| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2947467 | 27 (0.310) | 4 (0.070) +TTGAACACCCTAACGGGTGTTTTTTTGTTTCTGGTCTCCC |
3/184 | NT | 10.2% | intergenic (+4/‑30) | metZ/metW | tRNA‑Met/tRNA‑Met |
| ? | NC_000913 | = 2947757 | 74 (0.850) | coding (1254/1254 nt) | amiC | N‑acetylmuramoyl‑L‑alanine amidase | |||||
ATCCGTGATCGGGGTAAAAAAAAGGTTGCATGAAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATGAAGTAAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATCAA > NC_000913/2947321‑2947578 | aTCCGTGATCGGGGTAAGAAAAAGGTTGCATGAAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCGAATCCGGCCCCCGCAACCAATTaa > 7:60898/1‑148 (MQ=255) tCCGTGATCGGGGTAAAAAAAAGGTTGCATGAAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATCaaat < 3:316811/149‑2 (MQ=255) gATGGGGGTAAAAATAAGGTGGCAGGAATTCGCGAGCGGAGTATTGTGCGCCTCCTCGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAA‑TCAAATTtgat < 1:211201/149‑1 (MQ=17) aTCGGGGTAAAAAAAAGGTTGCATGAAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTtga < 1:158746/148‑1 (MQ=255) tCGGGGTAAAAAAAAGGTTGCATGAAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTtgatg < 2:334402/149‑1 (MQ=255) ggggTAAAAAAAAGGTTGCATGAAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATGaa < 7:264639/149‑1 (MQ=255) aaaaaaGGTTGCATGAAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATGAAGTAAAGc < 8:358142/149‑1 (MQ=255) aaaaaaGGTTGCATGAAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATCaaa > 7:274855/1‑132 (MQ=255) aaaaaGGTTGCATGAAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATGAAGTAAAGCa < 7:215620/149‑1 (MQ=255) aaaaGGTTGCATGAAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATGAAGTAAAGCAg < 8:197977/149‑1 (MQ=255) aaaGGTTGCATGAAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATGAAGt > 6:18794/1‑141 (MQ=255) aaaGGTTGCATGAAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATGAAGt < 5:18794/141‑1 (MQ=255) ggTTGCATGAAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCTGTTCAATTCCGGCCCCCGCAACCAATTAAAATTTGATGAAGTAAAGCAGTACg < 1:55833/149‑1 (MQ=255) gTTGCATGAAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGTGCTCATAACCCGAAGGTCGTCGGTTCAAATCGGGCCCGCGCATCCAATTAAAATTTGATGAAGTAAAGCAGTACgg < 5:349870/149‑1 (MQ=255) tGAAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTtga < 2:153293/125‑1 (MQ=255) tGAAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTtga > 1:153293/1‑125 (MQ=255) gAAAACGCGATCGGAGTATTGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAA‑TCAAATTtga < 2:177583/123‑1 (MQ=17) ataCGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTTGAGCAGTCTGGTAGCTCGTCGGGCTCATAAGCCGAAGGTCGTCGGTTCAATTCCGGCCCCCGCAAGCAATTAAAATTTGATGTAGTTAAGCAGTACGGTGACGCggg < 2:149055/147‑1 (MQ=18) aaaCTCTAGCGGAGTATAGTGCGCAGCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCGATTAAAATTTGATGAAGTAAAGCAGTACGGTGACGCggg < 7:280695/149‑1 (MQ=255) tcgcgAGCGGAGTATAGTTCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCATTTAAAATTTGATGAAGTAAAGCAGTACGGTGACGCGGGGt < 3:77425/148‑1 (MQ=255) gTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATCAAAA‑TTGATGAAGTaaa > 2:314398/1‑112 (MQ=255) tGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAttgaacaccctaacgggtgtttttttgtttctggtctcccataaaaaag < 7:13110‑M1/144‑50 (MQ=255) tGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAttgaacaccctaacgggtgtttttttgtttctggtctcccataaaaaag > 8:13110‑M1/1‑95 (MQ=255) gAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAttgaacaccctaacg > 4:165068‑M1/1‑72 (MQ=255) gAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAttgaacaccctaacg < 3:165068‑M1/87‑16 (MQ=255) tgctagcTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAttgaacaccctaacgggtgtttttttgtttctg < 4:90566‑M1/94‑34 (MQ=255) gtcgGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAttgaacaccctaacgggtgtttttttgtttctggtctcccataaaaaggcgctgaatggcgcttttttatgg > 2:291577‑M1/1‑55 (MQ=255) gtcgGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAttgaacaccctaacgggtgtttttttgtttctggtctcccataaaaaggcgctgaatggcgcttttttatgg < 1:291577‑M1/127‑73 (MQ=255) aTAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATGAAGTAAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAAcc < 4:338273/116‑1 (MQ=255) aTAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATGAAGTAAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAAcc > 3:338273/1‑116 (MQ=255) gAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATGAAGTAAAGc > 6:211674/1‑58 (MQ=255) gAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATGAAGTAAAGc < 5:211674/58‑1 (MQ=255) tcgGTTCAAATCCGGCCCCCGCAACCAATTAttgaacaccctaacgggtgtttttttgt > 1:314359‑M1/1‑31 (MQ=255) tcgGTTCAAATCCGGCCCCCGCAACCAATTAttgaacaccctaacgggtgtttttttgt < 2:314359‑M1/59‑29 (MQ=255) cgGTTCAAATCCGGCCCCCGCAACCAATTAttgaacaccctaacgggtgtttttttgtttctggtctc < 7:19956‑M1/68‑39 (MQ=255) cgGTTCAAATCCGGCCCCCGCAACCAATTAttgaacaccctaacgggtgtttttttgtttctggtctc > 8:19956‑M1/1‑30 (MQ=255) gTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATGAAGTAAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGAAGCtcgtc > 3:227539/1‑86 (MQ=255) cccccGCAACCAATTAAAATTTTATTAAGTAAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAAccc < 6:93468/87‑1 (MQ=255) ccccGCAACCAATTAAAATTTGATGATGTTAAGCAGTAGGGTGAGGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCATATCCg < 6:87432/108‑1 (MQ=14) cAATTAAAATTTGATGAAGTAAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAAcc > 2:224493/1‑76 (MQ=255) cAATTAAAATTTGATGAAGTAAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAAcc < 1:224493/76‑1 (MQ=255) gttAAAATTTGTTGAAGTAAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAAttat < 6:55354/114‑4 (MQ=255) | ATCCGTGATCGGGGTAAAAAAAAGGTTGCATGAAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATGAAGTAAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATCAA > NC_000913/2947321‑2947578 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |