | yjiU → | hypothetical protein |
| RA | 4,574,258 | A→G | M355V (ATG→GTG) | mcrD → | McrD |
| RA | 4,583,050 | G→A | Q446* (CAA→TAA) | hsdR ← | endonuclease R |
| RA | 4,593,254 | 2 bp→GC | coding (59‑60/807 nt) | yjjM ← | hypothetical protein |
| RA | 4,593,336 | +G | intergenic (‑23/‑208) | yjjM ← / → yjjN | hypothetical protein/putative oxidoreductase |
| RA | 4,600,078 | C→T | W135* (TGG→TAG) | yjjP ← | putative structural protein |
| RA | 4,608,595 | 2 bp→GC | intergenic (+23/‑369) | prfC → / → osmY | peptide chain release factor RF‑3/OsmY |
| RA | 4,614,238 | G→T | L133I (CTA→ATA) | yjjI ← | hypothetical protein |
| RA | 4,620,440 | T→C | M368T (ATG→ACG) | yjjJ → | hypothetical protein |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 363598 | 365526 | 1929 | 80 [77] | [0] 518 | lacZ | beta‑D‑galactosidase |
| * | * | ÷ | NC_000913 | 2067028–2068102 | 2068228–2068104 | 3–1201 | 81 [78] | [79] 82 | [b1995]–[yi213] | [b1995],[yi223],[yi213] |
| * | * | ÷ | NC_000913 | 2519007–2519026 | 2519093–2519071 | 46–87 | 81 [74] | [78] 82 | [valU]–[valX] | [valU],[valX] |
| * | * | ÷ | NC_000913 | 3943621–3943706 | 3943776–3943771 | 66–156 | 84 [79] | [76] 81 | rrlC | 23S ribosomal RNA |
| * | * | ÷ | NC_000913 | 4603728 | 4603892–4603890 | 163–165 | 80 [75] | [78] 81 | [leuV]–[leuQ] | [leuV],leuP,[leuQ] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 269765 = | NA (NA) | 427 (1.020) | 156/186 | 0.1 | 97.7% | coding (300/405 nt) | yi91a | hypothetical protein |
| ? | NC_000913 | = 370983 | 10 (0.020) | coding (536/882 nt) | mhpC | 2‑hydroxy‑6‑ketonona‑2,4‑dienedioic acid hydrolase | |||||
| * | ? | NC_000913 | = 279335 | NA (NA) | 457 (1.090) | 156/186 | 0.1 | 98.7% | coding (252/339 nt) | b4505 | hypothetical protein |
| ? | NC_000913 | 370982 = | 6 (0.010) | coding (535/882 nt) | mhpC | 2‑hydroxy‑6‑ketonona‑2,4‑dienedioic acid hydrolase | |||||
| * | ? | NC_000913 | 365527 = | 0 (0.000) | 482 (1.190) | 158/180 | 0.0 | 69.0% | coding (3/3075 nt) | lacZ | beta‑D‑galactosidase |
| ? | NC_000913 | 4589230 = | 434 (1.070) | coding (4/1656 nt) | tsr | methyl‑accepting chemotaxis protein I | |||||
| * | ? | NC_000913 | 1207013 = | 108 (0.260) | 145 (0.420) | 89/154 | 1.7 | 60.3% | coding (290/630 nt) | ycfK | hypothetical protein |
| ? | NC_000913 | 1208842 = | 102 (0.290) | coding (40/540 nt) | b1157 | putative tail fiber protein | |||||
| * | ? | NC_000913 | = 1207028 | 108 (0.260) | 107 (0.310) | 73/154 | 2.7 | 52.8% | coding (305/630 nt) | ycfK | hypothetical protein |
| ? | NC_000913 | = 1208825 | 102 (0.290) | coding (57/540 nt) | b1157 | putative tail fiber protein | |||||
| * | ? | NC_000913 | 3192559 = | 563 (1.340) | 408 (1.230) +ATGTGTTAATGAAACCTTC |
114/148 | 0.4 | 50.2% | intergenic (+18/+402) | b3051/b3052 | putative membrane protein/putative kinase |
| ? | NC_000913 | = 3192916 | 458 (1.090) | intergenic (+375/+45) | b3051/b3052 | putative membrane protein/putative kinase | |||||
| * | ? | NC_000913 | 3349258 = | 48 (0.110) | 563 (1.340) | 167/186 | 0.0 | 92.1% | coding (1403/2331 nt) | arcB | aerobic respiration sensor‑response protein |
| ? | NC_000913 | = 3349263 | NA (NA) | coding (1398/2331 nt) | arcB | aerobic respiration sensor‑response protein | |||||