New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	4602975 =	26 (0.770)	4 (0.120)	4/484	NT	14.5%	intergenic (‑117/‑502)	yjjP/yjjQ	DUF1212 family inner membrane protein/putative transcriptional regulator
	?	NC_000913	4603100 =	22 (0.670)					intergenic (‑242/‑377)	yjjP/yjjQ	DUF1212 family inner membrane protein/putative transcriptional regulator

TCGAAGAGATAGAACTTTCGACGCTGTCCATTCCCAGTGCCCGACCCAGTCGTGAGGAAAGCTCATCAACCAACGCGCTTTCCGCACCATGTTGCAAAAGAAATAATCCACACTGGATACAAAGCCGTGTTACGGCTCGCTGTTGCTCAGTTTGCATAACTCGCCCTTTGTCATAGACGTGCTGCGTATTGTTCAGATAATGAGAATCCATTTGTATCATGAAGCACGGTTGTTTTGCGGTAGGTTAAGATCAAAATTGCGCTGATTAATCCTGGTTATCGGGAGAAGCTCGGTGATAAAAAGCGAATTATCTCTCGCCGCAAACAAACTATCACATGAATATTATCATCATAATGAATTTATTGTTTGGCCTTTACGAATCAGGATAATAGATAACCGGGCACGTTTTTTAATGTTAACAAGCTAAAACCATCAGATTTCATTGAATAAATATTGGTTGTGTGATTTTGCATTCTGCGGGAAGGGATATCATTTAATTATAAATTAAATGAATGTGATTTCTGTTTTTCATTAAGTATTCCTAACAACTTAATGTAGA  >  NC_000913/4602702‑4603260                                                                                                                                                                                                                                                                                  |                                                                                                                                                                                                                                                                                              tCGAAGAGATAGAACTTTCGACGCTGTCCATTCCCAGTGCCCGACCCAGTCGTGAGGAAAGCTCATCAACCAACGCGCTTTCCGCACCATGTTGCAAAAGAAATAATCCACACTGGATACAAAGCCGTGTTACGGCTCGCTGTTGCTCAGTTTGCATAACTCGCCCTTTGTCATAGACGTGCTGCGTATTGTTCAGATAATGAGAATCCATTTGTATCATGAAGCACGGTTGTTTTGCGGTAGGTTAAGATCAAAATTGCGCTGATTAATCCTGGTTATCGGGAGAAg                                                                                                                                                                                                                                                                                 <  1:53747/288‑1 (MQ=255)     agagATAGAACTTTCGACGCTGTCCATTCCCAGTGCCCGACCCAGTCGTGAGGAAAGCTCATCAACCAACGCGCTTTCCGCACCATGTTGCAAAAGAAATAATCCACACTGGATACAAAGCCGTGTTACGGCTCGCTGTTACTCAGTTTGCATAACTCGCCCTTTGTCATAGACGTGCTGCGTATTGTTCAAATAATGAGAATCCATTTGTATCATGAAGCACGGTTGTTTTGCGGTAGGTTAAGATCAAAATTGCGCTGATTAATCCTGGTTATCGGGAGAAGCTCg                                                                                                                                                                                                                                                                             <  1:112817/288‑1 (MQ=255)                                     gTGCCCGACCCAGTCGTGAGGAAAGCTCATCAACCAACGCGCTTTCCGCACCATGTTGCAAAAGAAATAATCCACACTGGATACAAAGCCGTGTTACGGCTCGCTGTTGCTCAGTTTGCATAACTCGCCCTTTGTCATAGACGTGCTGCGTATTGTTCAGATAATGAGAATCCATTTGTATCATGAAGCACGGTTGTTTTGCGGTAGGTTAAGATCAAAATTGCGCTGATTAATCCTGGTTATCGGTAGAAGCTCGGTGATAAAAAGCGAATTATCCCTCGCCGcaaac                                                                                                                                                                                                                                            >  2:312078/1‑289 (MQ=255)                                                                                            agcctggagacatttaaaatatctacattaagttgttaggaatacttaatgaaaaacagaaatcacattcatttaatttataattaaatgatatcccttcccgcagaatgcaaaatcacacaaccaatatttattcaatgaaatctgatggttttagcttgttaacattaaaaaacgtgcccGGTTATCGGGAGAAGCTCGGTGATAAAAAGCGAATTATCTCTCGCCGCAAACAAACTATCACATGAATATTATCATCATaa                                                                                                                                                                                                               >  1:190525‑M1/183‑263 (MQ=255)                                                                                            agcctggagacatttaaaatatctacattaagttgttaggaatacttaatgaaaaacagaaatcacattcatttaatttataattaaatgatatcccttcccgcagaatgcaaaatcacacaaccaatatttattcaatgaaatctgatggttttagcttgttaacattaaaaaacgtgcccGGTTATCGGGAGAAGCTCGGTGATAAAAAGCGAATTATCTCTCGCCGCAAACAAACTATCACATGAATATTATCATCATaa                                                                                                                                                                                                               <  2:190525‑M1/81‑1 (MQ=255)                                                                                             tGCAAAAGAAATAATCCACACTGGATACAAAGCCGTGTTACGGCTCGCTGTTGCTCAGTTTGCATAACTCGCCCTTTGTCATAGACGTGCTGCGTATTGTTCAGATAATGAGAATCCATTTGTATCATGAAGCACGGTTGTTTTGCGGTAGGTTAAGATCAAAATTGCGCTGATTAATCCTGGTTATCGGGAGAAGCTCGGTGATAAAAAGCGAATTATCTCTCGCCGCAAACAAACTATCACATGAATATTATCATCATAATGAATTTATTGTTTGGCCTTTACGaa                                                                                                                                                                                     >  2:18114/1‑288 (MQ=255)                                                                                                               cacTGGATACAAAGCCGTGTTACGGCTCGCTGTTGCTCAGTTTGCATAACTCGCCCTTTGTCATAGACGTGCTGCGTATTGTTCAGATAATGAGAATCCATTTGTATCATGAAGCACGGTTGTTTTGCGGTAGGTTAAGATCAAAATTGCGCTGATTAATCCTGGTTATCGGGAGAAGCTCGGTGATAAAAAGCGAATTATCTCTCGCCGCAAACAAACTATCACATGAATATTATCATCATaa                                                                                                                                                                                                               <  2:249158/244‑1 (MQ=255)                                                                                                               cacTGGATACAAAGCCGTGTTACGGCTCGCTGTTGCTCAGTTTGCATAACTCGCCCTTTGTCATAGACGTGCTGCGTATTGTTCAGATAATGAGAATCCATTTGTATCATGAAGCACGGTTGTTTTGCGGTAGGTTAAGATCAAAATTGCGCTGATTAATCCTGGTTATCGGGAGAAGCTCGGTGATAAAAAGCGAATTATCTCTCGCCGCAAACAAACTATCACATGAATATTATCATCATaa                                                                                                                                                                                                               >  1:249158/1‑244 (MQ=255)                                                                                                                                    aCGGCTCGCTGTTGCTCAGGTTGCATAACTCGCCCTTTGTCATAGACGTGCTGCGTATTGTTCAGATAATGAGAATCCATTTGTATCATGAAGCACGGTTGTTTTGCGGTAGGTTAAGATCAAAATTGCGCTGATTAATCCTGGTTATCGGGAGAAGCTCGGTGATAAAAAGCGAATTATCTCTCGCCGCAAACAAACTATCACATGAATATTATCATCATAATGAATTTATTGTTTGGCCTTTACGAATCAGGATAATAGATAACCGGGCACGTTTTTTAATGTTAAc                                                                                                                                             <  2:245327/289‑1 (MQ=255)                                                                                                                                      tacttaatgaaaaacagaaatcacattcatttaatttataattaaatgatatcccttcccgcagaatgcaaaatcacacaaccaatatttattcaatgaaatctgatggttttagcttgttaacattaaaaaacgtgcccGGTTATCGGGAGAAGCTCGGTGATAAAAAGCGAATTATCTCTCGCCGcaaa                                                                                                                                                                                                                                             >  2:277924‑M1/141‑191 (MQ=255)                                                                                                                                      tacttaatgaaaaacagaaatcacattcatttaatttataattaaatgatatcccttcccgcagaatgcaaaatcacacaaccaatatttattcaatgaaatctgatggttttagcttgttaacattaaaaaacgtgcccGGTTATCGGGAGAAGCTCGGTGATAAAAAGCGAATTATCTCTCGCCGcaaa                                                                                                                                                                                                                                             <  1:277924‑M1/51‑1 (MQ=255)                                                                                                                                                               aCTCGCCCTTTGTCATAGACGTGCTGCGTATTGTTCAGATAATGAGAATCCATTTGTATCATGAAGCACGGTTGTTTTGCGGTAGGTTAAGATCAAAATTGCGCTGATTAATCCTGGTTATCGGGAGAAGCTCGGTGATAAAAAGCGAATTATCTCTCGCCGCAAACAAACTATCACATGAATATTATCATCATAATGAATTTATTGTTTGGCCTTTACGAATCAGGATAATAGATAACCGGGCACGTTTTTTAATGTTAACAAGCTAAAACCATCAGATTTCATTGaa                                                                                                                  <  1:18114/289‑1 (MQ=255)                                                                                                                                                                               aGACGTGCTGCGTATTGTTCAGATAATGAGAATCCATTTGTATCATGAAGCACGGTTGTTTTGCGGTAGGTTAAGATCAAAATTGCGCTGATTAATCCTGGTTATCGGGAGAAGCTCGGTGATAAAAAGCGAATTATCTCTCGCCGCAAACAAACTATCACATGAATATTATCATCATAATGAATTTATTGTTTGGCCTTTACGAATCAGGATAATAGATAACCGGGCACGTTTTTTAATGTTAACAAGCTAAAACCATCAGATTTCATTGAATAAATATTGGTtgtgt                                                                                                  >  1:269819/1‑289 (MQ=255)                                                                                                                                                                                     gctgcGTATTGTTCAGATAATGAGAATCCATTTGTATCATGAAGCACGGTTGTTTTGCGGTAGGTTAAGATCAAAATTGCGCTGATTAATCCTGGTTATCGGGAGAAGCTCGGTGATAAAAAGCGAATTATCTCTCGCCGCAAACAAACTATCACATGAATATTATCATCATAATGAATTTATTGTTTGGCCTTTACGAATCAGGATAATAGATAACCGGGCACGTTTTTTAATGTTATCAAGCTAAAACCATCAGATTTCATTGaa                                                                                                                  <  2:7630/267‑1 (MQ=255)                                                                                                                                                                                     gctgcGTATTGTTCAGATAATGAGAATCCATTTGTATCATGAAGCACGGTTGTTTTGCGGTAGGTTAAGATCAAAATTGCGCTGATTAATCCTGGTTATCGGGAGAAGCTCGGTGATAAAAAGCGAATTATCTCTCGCCGCAAACAAACTATCACATGAATATTATCATCATAATGAATTTATTGTTTGGCCTTTACGAATCAGGATAATAGATAACCGGGCACGTTTTTTAATGTTATCAAGCTAAAACCATCAGATTTCATTGaa                                                                                                                  >  1:7630/1‑267 (MQ=255)                                                                                                                                                                                     gctgcGTATTGTTCAGATAATGAGAATCCATTTGTATCATGAAGCACGGTTGTTTTGCGGTAGGTTAAGATCAAAATTGCGCTGATTAATCCTGGTTATCGGGAGAAGCTCGGTGATAAAAAGCGAATTATCTCTCGCCGCAAACAAACTATCACATGAATATTATCATCATAATGAATTTATTGTTTGGCCTTTACGAATCAGGATAATAGATAACCGGGCACGTTTTTTAATGTTAACAAGCTAAAACCATCAGATTTCATTGaataaata                                                                                                            >  2:283208/1‑273 (MQ=255)                                                                                                                                                                                     gctgcGTATTGTTCAGATAATGAGAATCCATTTGTATCATGAAGCACGGTTGTTTTGCGGTAGGTTAAGATCAAAATTGCGCTGATTAATCCTGGTTATCGGGAGAAGCTCGGTGATAAAAAGCGAATTATCTCTCGCCGCAAACAAACTATCACATGAATATTATCATCATAATGAATTTATTGTTTGGCCTTTACGAATCAGGATAATAGATAACCGGGCACGTTTTTTAATGTTAACAAGCTAAAACCATCAGATTTCATTGaataaata                                                                                                            <  1:283208/273‑1 (MQ=255)                                                                                                                                                                                      ctgcGTATTGTTCAGATAATGAGAATCCATTTGTATCATGAAGCACGGTTGTTTTGCGGTAGGTTAAGATCAAAATTGCGCTGATTAATCCTGGTTATCGGGAGAAGCTCGGTGATAAAAAGCGAATTATCTCTCGCCGCAAACAAACTATCACATGAATATTATCATCATaa                                                                                                                                                                                                               >  1:26278/1‑173 (MQ=255)                                                                                                                                                                                      ctgcGTATTGTTCAGATAATGAGAATCCATTTGTATCATGAAGCACGGTTGTTTTGCGGTAGGTTAAGATCAAAATTGCGCTGATTAATCCTGGTTATCGGGAGAAGCTCGGTGATAAAAAGCGAATTATCTCTCGCCGCAAACAAACTATCACATGAATATTATCATCATaa                                                                                                                                                                                                               <  2:26278/173‑1 (MQ=255)                                                                                                                                                                                           tATTGTTCAGATAATGAGAATCCATTTGTATCATGAAGCACGGTTGTTTTGCGGTAGGTTAAGATCAAAATTGCGCTGATTAATCCTGGTTATCGGGAGAAGCTCGGTGATAAAAAGCGAATTATCTCTCGCCGCAAACAAACTATCACATGAATATTATCATCATAATGAATTTATTGTTTGGCCTTTACGAATCAGGATAATAGATAACCGGGCACGTTTTTTAATGTTAACAAGCTAAAACCATCAGATTTCATTGAATAAATATTGGTTGTGTGATTTTGCAt                                                                                        >  1:226016/1‑287 (MQ=255)                                                                                                                                                                                                 tCAGATAATGAGAATCCATTTGTATCATGAAGCACGGTTGTTTTGCGGTAGGTTAAGATCAAAATTGCGCTGATTAATCCTGGTTATCGGGAGAAGCTCGGTGATAAAAAGCGAATTATCTCTCGCCGCAAACAAACTATCACATGAATATTATCATCATAATGAATTTATTGTTTGGCCTTTACGAATCAGGATAATAGATAACCGGGCACGTTTTTTAATGTTAACAAGCTAAAACCATCAGATTTCATTGAATAAATATTGGTTGTGTGATTTTGCATTCTGCggg                                                                                <  2:269819/289‑1 (MQ=255)                                                                                                                                                                                                     aTAATGAGAATCCATTTGTATCATGAAGCACGGTTGTTTTGCGGTAGGTTAAGATCAAAATTGCGCTGATTAATCCTGGTTATCGGGAGAAGCTCGGTGATAAAAAGCGAATTATCTCTCGCCGCAAACAAACTATCACATGAATATTATCATCATAATGAATTTATTGTTTGGCCTTTACGAATCAGGATAATAGATAACCGGGCACGTTTTTTAATGTTAACAAGCTAAAACCATCAGATTTCATTTAATAAATATTGGTTGTGGGATTTTGCATTCTGCGGGAAgg                                                                            >  2:235115/1‑289 (MQ=255)                                                                                                                                                                                                     aTAATGAGAATCCATTTGTATCATGAAGCACGGTTGTTTTGCGGTAGGTTAAGATCAAAATTGCGCTGATTAATCCTGGTTATCGGGAGAAGCTCGGTGATAAAAAGCGAATTATCTCTCGCCGCAAACAAACTATCACATGAATATTATCATCATAATGAATTTATTGTTTGGCCTTTACGAATCAGGATAATAGATAACCGGGCACGTTTTTTAATGTTAACAAGCTAAAACCATCAGATTTCATTGAATAAATATTGGTTGTGTGATTTTGCATTCTGCGGGAAgg                                                                            >  2:296055/1‑289 (MQ=255)                                                                                                                                                                                                                   tttGTATCATGAAGCACGGTTGTTTTGCGGTAGGTTAAGATCAAAATTGCGCTGATTAATCCTGGTTATCGGGAGAAGCTCGGTGATAAAAAGCGAATTATCTCTCGCCGCAAACAAACTATCACATGAATATTATCATCATAATGAATTTATTGTTTGGCCTTTACGAATCAGGATAATAGATAACCGGGCACGTTTTTTAATGTTAACAAGCTAAAACCATCAGATTTCATTGAATAAATATTGGTTGTGTGATTTTGCATTCTGCGGGAAGGGATATCATTTAAtt                                                              >  1:160757/1‑289 (MQ=255)                                                                                                                                                                                                                                     gttgttTTGCGGTAGGTTAAGATCAAAATTGCGCTGATTAATCCTGGTTATCGGGAGAAGCTCGGTGATAAAAAGCGAATTATCTCTCGCCGCAAACAAACTATCACATGAATATTATCATCATAATGAATTTATTGTTTGGCCTTTACGAATCAGGATAATAGATAACCGGGCACGTTTTTTAATGTTAACAAGCTAAAACCATCAGATTTCATTGAATAAATATTGGTTGTGTGATTTTGCATTCTGCGGGACGGGATATCATTTAATTATAAATTAAATGAAtgtg                                            >  1:96795/1‑289 (MQ=255)                                                                                                                                                                                                                                      ttgttTTGCGGTAGGTTAAGATCAAAATTGCGCTGATTAATCCTGGTTATCGGGAGAAGCTCGGTGATAAAAAGCGAATTATCTCTCGCCGCAAACAAACTATCACATGAATATTATCATCATAATGAATTTATTGTTTGGCCTTTACGAATCAGGATAATAGATAACCGGGCACGTTTTTTAATGTTAACAAGCTAAAACCATCAGATTTCATTGAATAAATATTGGTTGTGTGATTTTGCATTCTGCGGGAAGGGATATCATTTAATTATAAATTAAATGAATGTGa                                           >  2:71061/1‑289 (MQ=255)                                                                                                                                                                                                                                              cGGTAGGTTAAGATCAAAATTGCGCTGATTAATCCTGGTTATCGGGAGAAGCTCGGTGATAAAAAGCGAATTATCTCTCGCCGCAAACAAACTATCACATGAATATTATCATCATAATGAATTTATTGTTTGGCCTTTACGAATCAGGATAATAGATAACCGGGCACGTTTTTTAATGTTAACAAGCTAAAACCATCAGATTTCAt                                                                                                                      >  2:138315/1‑206 (MQ=255)                                                                                                                                                                                                                                              cGGTAGGTTAAGATCAAAATTGCGCTGATTAATCCTGGTTATCGGGAGAAGCTCGGTGATAAAAAGCGAATTATCTCTCGCCGCAAACAAACTATCACATGAATATTATCATCATAATGAATTTATTGTTTGGCCTTTACGAATCAGGATAATAGATAACCGGGCACGTTTTTTAATGTTAACAAGCTAAAACCATCAGATTTCAt                                                                                                                      <  1:138315/206‑1 (MQ=255)                                                                                                                                                                                                                                                                     gcTGATTAATCCTGGTTATCGGGAGAAGCTCGGTGATAAAAAGCGAATTATCTCTCGCCGCAAACAAACTATCACATGAATATTATCATCATAATGAATTTATTGTTTGTCCTTTACGAATCAGGATAATAGATAACCGGGCACGTTTTTTAATGTTAACAAGCTAAAACCATCATATTTCATTGAATAAATATTGGTTGTGTGATTTTGCATTCTGCGGGAAGGGATATCATTTAATTATAAATTAAATGAATGTGATTTCTGTTTTTCATTAAGTATTCCTaacaac            <  1:235115/289‑1 (MQ=255)                                                                                                                                                                                                                                                                           tAATCCTGGTTATCGGGAGAAGCTCGGTGATAAAAAGCGAATTATCTCTCGCCGCAAACAAACTATCACATGAATATTATCATCATAATGAATTTATTGTTTGGCCTTTACGAATCAGGATAATAGATAACCGGGCACGTTTTTTAATGTTAACAAGCTAAAACCATCAGATTTCATTGAATAAATATTGGTTGTGTGATTTTGCATTCTGCGGGAAGGGATATCATTTAATTATAAATTAAATGAATGTGATTTCTGTTTTTCATTAAGTATTCCTAACAACTTAATg      <  2:54484/289‑1 (MQ=255)                                                                                                                                                                                                                                                                               ccTGGTTATCGGTAGAAGCTCGGTGATAAAAAGCGAATTATCTCTCGCCGCAAACAAACTATCACATGAATATTATCATCATAATGAATTTATTGTTTGGCCTTTACGAATCAGGATAATAGATAACCGGGCACGTTTTTTAATGTTAACAAGCTAAAACCATCAGATTTCATTGAATAAATATTGGTTGTGTGATTTTGCATTCTGCGGGAAGGGATATCATTTAATTATAAATTAAATGAATGTGATTTCTGTTTTTCATTAAGTATTCCTAACAACTTAATGTAGa  <  1:296055/289‑1 (MQ=255)                                                                                                                                                                                                                                                                                  |                                                                                                                                                                                                                                                                                              TCGAAGAGATAGAACTTTCGACGCTGTCCATTCCCAGTGCCCGACCCAGTCGTGAGGAAAGCTCATCAACCAACGCGCTTTCCGCACCATGTTGCAAAAGAAATAATCCACACTGGATACAAAGCCGTGTTACGGCTCGCTGTTGCTCAGTTTGCATAACTCGCCCTTTGTCATAGACGTGCTGCGTATTGTTCAGATAATGAGAATCCATTTGTATCATGAAGCACGGTTGTTTTGCGGTAGGTTAAGATCAAAATTGCGCTGATTAATCCTGGTTATCGGGAGAAGCTCGGTGATAAAAAGCGAATTATCTCTCGCCGCAAACAAACTATCACATGAATATTATCATCATAATGAATTTATTGTTTGGCCTTTACGAATCAGGATAATAGATAACCGGGCACGTTTTTTAATGTTAACAAGCTAAAACCATCAGATTTCATTGAATAAATATTGGTTGTGTGATTTTGCATTCTGCGGGAAGGGATATCATTTAATTATAAATTAAATGAATGTGATTTCTGTTTTTCATTAAGTATTCCTAACAACTTAATGTAGA  >  NC_000913/4602702‑4603260

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.