New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2525897 =	53 (0.610)	4 (0.050)	4/244	NT	8.1%	intergenic (+6/+33)	yfeN/yfeR	putative outer membrane protein/transcriptional regulator of yefH
	?	NC_000913	2525920 =	42 (0.520)					intergenic (+29/+10)	yfeN/yfeR	putative outer membrane protein/transcriptional regulator of yefH

GGCTGAATGGCGCAGTTGCACTGTGGTGGAATGCAACATCACACATTACTACGGGGATTCAGTATCGATATGCGGATGACAAACTGGGCGAAGATTTTTACCAGGATGCGATAATCTACTCCATCAAATTTAACTTCTGATTGATTACTGCCGGGGCTCCCGGCAGTATGAATTCACTCTATATCTGATACAACGGATCCCCTTCCCGCCCAGCCATTAGCGCATTGCCCTGGTCTCGTACCACGTCCCATAAAGCTTCAGCGGCGGTGGAAAGTGAACGGTTCTTCCTGC  >  NC_000913/2525752‑2526042                                                                                                                                                  |                                                                                                                                                  ggCTGTATGGCGCAGTTGCACTGTTGTTGAATGCAACATCACAAATTACTACGGGGATTCAGTATGGATATGCGGATGACTAACTGGGGGAAGTTTTTTACCAGGATGGGATAATCTTCTCCATCAAATTTATCTTCTGATTGATTACt                                                                                                                                                <  3:167481/149‑1 (MQ=255)  aacgccagttgatgctggtgcgcaggaagcaccgttcactttccaccgccgctgaagctttatgggacgtggtacgagaccagggcaatgcgctaatggctgggcgggaaggggatccgttgtatcagatatagagtgaattcaTACTg                                                                                                                                               <  3:264553‑M1/5‑1 (MQ=255)   cTGAATGGCGCAGTTGCACTGTGGTGGAATGCAACATCACACATTACTACGGGGATTCAGTATCGATATGCGGATGACAAACTGGGCGAAGATTTTTACCAGGATGCGATAATCTACTCCATCAAATTTAACTTCTGATTGATTACTGc                                                                                                                                              <  2:367558/149‑1 (MQ=255)     gAATGGCGCAGTTGCACTGTGGTGGAATGCAACATCACACATTACTACGGGGATTCAGTATCGATATGCGGATGACAAACTGGGCGAAGATTTTTACCAGGATGCGATAATCTACTCCATCAAATTTAACTTCTGATTGATTACTGCCg                                                                                                                                            >  7:229030/1‑149 (MQ=255)     gAATGGCGCAGTTGCACTGTGGTGGAATGCAACATCACACATTACTACGGGGATTCAGTATCGATATGCGGATGACAAACTGGGCGAAGATTTTTACCAGGATGCGATAATCTACTCCATCAAATTTAACTTCTGATTGATTACTGCCg                                                                                                                                            >  3:210313/1‑149 (MQ=255)      aaTGGCGCAGTTGCACTGTGGTGGAATGCAACATCACACATTACTACGGGGATTCAGTATCGATATGCGGATGACAAACTGGGCGAAGATTTTTACCAGGATGCGATAATCTACTCCATCAAATTTAACTTCTGATTGATTACTGCCgg                                                                                                                                           >  6:338057/1‑149 (MQ=255)      aaTGGCGCAGTTGCACTGTGGTGGAATGCAACATCACACATTACTACGGGGATTCAGTATCGATATGCGGATGACAAACTGGGCGAAGATTTTTACCAGGATGCGATAATCTACTCCATCAAATTTAACTTCTGATTGATTACTGCCg                                                                                                                                            <  5:219824/148‑1 (MQ=255)      aaTGGCGCAGTTGCACTGTGGTGGAATGCAACATCACACATTACTACGGGGATTCAGTATCGATATGCGGATGACAAACTGGGCGAAGATTTTTACCAGGATGCGATAATCTACTCCATCAAATTTAACTTCTGATTGATTACTGCCg                                                                                                                                            <  3:179818/148‑1 (MQ=255)       cagttgatgctggtgcgcaggaagacccgttcactttccaccgccgctgaagctttatgggacgtggtaagagaccagggcaattcgcgaatggctgggcgggcaggggatccggggtatcagagatagagtgaaatcaTACTGACggg                                                                                                                                          <  4:233935‑M1/10‑1 (MQ=255)       cagttgatgctggtgcgcaggaagaaccgttcactttccaccgccgctgaagctttatgggacgtggtacgagaccagggcaatgcgctaatggctgggcgggaaggggatccgttgtatcagatatagagtgaattcaTACTGCCgg                                                                                                                                           <  4:106459‑M1/9‑1 (MQ=255)       cagttgatgctggtgcgcaggaagaaccgttcactttccaccgccgctgaagctttatgggacgtggtacgagaccagggcaatgcgctaatggctgggcgggaaggggatccgttgtatcagatatagagtgaattcaTACTGCCgg                                                                                                                                           <  2:43035‑M1/9‑1 (MQ=255)         ggCGCAGTTGCACTGTGGTGGAATGCAACATCACACATTACTACGGGGATTCAGTATCGATATGCGGATGACAAACTGGGCGAAGATTTTTACCAGGATGCGATAATCTACTCCATCAAATTTAACTTCTGATTGATTACTGCCGGGGc                                                                                                                                        >  1:263453/1‑149 (MQ=255)                    aCTGTGGTGGAATGCAACATCACACATTACTACGGGGATTCAGTATCGATATGCGGATGACAAACTGGGCGAAGATTTTTACCAGGATGCGATAATCTACTCCATCAAATTTAACTTCTGATTGATTACTGCCGGGGCTCCCGGCAGTa                                                                                                                             <  2:263453/149‑1 (MQ=255)                     cTGTGGTGGAATGCAACATCACACATTACTACGGGGATTCAGTATCGATATGCGGATGACAAACTGGGCGAAGATTTTTACCAGGATGCGATAATCTACTCCATCAAATTTAACTTCTGATTGATTACTGCCGGGGCTCCCGGCAGTAt                                                                                                                            <  5:338057/149‑1 (MQ=255)                          gtggAATGCAACATCACACATTACTACGGGGATTCAGTATCGATATGCGGATGACAAACTGGGCGAAGATTTTTACCAGGATGCGATAATCTACTCCATCAAATTTAACTTCTGATTGATTACTGCCGGGGCTCCCGGCAGTATGAAt                                                                                                                        <  8:229030/148‑1 (MQ=255)                             gAATGCAACATCACACATTACTACGGGGATTCAGTATCGATATGCGGATGACAAACTGGGCGAAGATTTTTACCAGGATGCGATAATCTACTCCATCAAATTTAACTTCTGATTGATTACTGCCGGGGCTCCCGGCAGTATGAATTCa                                                                                                                     <  4:210313/148‑1 (MQ=255)                             gAATGCAACATCACACATTACTACGGGGATTCAGTATCGATATGCGGATCACAAACTGGGCGAAGATTTTTACCAGGATGCGATAATCTACTCCATCAAATTTAACTTCTGATTGATTACTGCCGGGGCTCCCGGCAGTATGAATTCAc                                                                                                                    <  2:377234/149‑1 (MQ=255)                              aaTGCAACATCACACATTACTACGGGGATTCAGTATCGATATGCGGATGACAAACTGGGCGAAGATTTTTACCAGGATGCGATAATCTACTCCATCAAATTTAACTTCTGATTGATTACTGCCGGGGCTCCCGGCAGTATGAATTCAct                                                                                                                   <  4:49140/149‑1 (MQ=255)                               aTGCAACATCACACATTACTACGGGGATTCAGTATCGATATGCGGATGACAAACTGGGCGAAGATTTTTACCAGGATTCGATAATCTACTCCATCAAATTTAACTTCTGATTGATTACTGCCGGGGCTCCCGGCAGTATGAATTCActc                                                                                                                  <  4:31577/149‑1 (MQ=255)                                   