New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2791445 =	41 (1.220)	4 (0.120)	4/480	NT	10.7%	coding (173/1449 nt)	gabD	succinate‑semialdehyde dehydrogenase I, NADP‑dependent
	?	NC_000913	2791920 =	27 (0.830)					coding (648/1449 nt)	gabD	succinate‑semialdehyde dehydrogenase I, NADP‑dependent

TTATGGCGACACCATTCCTGGTCATCAGGCCGATAAACGCCTGATTGTTATCAAGCAGCCGATTGGCGTCACCGCGGCTATCACGCCGTGGAACTTCCCGGCGGCGATGATTACCCGCAAAGCCGGTCCGGCGCTGGCAGCAGGCTGCACCATGGTGCTGAAGCCCGCCAGTCAGACGCCGTTCTCTGCGCTGGCGCTGGCGGAGCTGGCGATCCGCGCGGGCGTTCCGGCTGGGGTATTTAACGTGGTCACCGGTTCGGCGGGCGCGGTCGGTAACGAACTGACCAGTAACCCGCTGGTGCGCAAACTGTCGTTTACCGGTTCGACCGAAATTGGCCGCCAGTTAATGGAACAGTGCGCGAAAGACATCAAGAAAGTGTCGCTGGAGCTGGGCGGTAACGCGCCGTTTATCGTCTTTGACGATGCCGACCTCGACAAAGCCGTGGAAGGCGCGCTGGCCTCGAAATTCCGCAACGCCGGGCAAACCTGCGTCTGCGCCAACCGCCTGTATGTGCAGGACGGCGTGTATGACCGTTTTGCCGAA  >  NC_000913/2791650‑2792193                                                                                                                                                                                                                                                                               |                                                                                                                                                                                                                                                                                  ttATGGCGACACCATTCCTGGTCATCAGGCCGATAAACGCCTGATTGTTATCAAGCAGCCGATTGGCGTCACCGCGGCTATCACGCCGTGGAACTTCCCGGCGGCGATGATTACCCGCAAAGCCGGTCCGGCGCTGGCAGCAGGCTGCACCATGGTGCTGAAGCCCGCCAGTCAGACGCCGTTCTCTGCGCTGGCGCTGGCGGAGCTGGCGATCCGCGCGGGCGTTCCGGCTGGGGTATTTAACGTGGTCACCGGTTCGGCGGGCGCGGTCGGTAACGAACTGACCAGt                                                                                                                                                                                                                                                                 <  2:218425/289‑1 (MQ=255)               ttCCTGGTCATCAGGCCGATAAACGCCTGATTGTTATCAAGCAGCCGATTGGCGTCACCGCGGCTATCACGCCGTGGAACTTCCCGGCGGCGATGATTACCCGCAAAGCCGGTCCGGCGCTGGCAGCAGGCTGCACCATGGTGCTGAAGCCCGCCAGTCAGACGCCGTTCTCTGCGCTGGCGCTGGCGGAGCTGGCGATCCGCGCGGGCGTTCCGGCTGGGGTATTTAACGTGGTCACCGGTTCGGCGGGCGCGGTCGGTAACGAACt                                                                                                                                                                                                                                                                        <  1:126579/268‑1 (MQ=255)               ttCCTGGTCATCAGGCCGATAAACGCCTGATTGTTATCAAGCAGCCGATTGGCGTCACCGCGGCTATCACGCCGTGGAACTTCCCGGCGGCGATGATTACCCGCAAAGCCGGTCCGGCGCTGGCAGCAGGCTGCACCATGGTGCTGAAGCCCGCCAGTCAGACGCCGTTCTCTGCGCTGGCGCTGGCGGAGCTGGCGATCCGCGCGGGCGTTCCGGCTGGGGTATTTAACGTGGTCACCGGTTCGGCGGGCGCGGTCGGTAACGAACt                                                                                                                                                                                                                                                                        >  2:126579/1‑268 (MQ=255)                     