mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 142 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 580,464 | 0 | G | T | 73.9% | ‑6.1 / 12.3 | 23 | V136V (GTG→GTT) | nohB | bacteriophage DNA packaging protein |
| * | NC_000913 | 1,634,017 | 0 | A | T | 63.9% | 78.0 / 86.2 | 72 | I125I (ATT→ATA) ‡ | nohA | NohA |
| * | NC_000913 | 1,634,019 | 0 | T | C | 59.0% | 101.3 / 100.7 | 78 | I125V (ATT→GTT) ‡ | nohA | NohA |
| * | NC_000913 | 580,498 | 0 | G | A | 57.4% | 62.6 / 134.2 | 101 | V148I (GTT→ATT) | nohB | bacteriophage DNA packaging protein |
| * | NC_000913 | 3,192,873 | 0 | T | C | 52.4% | 176.8 / inf | 1064 | intergenic (+332/+88) | b3051/b3052 | putative membrane protein/putative kinase |
| * | NC_000913 | 580,431 | 0 | T | A | 51.4% | 76.3 / 110.6 | 70 | I125I (ATT→ATA) | nohB | bacteriophage DNA packaging protein |
| * | NC_000913 | 3,192,891 | 0 | C | T | 50.8% | 167.6 / inf | 1059 | intergenic (+350/+70) | b3051/b3052 | putative membrane protein/putative kinase |
| * | NC_000913 | 3,192,907 | 0 | A | T | 50.5% | 62.9 / inf | 1048 | intergenic (+366/+54) | b3051/b3052 | putative membrane protein/putative kinase |
| * | NC_000913 | 580,509 | 0 | G | C | 50.0% | 201.2 / inf | 196 | L151L (CTG→CTC) | nohB | bacteriophage DNA packaging protein |
| * | NC_000913 | 1,949,344 | 0 | G | A | 49.1% | ‑0.8 / inf | 971 | Q174Q (CAG→CAA) | yecD | hypothetical protein |
| * | NC_000913 | 3,192,905 | 0 | C | A | 49.1% | 161.9 / inf | 1025 | intergenic (+364/+56) | b3051/b3052 | putative membrane protein/putative kinase |
| * | NC_000913 | 1,949,356 | 0 | T | C | 49.1% | 37.7 / inf | 1035 | S178S (AGT→AGC) | yecD | hypothetical protein |
| * | NC_000913 | 1,634,023 | 0 | A | T | 48.9% | 132.2 / 148.6 | 93 | G123G (GGT→GGA) | nohA | NohA |
| * | NC_000913 | 580,512 | 0 | A | G | 48.8% | 211.3 / inf | 201 | K152K (AAA→AAG) | nohB | bacteriophage DNA packaging protein |
| * | NC_000913 | 580,419 | 0 | C | G | 48.6% | 257.1 / 296.8 | 185 | I121M (ATC→ATG) | nohB | bacteriophage DNA packaging protein |
| * | NC_000913 | 1,949,359 | 0 | C | T | 48.3% | 2.6 / inf | 1019 | I179I (ATC→ATT) | yecD | hypothetical protein |
| * | NC_000913 | 580,783 | 0 | C | A | 48.2% | 405.0 / inf | 1116 | I69I (ATC→ATA) | ybcX | hypothetical protein |
| * | NC_000913 | 580,771 | 0 | C | T | 48.0% | 104.2 / inf | 1099 | G65G (GGC→GGT) | ybcX | hypothetical protein |
| * | NC_000913 | 580,773 | 0 | G | A | 47.6% | 119.1 / inf | 1110 | S66N (AGC→AAC) | ybcX | hypothetical protein |
| * | NC_000913 | 580,777 | 0 | C | T | 47.6% | 102.5 / inf | 1127 | D67D (GAC→GAT) | ybcX | hypothetical protein |
| Marginal new junction evidence (lowest skew 10 of 136 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1207013 = | 466 (0.810) | 188 (0.390) | 104/158 | 5.2 | 34.1% | coding (290/630 nt) | ycfK | hypothetical protein |
| ? | NC_000913 | 1208842 = | 339 (0.710) | coding (40/540 nt) | b1157 | putative tail fiber protein | |||||
| * | ? | NC_000913 | = 1207028 | 494 (0.860) | 180 (0.380) | 100/158 | 6.0 | 33.1% | coding (305/630 nt) | ycfK | hypothetical protein |
| ? | NC_000913 | = 1208825 | 319 (0.670) | coding (57/540 nt) | b1157 | putative tail fiber protein | |||||
| * | ? | NC_000913 | = 4540258 | 419 (0.730) | 46 (0.090) | 40/172 | 23.8 | 10.6% | intergenic (+57/‑425) | fimE/fimA | FimE/major type 1 subunit fimbrin |
| ? | NC_000913 | = 4540554 | 397 (0.760) | intergenic (+353/‑129) | fimE/fimA | FimE/major type 1 subunit fimbrin | |||||
| * | ? | NC_000913 | = 4008398 | 192 (0.340) | 122 (0.220) +AAGA |
33/178 | 27.2 | 39.6% | coding (481/516 nt) | b4555 | hypothetical protein |
| ? | NC_000913 | 4008399 = | 192 (0.330) | coding (482/516 nt) | b4555 | hypothetical protein | |||||
| * | ? | NC_000913 | 4540250 = | 405 (0.700) | 34 (0.070) | 30/172 | 27.8 | 8.2% | intergenic (+49/‑433) | fimE/fimA | FimE/major type 1 subunit fimbrin |
| ? | NC_000913 | 4540564 = | 398 (0.760) | intergenic (+363/‑119) | fimE/fimA | FimE/major type 1 subunit fimbrin | |||||
| * | ? | NC_000913 | = 1208841 | 419 (0.730) | 34 (0.070) | 21/160 | 30.7 | 7.3% | coding (41/540 nt) | b1157 | putative tail fiber protein |
| ? | NC_000913 | 2469917 = | 516 (1.060) | coding (166/519 nt) | yfdL | putative RNA polymerase beta | |||||
| * | ? | NC_000913 | 3224879 = | 418 (0.720) | 37 (0.070) | 10/180 | 39.8 | 7.7% | coding (1005/1434 nt) | ygjI | putative oxidoreductase |
| ? | NC_000913 | 3297267 = | 495 (0.910) | coding (290/444 nt) | yhbP | hypothetical protein | |||||
| * | ? | NC_000913 | = 3650480 | NA (NA) | 12 (0.020) | 5/170 | 43.0 | 1.7% | coding (349/1017 nt) | trs511 | IS5 transposase |
| ? | NC_000913 | = 3914556 | 758 (1.310) | coding (448/1383 nt) | atpD | membrane‑bound ATP synthase, F1 sector, beta‑subunit | |||||
| * | ? | NC_000913 | 1858757 = | 530 (0.920) | 5 (0.010) | 5/174 | 43.4 | 1.1% | coding (600/1077 nt) | b1776 | putative oxidoreductase |
| ? | NC_000913 | = 3141951 | 395 (0.750) | coding (229/1179 nt) | hybB | putative cytochrome Ni/Fe component of hydrogenase‑2 | |||||
| * | ? | NC_000913 | 1276748 = | 568 (0.980) | 6 (0.010) | 5/174 | 43.4 | 1.1% | coding (94/1797 nt) | narX | NarX |
| ? | NC_000913 | 1425561 = | 563 (1.070) | coding (80/156 nt) | b1369 | hypothetical protein | |||||