aaCATCACACATTACTACGGGGATTCAGTATCGATATGCGGATGACAAACTGGGCGAAGATTTTTACCAGGATGCGATAATCTACTCCATCAAATTTAACTTCTGATTGATTACTGCCGGGGCTCCCGGCAGTATGAATTCACTCtata                                                                                                              >  3:106459/1‑149 (MQ=255)                                    aCATCACACATTACTACGGGGATTCAGTATCGCTATGCGGATGACAAACTGGGCGAAGATTTTTACCAGGATGCGATAATCTACTCCATCAAATTTAACTTCTGATTGATTACTGCCGGGGCTCACGGCCGTATGACTTCACTCTatat                                                                                                             >  3:233935/1‑149 (MQ=255)                                    aCATCACACATTACTACGGGGATTCAGTATCGATATGCGGATGACAAACTGGGCGAAGATTTTTACCAGGATGCGATAATCTACTCCATCAAATTTAACTTCTGATTGATTACTGCCGGGGCTCCCGGCAGTATGAATTCACTCTatat                                                                                                             <  5:270697/149‑1 (MQ=255)                                         tttccaccgccgctgaagctttatgggacgtggtacgagaccagggcaatgcgctaatggctgggcgggaaggggatccgttgtatcagatatagagtgaattcaTACTGCCGGGGCTCCCGGCAGTa                                                                                                                             <  8:55523‑M1/23‑1 (MQ=255)                                         tttccaccgccgctgaagctttatgggacgtggtacgagaccagggcaatgcgctaatggctgggcgggaaggggatccgttgtatcagatatagagtgaattcaTACTGCCGGGGCTCCCGGCAGTa                                                                                                                             >  7:55523‑M1/106‑128 (MQ=255)                                         acacaTTACTACGGGGATTCAGTATCGATATGCGGATGACAAACTGGGCGAAGATTTTTACCAGGATGCGATAATCTACTCCATCAAATTTAACTTCTGATTGATTACTGCCGGGGCTCCCGGCAGTATGAATTCACTCTATATCTGa                                                                                                         <  3:189029/148‑1 (MQ=255)                                         acacaTTACTACGGGGATTCAGTATCGATATGCGGATGACAAACTGGGCGAAGATTTTTACCAGGATGCGATAATCTACTCCATCAAATTTAACTTCTGATTGATTACTGCCGGGGCTCCCGGCAGTATGAATTCACTCTATATCTGa                                                                                                         <  7:304682/148‑1 (MQ=255)                                             aTTACTACGGGGAATCAGTATCGATATGCGGATGACAAACTGGGCGAAGATTTTTACCAGGATGCGATAATCTACTCCATCAAATTTAACTTCTGATTGATTACTGCCGGGGCTCCCGGCAGTATGAATTCACTCTATATCTGATACaa                                                                                                    <  6:362493/149‑1 (MQ=255)                                              ttACTACGGGGATTCAGTATCGATATGCGGATGACAAACTGGGCGAAGATTTTTACCAGGATGCGATAATCTACTCCATCAAATTTAACTTCTGATTGATTACTGCCGGGGCTCCCGGCAGTATGAATTCACTCTATATCTGATACAAc                                                                                                   <  2:198297/149‑1 (MQ=255)                                                    cGGGGATTCAGTATCGATATGCGGATGACAAACTGGGCGAAGATTTTTACCAGGATGCGATAATCTACTCCATCAAATTTAACTTCTGATTGATTACTGCCGGGGCTCCCGGCAGTATGAATTCACTCTATATCTGATACAACGGATcc                                                                                             >  4:94746/1‑149 (MQ=255)                                                    cGGGGATTCAGTATCGATATGCGGATGACAAACTGGGCGAAGATATTTACCAGGATGCGATAATCTACTCCATCAAATTTAACTTCTGATTGATTACTGCCGGGGCTCCCGGCAGTATGAATTCACTCTATATCTGATACAACGGATcc                                                                                             >  8:254567/1‑149 (MQ=255)                                                     ggggATTCAGTATCGATATGCGGATGACAAACTGGGCGAAGATTTTTACCAGGATGCGATAATCTACTCCATCAAATTTAACTTCTGATTGATTACTGCCGGGGCTcc                                                                                                                                     <  2:27140/108‑1 (MQ=255)                                                     ggggATTCAGTATCGATATGCGGATGACAAACTGGGCGAAGATTTTTACCAGGATGCGATAATCTACTCCATCAAATTTAACTTCTGATTGATTACTGCCGGGGCTcc                                                                                                                                     >  1:27140/1‑108 (MQ=255)                                                     ggggATTCAGTATCGATATGCGGATGACAAACTGGGCGAAGATTTTTACCAGGATGCGATAATCTACTCCATCAAATTTAACTTCTGATTGATTACTGCCGGGGCTCCCGGCAGTATGAATTCACTCTATATCTGATACAACGGATccc                                                                                            >  8:385492/1‑149 (MQ=255)                                                        gATTCAGTATCGATATGCGGATGACAAACTGGGCGAAGATTTTTACCAGGATGCGATAATCTACTCCATCAAATTTAACTTCTGATTGATTACTGCCGGGGCTCCCGGCAGTATGAATTCACTCTATATCTGATACAACGGATCCCCtt                                                                                         >  4:60649/1‑149 (MQ=255)                                                         aTTCAGTATCGATATGCGGATGACAAACTGGGCGAAGATTTTTACCAGGATGCGATAATCTACTCCATCAAATTTAACTTCTGATTGATTACTGCCGGGGCTCCCGGCAGTATGAATTCACTCTATATCTGATACAACGGATCCCCTTc                                                                                        <  7:385492/149‑1 (MQ=255)                                                                 tCGATATGCGGATGACAAACTGGGCGAAGATTTTTACCAGGATGCGATAATCTACTCCATCAAATTTAACTTCTGATTGATTACTGCCGGGGCTCCCGGCAGTATGAATTCACTCTATATCTGATACAACGGATCCCCTTCCCGCCCAg                                                                                >  4:264553/1‑149 (MQ=255)                                                                    atatGCGGATGACAAACTGGGCGAAGATTTTTACCAGGATGCGATAATCTACTCCATCAAATTTAACTTCTGATTGATTACTGCCGGGGCTCCCGGCAGTATGAATTCAct                                                                                                                   <  7:58600/111‑1 (MQ=255)                                                                    atatGCGGATGACAAACTGGGCGAAGATTTTTACCAGGATGCGATAATCTACTCCATCAAATTTAACTTCTGATTGATTACTGCCGGGGCTCCCGGCAGTATGAATTCAct                                                                                                                   >  8:58600/1‑111 (MQ=255)                                                                                 aaaCTGGGCGAAGATTTTTACCAGGATGCGATAATCTACTCCATCAAATTTAACTTCTGATTGATTACTGCCGGGGCTCCCGGCAGTATGAATTCACTCTATATCTGATACAACGGATCCCCTTCCCGCCCAGCCATTAGCGCATTGcc                                                                >  5:205403/1‑149 (MQ=255)                                                                                  aaCTGGGCGAAGATTTTTACCAGGATGCGATAATCTACTCCATCAAATTTAACTTCTGATTGATTACTGCCGGGGCTCCCGGCAGTATGAATTCACTCTATATCTGATACAACGGATCCCCTTCCCGCCCAGCCATTAGCGCATTGccc                                                               >  3:92305/1‑149 (MQ=255)                                                                                   aCTGGGCGAAGATTTTTACCAGGATGCGATAATCTACTCCATCAAATTTAACTTCTGATTGATTACTGCCGGGGCTCCCGGCAGTATGAATTCACTCTATATCTGATACAACGGATCCCCTTCCCGCCCAGCCATTAGCGCATTGCCCt                                                              <  7:197988/149‑1 (MQ=255)                                                                                   aCTGGGCGAAGATTTTTACCAGGATGCGATAATCTACTCCATCAAATTTAACTTCTGATTGATTACTGCCGGGGCTCCCGGCAGTATGAATTCACTCTATATCTGATACAACGGATCCCCTTCCCGCCCAGCCATTAGCGCATTGCCCt                                                              >  3:246374/1‑149 (MQ=255)                                                                                        gCGAAGATTTTTACCAGGATGCGATAATCTACTCCATCAAATTTAACTTCTGATTGATTACTGCCGGGGCTCCCGGCAGTATGAATTCACTCTATATCTGATACAACGGATCCCCTTCCCGCCCAGCCATTAGCGCATTGCCCTGGtct                                                         >  2:226234/1‑149 (MQ=255)                                                                                                 tttACCAGGATGCGATAATCTACTCCATCAAATTTAACTTCTGATTGATTACTGCCGGGGCTCCCGGCAGTATGAATTCACTCTATATCTGATACAACGGATCCCCTTCCCGCCCAGCCATTAGCGCATTGCCCTGGTCTCGTACCAc                                                 <  4:246374/148‑1 (MQ=255)                                                                                                       aGGATGCGATAATCTACTCCATCAAATTTAACTTCTGATTGATTACTGCCGGGGCTCCCGGCAGTATGAATTCACTCTATATCTGATACAACGGATCCCCTTCCCGCCCAGCCATTAGCGCATTGCCCTGGTCTCGTACCACGTCCCa                                           >  7:206682/1‑148 (MQ=255)                                                                                                       aGGATGCGATAATCTACTCCATCAAATTTAACTTCTGATTGATTACTGCCGGGGCTCCCGGCAGTATGAATTCACTCTATATCTGATACAACGGATCCCCTTCCCGCCCAGCCATTAGCGCATTGCCCTGGTCTCGTACCACGTCCCAt                                          <  7:254567/149‑1 (MQ=255)                                                                                                             cGATAATCTACTCCATCAAATTTAACTTCTGATTGATTACTGCCGGGGCTCCCGGCAGTATGAATTCACTCTATATCTGATACAACGGATCCCCTTCCCGCCCAGCCATTAGCGCATTGCCCTGGTCTCGTACCACGTCCCATAAAGc                                     <  8:206682/148‑1 (MQ=255)                                                                                                                tAATCTACTCCATCAAATTTAACTTCTGATTGATTACTGCCGGGGCTCCCGGCAGTATGAATTCACTCTATATCTGATACAACGGATCCCCTTCCCGCCCAGCCATTAGCGCATTGCCCTGGTCTCGTACCACGTCCCATAAAGCTTCa                                 <  3:60649/149‑1 (MQ=255)                                                                                                                    atccgttgtatcagatatagagtgaattcaTACTGCCGGGGCTCCCGGCAGTATGAATTCACTCTATATCTGATACAACGGATCCCCTTCCCGCCCAGCCATTAGCGCATTGCCCTGGTCTCGTACCACGTCCCATaaa                                       >  5:106199‑M1/31‑139 (MQ=255)                                                                                                                    atccgttgtatcagatatagagtgaattcaTACTGCCGGGGCTCCCGGCAGTATGAATTCACTCTATATCTGATACAACGGATCCCCTTCCCGCCCAGCCATTAGCGCATTGCCCTGGTCTCGTACCACGTCCCATaaa                                       <  6:106199‑M1/109‑1 (MQ=255)                                                                                                                       cTCCATCAAATTTAACTTCTGATTGATTACTGCCGGGGCTCCCGGCAGTATGAATTCACTCTATATCTGATACAACGGATCCCCTTCCCGCCCAGCCATTAgcgc                                                                      >  8:122834/1‑105 (MQ=255)                                                                                                                       cTCCATCAAATTTAACTTCTGATTGATTACTGCCGGGGCTCCCGGCAGTATGAATTCACTCTATATCTGATACAACGGATCCCCTTCCCGCCCAGCCATTAgcgc                                                                      <  7:122834/105‑1 (MQ=255)                                                                                                                       cTCCATCAAATTTAAATTCTGATTGATTACTGCCGGGGCTCCCGGCAGTATGAATTCACTCTTTATCTGATACAACGGATCCCCTTCCCGCCCCGCCATTAGCGCATTGCCCTGGTCTCGTACCACGTCCCATAAAGCTTCAGcggcgg                          >  5:152532/1‑149 (MQ=255)                                                                                                                          cATCAAATTTAACTTCTGATTGATTACTGCCGGGGCTCCCGGCAGTATGAATTCACTCTATATCTGATACAACGGATCCCCTTCCCGCCCAGCCATTAGCGCATTGCCCTGGTCTCGTACCACGTCCCATAAAGCTTCAGCGGCGGTg                        >  2:58914/1‑148 (MQ=255)                                                                                                                          cATCAAATTTAACTTCTGATTGATTACTGCCGGGGCTCCCGGCAGTATGAATTCACTCTATATCTGATACAACGGATCCCCTTCCCGCCCAGCCATTAGCGCATTGCCCTGGTCTCGTACCACGTCCCATAAAGCTTCAGCGGCGGTg                        >  5:56407/1‑148 (MQ=255)                                                                                                                            tCAAATTTAACTTCTGATTGATTACTGCCGGGGCTCCCGGCAGTATGAATTCACTCTATATCTGATACAACGGATCCCCTTCCCGCCCAGCCATTAGCGCATTGCCCTGGTCTCGTACCACGTCCCATAAAGCTTCAGCGGCGGTGGa                      >  1:135623/1‑148 (MQ=255)                                                                                                                               aaTTTAACTTCTGATTGATTACTGCCGGGGCTCCCGGCAGTATGAATTCACTCTATATCTGATACAACGGATCCCCTTCCCGCCCAGCCAtt                                                                           >  3:106270/1‑92 (MQ=255)                                                                                                                               aaTTTAACTTCTGATTGATTACTGCCGGGGCTCCCGGCAGTATGAATTCACTCTATATCTGATACAACGGATCCCCTTCCCGCCCAGCCAtt                                                                           <  4:106270/92‑1 (MQ=255)                                                                                                                                 tttAACTTCTGATTGATTACTGCCGGGGCTCCCGGCAGTATGAATTCACTCTATATCTGATACAACGGATCCCCTTCCCGCCCAGCCATTAGCGCATTGCCCTGGTCTCGTACCACGTCCCATAAAGCTTCAGCGGCGGTGGAAAGTg                 >  1:43035/1‑148 (MQ=255)                                                                                                                                      cTTCTGATTGATTACTGCCGGGGCTCCCGGCAGTATGAATTCACTCTATATCTGATACAACGGATCCCCTTCCCGCCCAGCCATTAGCGCATTGCCCTGGTCTCGTACCACGTCCCATAAAGCTTCAGCGGCGGTGGAAAGTGAACGGt           >  2:106847/1‑149 (MQ=255)                                                                                                                                         cTGATTGATTACTGCCGGGGCTCCCGGCAGTATGAATTCACTCTATATCTGATACAACGGATCCCCTTCCCGCCCAGCCATTAGCGCATTGCCCTGGTCTCGTACCACGTCCCATAAAGCTTCAGCGGCGGTGGAAAGTGAACGGttc         <  3:94746/148‑1 (MQ=255)                                                                                                                                           gattgattACTGCCGGGGCTCCCGGCAGTATGAATTCACTCTATATCTGATACAACGGATCCCCTTCCCGCCCAGCCATTAGCGCATTGCCCTGGTCTCGTACCACGTCCCATAAAGCTTCAGCGGCGGTGGAAAGTGAACGGttcttc      >  8:67049/1‑149 (MQ=255)                                                                                                                                                attACTGCCGGGGCTCCCGGCAGTATGAATTCACTCTATATCTGATACAACGGATCCCCTTCCCGCCCAGCCATTAGCGCATTGCCCTGGTCTCGTACCACGTCCCATAAAGCTTCAGCGGCGGTGGAAAGTGAACGGTTCTTCCTgc  <  1:226234/148‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                                  GGCTGAATGGCGCAGTTGCACTGTGGTGGAATGCAACATCACACATTACTACGGGGATTCAGTATCGATATGCGGATGACAAACTGGGCGAAGATTTTTACCAGGATGCGATAATCTACTCCATCAAATTTAACTTCTGATTGATTACTGCCGGGGCTCCCGGCAGTATGAATTCACTCTATATCTGATACAACGGATCCCCTTCCCGCCCAGCCATTAGCGCATTGCCCTGGTCTCGTACCACGTCCCATAAAGCTTCAGCGGCGGTGGAAAGTGAACGGTTCTTCCTGC  >  NC_000913/2525752‑2526042

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.