New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	765677 =	40 (0.980)	4 (0.100)	4/320	NT	9.7%	coding (272/936 nt)	PP_0658	Homocysteine S‑methyltransferase family protein
	?	AE015451	765702 =	36 (0.920)					coding (297/936 nt)	PP_0658	Homocysteine S‑methyltransferase family protein

GGCTATGAATGGCTCGCACTTCGGCCACGGAACTCTGGGTTTCGGCCAGCCACAGGTCAACATGCGGGGCCAGGCCCTGGAGCAACGGGGTCAGCACCTCTGCCACACGCTCGGGCTGGAACAGGTCGGGCCGGTAGGACCCGAACAGCGGCGGCAGCGAACCTGCCACCCTGACCGGGTGCGCGCCGCTATCTGCCGCGTGCCGCGCAAGCTGGCCTGCGATATGGGCCAGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/765910‑765677 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccagctTGCGCGGCACGCGGCAGATAGCGGCGCGCACCCGGTCAGGGTGGCAGGTTCGCTGCCGCCGCTGTTCGGGTCCTACCGGCCCGACCTGTTCCAGCCCGAGCGTGTGGCAGAGGTGCTGACCCCGTTGCTCCAGGGCCTGGCCCCGCATGTTGACCTGTGGCTGGCCGAAACCCAGAGTTCCGTGGCCGAAGTGCGAGCCATTCATAGCCATTTGCCGGCAGACGGCA  >  AE015451/765702‑765928                                                                                                                                                                                                                                                                                                                                                                                                                                                                               GGCTATGAATGGCTCGCACTTCGGCCACGGAACTCTGGGTTTCGGCCAGCCACAGGTCAACATGCGGGGCCAGGCCCTGGAGCAACGGGGTCAGCACCTCTGCCACACGCTCGGGCTGGAACAGGTCGGGCCGGTAGGACCCGAACAGCGGCGGCAGCGAACCTGCCACCCTGACCGGGTGCGCGCCGCTATCTGCCGCGTGCCGCGCAAGCTGGCCTGCGATATGGGCCAGC                                                                                                                                                                                                                                      <  2:300150/233‑1                                                                                 AGCAACGGGGTCAGCACCTCTGCCACACGCTCGGGCTGGAACAGGTCGGGCCGGTAGGACCCGAACAGCGGCGGCAGCGAACCTGCCACCCTGACCGGGTGCGCGCCGCTATCTGCCGCGTGCCGCGCAAGCTGGCCTGCGATATGGGCCAGCTTGCGCGGCACGCGGCAGATAGCGGCGCGCAC                                                                                                                                                                                                      >  2:315546/1‑185                                                                                                                 GGGCTGGAACAGGTCGGGCCGGTAGGACCCGAACAGCGGCGGCAGCGAACCTGCCACCCTGACCGGGTGCGCGCCGCTATCTGCCGCGTGCCGCGCAAGCTGGCCTGCGATATGGGCCAGCTTGCGCGGCACGCGGCAGATAGCGGCGCGCACCCGGTCAGGGTGGCAGGTTCGC                                                                                                                                                                                <  1:315547/175‑1                                                                                                                           AGGTCGGGCCGGTAGGACCCGAACAGCGGCGGCAGCGAACCTGCCACCCTGACCGGGTGCGCGCCGCTATCTGCCGCGTGCCGCGCAAGCTGGCCTGCGATATGGGCCAGCTTGCGCGGCACGCGGCAGATAGCGGCGCG                                                                                                                                                                                                         <  2:101916/140‑1                                                                                                                                                                              ACCGGGTGCGCGCGACTATCTGCCGCGTGCCGCGCAAGCTGGCCTGCGCTATGGGCCAGCTTGCGCGGCACGCGGCAGA                                                                                                                                                                                                                   <  2:637232/79‑1                                                                                                                                                                                                                                   GGCCAGCTTGCGCGGCACGCGGCAGATAGCGGCGCGCACCCGGTCAGGGTGGCAGGTTCGCTGCCGCCGCTGTTCGGGTCCTACCGGCCCGACCTGTTCCAGCCCGAGCGTGTGGCAGAGGTGCTGACCCCGTTGCTCCAGGGCCTGGCCCCGCATGTTGACCTGTGGCTGGCCGAAACCCAGAGTTCCGTGGCCGAAGTGCGAGCCATTCATAGCCATTTGCCGGCAGACGG    <  2:708524/233‑1                                                                                                                                                                                                                                    GCCAGCTTGCGCGGCACGCGGCAGATAGCGGCGCGCACCCGGTCAGGGTGGCAGGTTCGCTGCCGCCGCTGTTCGGGTCCTACCGGCCCGACCTGTTCCAGCCCGAGCGTGTGGCAGAGGTGCTGACCCCGTTGCTCCAGGGCCTGGCCCCGCATGTTGACCTGTGGCTGGCCGAAACCCAGAGTTCCGTGGCCGAAGTGCGAGCCATTCATAGCCATTTGCCGGCAGACGGCA  <  1:78015/234‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                                               GGCTATGAATGGCTCGCACTTCGGCCACGGAACTCTGGGTTTCGGCCAGCCACAGGTCAACATGCGGGGCCAGGCCCTGGAGCAACGGGGTCAGCACCTCTGCCACACGCTCGGGCTGGAACAGGTCGGGCCGGTAGGACCCGAACAGCGGCGGCAGCGAACCTGCCACCCTGACCGGGTGCGCGCCGCTATCTGCCGCGTGCCGCGCAAGCTGGCCTGCGATATGGGCCAGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/765910‑765677 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccagctTGCGCGGCACGCGGCAGATAGCGGCGCGCACCCGGTCAGGGTGGCAGGTTCGCTGCCGCCGCTGTTCGGGTCCTACCGGCCCGACCTGTTCCAGCCCGAGCGTGTGGCAGAGGTGCTGACCCCGTTGCTCCAGGGCCTGGCCCCGCATGTTGACCTGTGGCTGGCCGAAACCCAGAGTTCCGTGGCCGAAGTGCGAGCCATTCATAGCCATTTGCCGGCAGACGGCA  >  AE015451/765702‑765928

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.