New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	4418726 =	42 (1.030)	5 (0.130)	5/312	NT	11.4%	coding (242/351 nt)	PP_3908	conserved protein of unknown function
	?	AE015451	4418770 =	39 (1.030)					coding (286/351 nt)	PP_3908	conserved protein of unknown function

GCGCGAGAAGTTCGAAAAGGGTGAAGTCAGCAACTTCGATGACGTGGAGGAGCTGGTGAAAAAGGTTGTAGCGGTCTGCGAAGAGCTCGGCGCTGAAGAGTGCTTCAGCTGCGACTTCGACTAAGGAAGGTCGATCGTCATAGCGGTGGCACTATCTCGTCGCCTGGGTAACGCTTAAGCTCGGCCAATGTCGCGTCGTTGAACTGACGCGCCAGTTTTGGCGAGATGTAAAAAGCTGGCGCGTCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/4418972‑4418726 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggcgcgtcagTTCAACGACGCGACATTGGCCGAGCTTAAGCGTTACCCAGGCGACGAGATAGTGCCACCGCTATGACGATCGACCTTCCTTAGTCGAAGTCGCAGCTGAAGCACTCTTCAGCGCCGAGCTCTTCGCAGACCGCTACAACCTTTTTCACCAGCTCCTCCACGTCATCGAAGTTGCTGACTTCACCCTTTTCGAACTTCTCGCGCGCCAGCTCCTCAGCCTCGCTGATGTCGCC  >  AE015451/4418770‑4419001                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 GCGCGAGAAGTTCGAAAAGGGTGAAGTCAGCAACTTCGATGACGTGGAGGAGCTGGTGAAAAAGGTTGTAGCGGTCTGCGAAGAGCTCGGCGCTGAAGAGTGCTTCAGCTGCGACTTCGACTAAGGAAGGTCGATCGTCATAGCGGTGGCACTATCTCGTCGCCTGGGTAACGCTTAAGCTCGGCCAATGTCGCGTCGTTGAACTGACGCGCCAGTTTTGGCGAGATGTAAAAAGC                                                                                                                                                                                                                                                     >  1:242185/1‑236                                               GAGGAGCTGGTGAAAAAGGTTGTAGCGGTCTGCGAAGAGCTCGGCGCTGAAGAGTGCTTCAGCTGCGACTTCGACTAAGGAAGGTCGATCGTCATAGCGGTGGCACTATCTCGTCGCCTGGGTAACGCTTAAGCTCGGCCAATGTCGCGTCGTTGAACTGACGCGCCAGTTTTGGCGAGATGTAAAAAGCTGGCGCGTCAGTTCAACGACGCGACATT                                                                                                                                                                                                                         <  2:264630/218‑1                                                                 GTTGTAGCGGTCTGAGAAGAGCTCGGCGCTGAAGAGTGCTTCAGCTGCGACTTCGACTAAGGAAGGTCGATCGTCATAGCGGTGGCACTATCTCGTCGCCTGGGTAACGCTTAAGCTCGGCCAATGTCGCGTCGTTGAACTGACGCGCCAGTTTTGGCGAGATGTAAAAAGCTGGCGCGTCAGTTCAACGACGCGACATTG                                                                                                                                                                                                                        <  1:623430/201‑1                                                                                                                            AGGAAGGTCGATCGTCATAGCGGTGGCACTATCTCGTCGCCTGGGTAACGCTTAAGCTCGGCCAATGTCGCGTCGTTGAACTGACGCGCCAGTTTTGGCGAGATGTAAAAAGCTGGCGCGTCAGTTCAACGACGCGACATTGGCCGAGCTTAAGCGTTACCCAGGCGACGAGATAGTGCCACCGCTATGACGATCGACCTTCCTT                                                                                                                                                         <  1:746680/205‑1                                                                                                                                                                                        GCCAATGTCGCGTCGTTGAACGGACGCGCCAGTTTTGGCGAGATGTAAAAAGCTGGCGCGTCAGTTCAACGACGCGACATTGGCCGAGCTTAAGCGTT                                                                                                                                                                                                        <  1:622239/98‑1                                                                                                                                                                                                 gcttaaacggcCTGACGCGCCAGTTTTGGCGAGATGTAAAAAGCTGGCGCGTCAGTTCAACGACGCGACATTGGCCGAGCTTAAGCGTTACCCAGGCGACGAGATAGTGCCACCGCTATGACGATCGACCTTCCTTAGTCGAAGTCGCAGCTGAAGCACTCTTCAGCGCCGAGCTCTTCGCAGACCGCTACAACCTTTTTCACCAGCTCCTCCACGTCATCGAAGTTGCTGACTT                                                      <  1:566890/224‑1                                                                                                                                                                                                                                               GCGCGTCAGTTCAACGACGCGACATTGGCCGAGCTTAAGCGTTACCCAGGCGACGAGATAGTGCCACCGCTATGACGATCGACCTTCCTTAGTCGAAGTCGCAGCTGAAGCACTCTTCAGCGCCG                                                                                                                      <  2:746679/125‑1                                                                                                                                                                                                                                                  CGTCAGTTCAACGACGCGACATTGGCCGAGCTTAAGCGTTACCCAGGCGACGAGATAGTGCCACCGCTATGACGATCGACCTTCCTTAGTCGAAGTCGCAGCTGAAGCACTCTTCAGCGCCGAGCTCTTCGCAGACCGCTACAACCTTTTTCACCAGCTCCTCCACGTCATCGAAGTTGCTGACTTCACCCTTTTCGAACTTCTCGCGCGCCAGCTCCTCAGCCTCGCTGATGTCG    >  1:521076/1‑236                                                                                                                                                                                                                                                      AGTTCAACGACGCGACATTGGCCGAGCTTAAGCGTTACCCAGGCGACGAGATAGTGCCACCGCTATGACGATCGACCTTCCTTAGTCGAAGTCGCAGCTGAAGCACTCTTCAGCGCCGAGCTCTTCGCAGACCGCTACAACCTTTTTCACCAGCTCCTCCACGTCATCGAAGTTGCTGACTTCACCCTTTTCGAACTTCTCGCGCGCCAGCTCCTCAGCCTCGCTGATGTCGCC  <  2:316447/234‑1                                                                                                                                                                                                                                                       GTTCAACGACGCGACATTGGCCGAGCTTAAGCGTTACCCAGGCGACGAGATAGTGCCACCGCTATGACGATCGACCTTCCTTAGTCGAAGTCGCAGCTGAAGCACTCTTCAGCGCCGAGCTCTTCGCAGACCGCTACAACCTTTTTCACCATCTCCTCCACGTCAT                                                                     >  2:237288/1‑166                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 GCGCGAGAAGTTCGAAAAGGGTGAAGTCAGCAACTTCGATGACGTGGAGGAGCTGGTGAAAAAGGTTGTAGCGGTCTGCGAAGAGCTCGGCGCTGAAGAGTGCTTCAGCTGCGACTTCGACTAAGGAAGGTCGATCGTCATAGCGGTGGCACTATCTCGTCGCCTGGGTAACGCTTAAGCTCGGCCAATGTCGCGTCGTTGAACTGACGCGCCAGTTTTGGCGAGATGTAAAAAGCTGGCGCGTCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/4418972‑4418726 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggcgcgtcagTTCAACGACGCGACATTGGCCGAGCTTAAGCGTTACCCAGGCGACGAGATAGTGCCACCGCTATGACGATCGACCTTCCTTAGTCGAAGTCGCAGCTGAAGCACTCTTCAGCGCCGAGCTCTTCGCAGACCGCTACAACCTTTTTCACCAGCTCCTCCACGTCATCGAAGTTGCTGACTTCACCCTTTTCGAACTTCTCGCGCGCCAGCTCCTCAGCCTCGCTGATGTCGCC  >  AE015451/4418770‑4419001

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.