gTCATCAGGCCGATAAACGCCTGATTGTTATCAAGCAGCCGATTGGCGTCACCGCGGCTATCACGCCGTGGAACTTCCCGGCGGCGATGATTACCCGCAAAGCCGGTCCGGCGCTGGCAGCAGGCTGCACCATGGTGCTGAAGCCCGCCAGTCAGACGCCGTTCTCTGCGCTGGCGCTGGCGGAGCTGGCGATCCGCGCGGGCGTTCCGGCTGGGGTATTTAACGTGGTCACCGGTTCGGCGGGCGCGGTCGGTAACGAACTGACCAGTAACCCGCTGGTGCGCaa                                                                                                                                                                                                                                                >  1:257200/1‑286 (MQ=255)                             gCCGATAAACGCCTGATTGTTATCAAGCAGCCGATTGGCGTCACCGCGGCTATCACGCCGTGGAACTTCCCGGCGGCGATGATTACCCGCAAAGCCGGTCCGGCGCTGGCAGCAGGCTGCACCATGGTGCTGAAGCCCGCCAGTCAGACGCCGTTCTCTGCGCTGGCGCTGGCGGAGCTGGCGATCCGCGCGGGCGTTCCGGCTGGGGTATTTAACGTGGTCACCGGTTCGGCGGGCGCGGTCGGTAACGAACTGACCAGTAACCCGCTGGTGCGCAAACTGTCGttt                                                                                                                                                                                                                                      >  1:252885/1‑288 (MQ=255)                               cGATAAACGCCTGATTGTTATCAAGCAGCCGATTGGCGTCACCGCGGCTATCACGCCGTGGAACTTCCCGGCGGCGATGATTACCCGCAAAGCCGGTCCGGCGCTGGCAGCAGGCTGCACCATGGTGCTGAAGCCCGCCAGTCAGACGCCGTTCTCTGCGCTGGCGCTGGCGGCGCTGGCGATCCGCGCGGGCGTTCCGGCTGGGGTATTTTACGTGGTCACCGGTTCGGCGGGCGCGGTCGGTAACGAACTCACCATATACCACCCGGGGCGCAAACCGtactttccc                                                                                                                                                                                                                                   >  2:210680/1‑281 (MQ=255)                                   aaaGGCCTGATTGTTATCAGGCGGCCGATTGGCGTCACCGCGGCTATCACGCCGTGGAACTTCCCGGCGGCGATGATTACCCGCAAAGCCGGTCCGGCGCTGGCAGCAGGCTGCACCATGGTGCTGAAGCCCGCCAGTCAGACGCCGTTCTCTGCGCTGGCGCTGGCGGAGCTGGCGATCCGCGCGGGCGTTCCGGCTGGGGTATTTAACGTGGTCACCGGTTCGGCGGGCGCGGTCGGTAACGAACTGACCAGTAACCCGCTGGTGCGCAAACTGTCGTTTACCGGtt                                                                                                                                                                                                                               <  2:257200/289‑1 (MQ=255)                                                 tATCAAGCAGCCGATTGGCGTCACCGCGGCTATCACGCCGTGGAACTTCCCGGCGGCGATGATTACCCGCAAAGCCGGTCCGGCGCTGGCAGCAGGCTGCACCATGGTGCTGAAGCCCGCCAGTCAGACGCCGTTCTCTGCGCTGGCGCTGGCGGAGCTGGCGATCCGCGCGGGCGTTCCGGCTGGGGTATTTAACGTGGTCACCGGTTCGGCGGGCGCGGTCGGTAACGAACTGACCAGTAACCCGCTGGTGCGCAAACTGTCGTTTACCGGTTCGACCGAAATTGgc                                                                                                                                                                                                                 <  2:246304/289‑1 (MQ=255)                                                         agcCGATTGGCGTCACCGCGGCTATCACGCCGTGGAACTTCCCGGCGGCGATGATTACCCGCAAAGCCGGTCCGGCGCTGGCAGCAGGCTGCACCATGGTGCTGAAGCCCGCCAGTCAGACGCCGTTCTCTGCGCTGGCGCTGGCGGAGCTGGCGATCCGCGCGGGCGTTCCGGCTGGGGTATTTAACGTGGTCACCGGTTCGGCGGGCGCGGTCGGTAACGAACTGACCAGTAACCCGCTGGTGCGCAAACTGTCGTTTACCGGTTCGACCGAAATTGGCCGCCAGt                                                                                                                                                                                                          <  2:230587/288‑1 (MQ=255)                                                          