mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,060 | 0 | C | T | 29.0% | 132.9 / 67.8 | 94 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 380,013 | 0 | G | . | 27.3% | 48.6 / 17.0 | 25 | intergenic (‑132/+56) | frmR/yaiO | regulator protein that represses frmRAB operon/outer membrane protein |
| Marginal new junction evidence (lowest skew 10 of 43 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 274419 | NA (NA) | 5 (0.060) | 5/276 | 4.9 | NA | noncoding (731/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 274423 | NA (NA) | noncoding (727/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | = 3332821 | 117 (1.330) | 4 (0.050) | 4/260 | 5.1 | 3.6% | intergenic (‑86/+41) | yhbE/rpmA | EamA family inner membrane putative transporter/50S ribosomal subunit protein L27 |
| ? | NC_000913 | = 3332823 | 109 (1.370) | intergenic (‑88/+39) | yhbE/rpmA | EamA family inner membrane putative transporter/50S ribosomal subunit protein L27 | |||||
| * | ? | NC_000913 | = 2856434 | NA (NA) | 4 (0.050) | 4/266 | 5.2 | NA | noncoding (9/24 nt) | REP198 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP198 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | = 2856440 | NA (NA) | noncoding (15/24 nt) | REP198 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP198 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | NC_000913 | 643502 = | 83 (0.950) | 4 (0.050) | 4/268 | 5.2 | 4.7% | intergenic (+176/+55) | ybdR/rnk | putative Zn‑dependent NAD(P)‑binding oxidoreductase/regulator of nucleoside diphosphate kinase |
| ? | NC_000913 | 643524 = | 83 (1.010) | intergenic (+198/+33) | ybdR/rnk | putative Zn‑dependent NAD(P)‑binding oxidoreductase/regulator of nucleoside diphosphate kinase | |||||
| * | ? | NC_000913 | = 3760171 | 220 (2.510) | 6 (0.070) | 4/274 | 5.3 | 2.7% | coding (1079/1392 nt) | selA | selenocysteine synthase |
| ? | NC_000913 | = 3760184 | 221 (2.630) | coding (1066/1392 nt) | selA | selenocysteine synthase | |||||
| * | ? | NC_000913 | 3687206 = | 232 (2.640) | 4 (0.050) | 4/280 | 5.3 | 1.7% | coding (1968/3474 nt) | bcsC | cellulose synthase subunit |
| ? | NC_000913 | 3687231 = | 235 (2.740) | coding (1943/3474 nt) | bcsC | cellulose synthase subunit | |||||
| * | ? | NC_000913 | = 3622151 | NA (NA) | 4 (0.050) | 4/276 | 5.3 | 34.1% | coding (2960/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| ? | NC_000913 | = 3622177 | 8 (0.090) | coding (2986/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor | |||||
| * | ? | NC_000913 | 3607553 = | 129 (1.470) | 4 (0.050) | 4/276 | 5.3 | 3.0% | coding (1103/2199 nt) | zntA | zinc, cobalt and lead efflux system |
| ? | NC_000913 | 3607584 = | 131 (1.550) | coding (1134/2199 nt) | zntA | zinc, cobalt and lead efflux system | |||||
| * | ? | NC_000913 | = 3406774 | 98 (1.120) | 4 (0.050) | 4/276 | 5.3 | 4.1% | coding (858/1350 nt) | accC | acetyl‑CoA carboxylase, biotin carboxylase subunit |
| ? | NC_000913 | = 3406777 | 94 (1.110) | coding (861/1350 nt) | accC | acetyl‑CoA carboxylase, biotin carboxylase subunit | |||||
| * | ? | NC_000913 | = 2769865 | 81 (0.920) | 4 (0.050) | 4/276 | 5.3 | 4.8% | coding (163/702 nt) | yfjR | CP4‑57 prophage; putative DNA‑binding transcriptional regulator |
| ? | NC_000913 | = 2769886 | 80 (0.940) | coding (184/702 nt) | yfjR | CP4‑57 prophage; putative DNA‑binding transcriptional regulator | |||||