New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AE015451 = 582220248 (1.170)3 (0.080) 3/304 NT 6.6% coding (162/435 nt) PP_5099 conserved protein of unknown function
?AE015451 = 5822186 42 (1.140)coding (146/435 nt) PP_5099 conserved protein of unknown function

TCGCCTAGCCCTGTTCCTGATCAGCCTGTGCCTGGCCCTGCCAGTATTGGCTGCCGATGCCGCACGCCCCGAGCGCAAGGAGGTATTTGGCGACGTGACGGTGCACTACAGCGCATTCACCTCGAGCATGCTCACACCCAAGGTGGCCGCGGCCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/5822046‑5822202
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtggccgcggccaccTTGGGTGTGAGCATGCTCGAGGTGAATGCGCTGTAGTGCACCGTCACGTCGCCAAATACCTCCTTGCGCTCGGGGCGTGCGGCATCGGCAGCCAATACTGGCAGGGCCAGGCACAGGCTGATCAGGAACAGGGCTAGGCGACGCATGGTGCGATTCCTCCGGTGGGCGTCAGACCGCGAGCTGATGCTCTTGCAGGCCCGGACTGCTGACGCGGT  <  AE015451/5822186‑5821972
                                                                                                                                                                                                                                                                                                                                                                                    
TCGCCTAGCCCTGTTCCTGATCAGCCTGTGCCTGGCCCTGCCAGTATTGGCTGCCGATGCCGCACGCCCCGAGCGCAAGGAGGTATTTGGCGACGTGACGGTGCACTACAGCGCATTCACCTCGAGCATGCTCACACCCAAGGTGGC                                                                                                                                                                                                                                   >  2:391808/1‑147
          CTGTTCCTGATCAGCCTGTGCCTGGCCCTGCCAGTATTGGCTGCCGATGCCGCACGCCCCGAGCGCAAGGAGGTATTTGGCGACGTGACGGTGCACTACAGCGCATTCACCTCGAGCATGCTCACACCCAAGGTGGCCGCGGCCACCTTGGGTGTGAGCATGCTCGAGGTGAATGCGCTGTA                                                                                                                                                                                      <  1:744052/182‑1
                          TGTGCCTGGCCCTGCCAGTATTGGCTGCCGATGCCGCACGCCCCGAGCGCAAGGAGGTATTTGGCGACGTGACGGTGCACTACAGCGCATTCACCTCGAGCATGCTCACACCCAAGGTGG                                                                                                                                                                                                                                    >  2:573127/1‑120
                                                                               GAGGGATTTGGCGACGTGACGGTGCACTACAGCGCAGTCACCTCGAGCATGCTCACACCCAAGGTGGCCGCGGCCACCTTGGGTGTGAGCATGCGCGAGGTGAAT                                                                                                                                                                                              <  2:41255/105‑1
                                                                                             CGTGACGGTGCACTACAGCGCATTCACCTCGAGCATGCTCACACCCAAGGTGGCCGCGGCCACCTTGGGTGTGAGCATGCTCGAGGTGAATGCGCTGTAGTGCACCGTCACGTCGCCAAATACCTCCTTGCGCTCGGGGCGTGCGGCATCGGCAGCCAATACTGGCAGGGCCAGGCACAGGCTGATCAGGAACAGGGCTAGGCGACGCATGGTGCGA                                                                >  1:658742/1‑217
                                                                                                                                              GTGGCCGCGGCCACCTTGGGTGTGAGCATGCTCGAGGTGAATGCGCTGTAGTGCACCGTCACGTCGCCAAATACCTCCTTGCGCTCGGGGCGTGCGGCATCGGCAGCCAATACTGGCAGGGCCAGGCACAGGCTGATCAGGAACAGGGCTAGGCGACGCATGGTGCTATTCCT                                                           >  1:361778/1‑173
                                                                                                                                                GGCCGCGGCCACCTTGGGTGTGAGCATGCTCGAGGTGAATGCGCTGTAGTGCACCGTCACGTCGCCAAATACCTCCTTGCGCTCGGGGCGTGCGGCATCGGCAGCCAATACTGGCAGGGCCAGGCACAGGCTGATCAGGAACAGGGCTAGGCGACGCATGGTGCGATTCCTCCGGTGGGC                                                  <  2:186398/180‑1
                                                                                                                                                  CCGCGGCCACCTTGGGTGTGAGCATGCTCGAGGTGAATGCGCTGTAGTGCACCGTCACGTCGCCAAATACCTCCTTGCGCTCGGGGCGTGCGGCATCGGCAGCCAATACTGGCAGGGCCAGGCACAGGCTGATCAGGAACAGGGCTAGGCGACGCATGGTGCGGTTCCTCCGGGGGGCGTCAGACCGCGAGCTGATGCTCTTGCAGGCCCGGACTGCTGACGCGGT  >  1:159449/1‑226
                                                                                                                                                        CCACCTTGGGTGTGAGCATGCTCGAGGTGAATGCGCTGTAGTGCACCGTCACGTCGCCAAATACCTCCTTGCGCTCGGGGCGTGCGGCATCGGCAGCCAATACTGGCAGGGCCAGGCACAGGCTGATCAGGAACAGGGCTAGGCGACGCATGGTGCGATTCCTCCGGTGGG                                                   >  1:501993/1‑171
                                                                                                                                                        CCACCTTGGGTGTGAGCATGCTCGAGGTGAATGCGCTGTAGTGCACCGTCACGTCGCCAAATACCTCCTTGCGCTCGGGGCGTGCGGCATCGGCAGCCAATACTGGCAGGGCCAGGCACA                                                                                                      >  1:573128/1‑120
                                                                                                                                                                                                                                                                                                                                                                                    
TCGCCTAGCCCTGTTCCTGATCAGCCTGTGCCTGGCCCTGCCAGTATTGGCTGCCGATGCCGCACGCCCCGAGCGCAAGGAGGTATTTGGCGACGTGACGGTGCACTACAGCGCATTCACCTCGAGCATGCTCACACCCAAGGTGGCCGCGGCCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/5822046‑5822202
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtggccgcggccaccTTGGGTGTGAGCATGCTCGAGGTGAATGCGCTGTAGTGCACCGTCACGTCGCCAAATACCTCCTTGCGCTCGGGGCGTGCGGCATCGGCAGCCAATACTGGCAGGGCCAGGCACAGGCTGATCAGGAACAGGGCTAGGCGACGCATGGTGCGATTCCTCCGGTGGGCGTCAGACCGCGAGCTGATGCTCTTGCAGGCCCGGACTGCTGACGCGGT  <  AE015451/5822186‑5821972

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.