gcCGATTGGCGTCACCGCGGCTATCACGCCGTGGAACTTCCCGGCGGCGATGATTACCCGCAAAGCCGGTCCGGCGCTGGCAGCAGGCTGCACCATGGTGCTGAAGCCCGCCAGTCAGACGCCGTTCTCTGCGCTGGCGCTGGCGGAGCTGGCGATCCGCGCGGGCGTTCCGGCTGGGGTATTTAACGTGGTCACCGGTTCGGCGGGCGCGGTCGGTAACGAACTGACCAGGAACCCGCTGGTGCGGCAACTGTCGTTTACCGGTTCGACCGGAATTGGCCGCCACttc                                                                                                                                                                                                        >  2:47572/1‑288 (MQ=255)                                                                                           taagtacacggcggTGATGATTACCCGCAAAGCCGGTCGGGAGCTGGCAGCAGTCTGCACCATGTTGCTGAAGGCAGCCAGTCAAACGCCGTTCTCTGCGCTGGCGCTGGAGGAGCTGGCGATCCGCGCGGGCGTTCCGGCTGGGGTATTTAACGTGGTCACCGGTTCGGCGGGCGCGGTCGGTAACGAACTGACCAGTAACCCGCTGGTGCGCAAACTGTCGTTTACCGGTTCGACCGAAATTGGCCGCCAGTTAATGGAACAGTGCGCGAAAGACATCAAGAAAgt                                                                                                                                                                        <  1:210680/280‑1 (MQ=255)                                                                                                   cggcggCGATGATTACCCGCAAAGCCGGTCCGGCGCTGGCAGCAGGCTGCACCATGGTGCTGAAGCCCGCCAGTCAGACGCCGTTCTCTGCGCTGGCGCTGGCGGAGCTGGCGATCCGCGCGGGCGTTCCGGCTGGGGTATTTAACGTGGTCACCGGTTCGGCGGGCGCGGTCGGTAACGAACTGACCAGTAACCCGCTGGTGCGCAAACTGTCGTTTACCGGTTCGACCGAAATTGGCCGCCAGTTAATGGAACAGTGCGCGAAAGACATCAAGAAAGTGTCGCTGGa                                                                                                                                                               >  1:35834/1‑289 (MQ=255)                                                                                                    aggaggcggcgtagctgatttcgcctttcgcttcggccagtggtttaccctgttcgagggtcatcaggcgcgctaaatcgtcctgatgctccatcatcaaattgaaccagttgcgcagaatggtggcgcgttctttggcggtgagcgcgcgccaggcgggcagggcgcggtCGGTAACGAACTGACCAGTAACCCGCTGGTGCGCAAACTGTCGTTTACCGGTTCGACCGAAATTGGCCGCCAGTTAATGGCACCGTGCGCGAAAGACATCAAGCAAGTGTCGcgggc                                                                                                                                                               >  2:244867‑M2/172‑287 (MQ=255)                                                                                                       ggcgATGATTACCCGCAAAGCCGGTCCGGCGCTGGCAGCAGGCTGCACCATGGTGCTGAAGCCCGCCAGTCAGACGCCGTTCTCTGCGCTGGCGCTGGCGGAGCTGGCGATCCGCGCGGGCGTTCCGGCTGGGGTATTTAACGTGGTCACCGGTTCGGCGGGCGCGGTCGGTAACGAACTGACCAGTAACCCGCTGGTGCGCAAACTGTCGTTTACCGGTTCGACCGAAATTGGCCGCCAGTTAATGGAACAGTGCGCGAAAGACATCAAGAAAGTGTCGCTGGAGCt                                                                                                                                                            <  2:252885/288‑1 (MQ=255)                                                                                                                  cccGCAAAGCCGGTCCGGGGCTGGCAGCAGGCTGCACCAGGGGGCTGAAGCCCGCCAGTCAGACGCCGTTCTCTGCGCTGGCGCTGGCGGAGCTGGCGATCCGCGCGGGCGTTCCGGCTGGGGTATTTAACGTGGTCACCGGTTCGGCGGGCGCGGTCGGTAACGAACTGACCAGTAACCCGCTGGTGCGCAAACTGTCGTTTACCGGTTCGACCGAAATTGGCCGCCAGTTAATGGAACAGTGCGCGAAAGACATCAAGAAAGTGTCGCTGGAGCTGGGCGGTAAcg                                                                                                                                                 <  2:35834/288‑1 (MQ=255)                                                                                                                   tgatgtcgcctttcgcgtcggtcagtgtgttaccctgttcgagggtctacaggcgcgctacatcgtcctgatgctccatcatcaaattgaaccagttgcgcagaatgggggcgcgttctttggcggtgggcgcgcgccaggcgggcagggcgcggtCGGTAACGAACTGACCAGTAACCCGCTGGTGCGCAAACTGTCGTTTACCGGTTCGACCGAAATTGGCCGCCAGTTAATGGAACAGTGCGCGAAAGACATCAAGAAAGTGTCGCTGGAGCTGGGCGGTAAcgcg                                                                                                                                               <  1:244867‑M2/133‑1 (MQ=255)                                                                                                                       aaaGCCGGTCCGGCGCTGGCAGCAGGCTGCACCATGGTGCTGAAGCCCGCCAGTCAGACGCCGTTCTCTGCGCTGGCGCTGGCGGAGCTGGCGATCCGCGCGGGCGTTCCGGCTGGGGTATTTAACGTGGTCACCGGTTCGGCGGGCGCGGTCGGTAACGAACTGACCCGTAACCCGCTGGTGCGCAAACTGTCGTTTACCGGTTTGACCGAAATTGGCCGCCAGTTAATGGAACAGTGCGCGAAAGTCATCAAGAAAGTTTCGCTTGAGCTGGGCGGTAACGCGCCGt                                                                                                                                           >  1:203879/1‑289 (MQ=255)                                                                                                                                              agGCTGCACCATGGTGCTGAAGCCCGCCAGTCAGACGCCGTTCTCTGCGCTGGCGCTGGCGGAGCTGGCGATCCGCGCGGGCGTTCCGGCTGGGGTATTTAACGTGGTCACCGGTTCGGCGGGCGCGGTCGGTAACGAACTGACCAGTAACCCGCCGGTGCGCAAACTGTCGTTTACCGGTTCGACCGAAATTGGCCGCCAGTTAATGGAACAGTGCGCGAAAGACATCAAGAAAGTGTCGCTGGAGCCGGGCGGTAACGCGCCGTTTATCGTCTTTGACGATTCCGa                                                                                                                     >  1:27988/1‑288 (MQ=255)                                                                                                                                                     cccAGGGTGCTGAAGCCCGCCAGTCAGACGCCGTGCTCGGCGCTGGCGCTGGGGGAGCTGGCGATCCGCGCGGGCGTTCCGGCTGGGGTATTTAACGTGGTCACCGGTTCGGCGGGCGCGGTCGGTAACGAACTGACCAGTAACCCGCTGGTGCGCAAACTGTCGTTTACCGGTTCGACCGAAATTGGCCGCCAGTTAATGGAACAGTGCGCGAAAGACATCAAGAAAGTGTCGCTGGAGCTGGGCGGTAACGCGCCGTTTATCGTCTTTGACGATGCCGACCTCGACa                                                                                                             <  2:203879/288‑1 (MQ=255)                                                                                                                                                       cATGGTGCGGGAGCCCGCCAGTCAGACGCCGTGCTCTGCGCTGGCGCTGGCGGAGCTGGCGATCCGCGCGGGCGTTCCGGCTGGGGTATTTAACGTGGTCACCGGTTCGGCGGGCGCGGTCGGTAACGAACTGACCAGTAACCCGCTGGTGCGCAAACTGTCGTTTACCGGTTCGACCGAAATTGGCCGCCAGTTAATGGAACAGTGCGCGAAAGACATCAAGAAAGTGTCGCTGGAGCTGGGCGGTAACGCGCCGTTTATCGTCTTTGACGATGCCGACCTCGAGaaa                                                                                                           <  2:314291/289‑1 (MQ=255)                                                                                                                                                         tGGTGCTGAAGCCCGCCAGTCAGACGCCGTTCTCTGCGCTGGCGCTGGCGGAGCTGGCGATCCGCGCGGGCGTTCCGGCTGGGGTATTTAACGTGGTCACCGGTTCGGCGGGCGCGGTCGGTAACGaa                                                                                                                                                                                                                                                                          >  2:258722/1‑128 (MQ=255)                                                                                                                                                         tGGTGCTGAAGCCCGCCAGTCAGACGCCGTTCTCTGCGCTGGCGCTGGCGGAGCTGGCGATCCGCGCGGGCGTTCCGGCTGGGGTATTTAACGTGGTCACCGGTTCGGCGGGCGCGGTCGGTAACGaa                                                                                                                                                                                                                                                                          <  1:258722/128‑1 (MQ=255)                                                                                                                                                         tGGTGCTGAAGCCCGCCAGTCAGACGCCGTTCTCTGCGCTGGCGCTGGCGGAGCTGGCGATCCGCGCGGGCGTTCCGGCTGGGGTATTTAACGTGGTCACCGGTTCGGCGGGCGCGGTCGGTAACGAACTGACCAGTAACCCGCTGGTGCGCAAACTGTCGTTTACCGGTTCGACCGAAATCGGCCGCCAGTTAATGGAACAGTGCGCGAAAGACATCAAGAAAGTGTCGCTGGAGCTGGGCGGTAACGCGCCGTGTATCGTCTTTGACGATGCCGACCGCGACAAAg                                                                                                          >  1:131412/1‑288 (MQ=255)                                                                                                                                                                                 tcgtcctgatgctccatcatcaaattgaaccagttgcgcagaatggtggcgcgttctttggcggtgagcgcgcgccaggcgggcagggcgcggtCGGTAACGAACTGACCAGTAACCCGCTGGTGCGCAAACTGTCGTTTACCGGTTCGACCGAAATTGGCCGCCAGTTAATGGAACAGTGCGCGAAAGACATCAAGAAAGTGTCGCTGGAGCTGGGCGGTAACgcgc                                                                                                                                              >  2:17911‑M2/95‑228 (MQ=255)                                                                                                                                                                                 tcgtcctgatgctccatcatcaaattgaaccagttgcgcagaatggtggcgcgttctttggcggtgagcgcgcgccaggcgggcagggcgcggtCGGTAACGAACTGACCAGTAACCCGCTGGTGCGCAAACTGTCGTTTACCGGTTCGACCGAAATTGGCCGCCAGTTAATGGAACAGTGCGCGAAAGACATCAAGAAAGTGTCGCTGGAGCTGGGCGGTAACgcgc                                                                                                                                              <  1:17911‑M2/134‑1 (MQ=255)                                                                                                                                                                                     gTTCTCTGCGCTGGCGCTGGCGGAGCTGGCGATCCGCGCGGGCGTTCCGGCTGGGGTATTTAACGTGGTCACCGGTTCGGCGGGCGCGGTCGGTAACGAACTGACCAGTAACCCGCTGGTGCGCAAACTGTCGTTTACCGGTTCGACCGAAATTGgccg                                                                                                                                                                                                               <  2:221415/159‑1 (MQ=255)                                                                                                                                                                                     gTTCTCTGCGCTGGCGCTGGCGGAGCTGGCGATCCGCGCGGGCGTTCCGGCTGGGGTATTTAACGTGGTCACCGGTTCGGCGGGCGCGGTCGGTAACGAACTGACCAGTAACCCGCTGGTGCGCAAACTGTCGTTTACCGGTTCGACCGAAATTGgccg                                                                                                                                                                                                               >  1:221415/1‑159 (MQ=255)                                                                                                                                                                                                                  cGATCCGCGCGGGCGTTCCGGCTGGGGTATTTAACGTGGTCACCGGTTCGGCGGGCGCGGTCGGTAACGAACTGACCAGTAACCCGCTGGTGCGCAAACTGTCGTTTACCGGTTCGACCGAAATTGGCCGCCAGTTAATGGAACAGTGCGCGAAAGACATCAAGAAAGTGTCGCTGGAGCTGGGCGGTAACGCGCCGTTTATCGTCTTTGACGATGCCGACCTCGACAAAGCCGTGGAAGGCGCGCTGGCCTCGAAATTCCGCAACGCCGGGCAAACCTGCGTCTgcg                                                 >  2:71114/1‑288 (MQ=255)                                                                                                                                                                                                                              gCGTTCCGGCTGGGGTATTTAACGTGGTCACCGGTTCGGCGGGCGCGGTCGGTAACGAACTGACCAGTAACCCGCTGGTGCGCAAACTGTCGTTTACCGGTTCGACCGAAATTGGCCGCCAGTTAATGGAACAGTGCGCGAAAGACATCAAGAAAGTGTCGCTGGAGCTGGGCGGTAACGCGCCGTTTATCGTCTTTGACGATGCCGACCTCGACAAAGCCGTGGAAGGCGCGCTGGCCTCGAAATTCCGCAACGCCGGGCAAACCTGCGTCTGCGCCAACCGCCTGt                                     <  1:71114/288‑1 (MQ=255)                                                                                                                                                                                                                                          gggTATTTAACGTGGTAACCGGTTCGGCGGGGGCGGTCGGTAACGAACTGACCAGTAACCCGCTGGTGCGCAAACTGTCGTTTACCGGTTCGACCGAAATTGGCCGCCAGTTAATGGAACAGTGCGCGAAAGACATCAAGAAAGTGTCGCTGGAGCTGGGCGGTAACGCGCCGTTTATCGTCTTTGACGATGCCGACCTCGACAAAGCCGTGGAAGGCGCGCTGGCCTCGAAATTCCGCAACGCCGGGCAAACCTGCGTCTGCGCCAACCGCCTGTATGTGCAGGACg                         <  2:253066/288‑1 (MQ=255)                                                                                                                                                                                                                                                                ttCGGCGGGCGCGGTCGGTAACGAACTGACCAGTAACCCGCTGGTGCGCAAACTGTCGTTTACCGGTTCGACCGAAATTGGCCGCCAGTTAATGGAACAGTGCGCGAAAGACATCAAGAAAGTGTCGATGGAGCTGGGCGGTAACGCGCCGTTTATCGTCTTTGACGATGCCGACCTCGACAAAGCCGTGGAAGGCGCGCTGGCCTCGAAATTCCGCAACGGCGGGCAAACCTGCGTCTGCGCCAACCGCCTGTATGTGCAGGAGGGCGTGGATGAccagtctgtcgaa  >  1:222409/1‑278 (MQ=255)                                                                                                                                                                                                                                                                               |                                                                                                                                                                                                                                                                                  TTATGGCGACACCATTCCTGGTCATCAGGCCGATAAACGCCTGATTGTTATCAAGCAGCCGATTGGCGTCACCGCGGCTATCACGCCGTGGAACTTCCCGGCGGCGATGATTACCCGCAAAGCCGGTCCGGCGCTGGCAGCAGGCTGCACCATGGTGCTGAAGCCCGCCAGTCAGACGCCGTTCTCTGCGCTGGCGCTGGCGGAGCTGGCGATCCGCGCGGGCGTTCCGGCTGGGGTATTTAACGTGGTCACCGGTTCGGCGGGCGCGGTCGGTAACGAACTGACCAGTAACCCGCTGGTGCGCAAACTGTCGTTTACCGGTTCGACCGAAATTGGCCGCCAGTTAATGGAACAGTGCGCGAAAGACATCAAGAAAGTGTCGCTGGAGCTGGGCGGTAACGCGCCGTTTATCGTCTTTGACGATGCCGACCTCGACAAAGCCGTGGAAGGCGCGCTGGCCTCGAAATTCCGCAACGCCGGGCAAACCTGCGTCTGCGCCAACCGCCTGTATGTGCAGGACGGCGTGTATGACCGTTTTGCCGAA  >  NC_000913/2791650‑2792193

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.